Package: NestLink
Type: Package
Title: NestLink an R data package to guide through Engineered Peptide
        Barcodes for In-Depth Analyzes of Binding Protein Ensembles
Authors@R: c(person("Pascal", "Egloff",
    email = "p.egloff@imm.uzh.ch",
    role = c("aut"),
    comment = c(ORCID = "0000-0001-8948-3704")),
  person("Iwan", "Zimmermann",
    email = "izimmermann@imm.uzh.ch",
    role = c("ctb"),
    comment = c(ORCID = "0000-0003-3476-4749")),
  person("Fabian M.", "Arnold",
    role = c("ctb"),
    email = "mail@fabianarnold.com"),
  person("Cedric A.J.", "Hutter",
    email = "chutter@imm.uzh.ch",
    role = c("ctb"),
    comment = c(ORCID = "0000-0002-8920-3343")),
  person("Damien", "Morger",
    email = "damien.morger@rqmicro.com"),
  person("Lennart", "Opitz",
    email = "lopitz@fgcz.ethz.ch",
    role = c("aut", "cre"),
    comment = c(ORCID = "0000-0001-7945-6737")),
  person("Lucy", "Poveda",
    email = "lucy.poveda@fgcz.uzh.ch",
    role = "ctb",
    comment = c(ORCID = "0000-0002-5291-5582")),
  person("Hans-Anton", "Keserue",
    role = c("ctb"),
    email = "ha.keserue@rqmicro.com"),
  person("Christian", "Panse",
    email = "cp@fgcz.ethz.ch",
    role = c("aut", "ctb"),
    comment = c(ORCID = "0000-0003-1975-3064")),
  person("Bernd", "Roschitzki",
    email = "bernd.roschitzki@fgcz.uzh.ch",
    role = c("aut"),
    comment = c(ORCID = "0000-0001-5756-9773")),
  person("Markus", "Seeger",
    role = c("aut"),
    email = "m.seeger@imm.uzh.ch",
    comment = c(ORCID = "0000-0003-1761-8571")))
Version: 1.26.0
Depends: R (>= 3.6), AnnotationHub (>= 2.15), ExperimentHub (>= 1.0),
        Biostrings (>= 2.51), gplots (>= 3.0), protViz (>= 0.4),
        ShortRead (>= 1.41)
Imports: grDevices, graphics, stats, utils
Description: Provides next-generation sequencing (NGS) and mass spectrometry
  (MS) sample data, code snippets and replication material used for developing
  NestLink. The NestLink approach is a protein binder selection and
  identification technology able to biophysically characterize thousands of
  library members at once without handling individual clones at any stage of the
  process. Data were acquired on NGS and MS platforms at the
  Functional Genomics Center Zurich.
License: GPL
VignetteBuilder: knitr
Suggests: BiocStyle (>= 2.2), DT, ggplot2, knitr, rmarkdown, testthat,
        specL, lattice, scales
NeedsCompilation: no
biocViews: ExperimentHub, ExperimentData, SequencingData,
        MassSpectrometryData, ReproducibleResearch
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/NestLink
git_branch: RELEASE_3_22
git_last_commit: 81bfb69
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-11-04
Packaged: 2025-11-04 16:37:40 UTC; biocbuild
Author: Pascal Egloff [aut] (ORCID: <https://orcid.org/0000-0001-8948-3704>),
  Iwan Zimmermann [ctb] (ORCID: <https://orcid.org/0000-0003-3476-4749>),
  Fabian M. Arnold [ctb],
  Cedric A.J. Hutter [ctb] (ORCID:
    <https://orcid.org/0000-0002-8920-3343>),
  Lennart Opitz [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7945-6737>),
  Lucy Poveda [ctb] (ORCID: <https://orcid.org/0000-0002-5291-5582>),
  Hans-Anton Keserue [ctb],
  Christian Panse [aut, ctb] (ORCID:
    <https://orcid.org/0000-0003-1975-3064>),
  Bernd Roschitzki [aut] (ORCID: <https://orcid.org/0000-0001-5756-9773>),
  Markus Seeger [aut] (ORCID: <https://orcid.org/0000-0003-1761-8571>)
Maintainer: Lennart Opitz <lopitz@fgcz.ethz.ch>
