8a45141004f9d4a26358b0e2ff153e09 *DESCRIPTION
ec5210552f76b75fe420d009afa2289b *LICENSE
2affe44517a481b3af5589e5991cf13e *NAMESPACE
304827c13670c6cfe98187aec6186bb9 *NEWS.md
e3f3d67c083749b01b9c7b157775da22 *R/AllGenerics.R
81627336865feb816985ff381aa0959f *R/DataClasses.R
d23d1b67865280a58eaf57da704035d1 *R/Deprecated.R
506cae9b7ced99fd1e9626b605aa42b9 *R/MPI.R
f567c4efc4de020953c304efda4611f3 *R/MsExperiment-functions.R
66109f2edfef56e11c2f9361cc075661 *R/MsExperiment.R
145b89c14f51b7895ea00b0e0e5006f3 *R/XcmsExperiment-functions.R
2a747cd122d42ab9bd9eeaf3f87741f9 *R/XcmsExperiment-plotting.R
cbf0ced1f071b7dbda14d7557eb30827 *R/XcmsExperiment.R
9eef2c60962b8ae2b148187508544939 *R/XcmsExperimentHdf5-functions.R
60fb01d79547c04efd05c7d97b9b28bd *R/XcmsExperimentHdf5.R
04a024459ea8ffbbd32042708b08780d *R/c.R
d9ccc2b2466f519f52ca72562b8d075e *R/cwTools.R
da0d517c576aab84aaf514af03323cda *R/databases.R
4aa31f1650e84649105f30edea69c7c8 *R/do_adjustRtime-functions.R
c016f70847fc3173452c3a4e29a89138 *R/do_findChromPeaks-functions.R
966d96cc77e4315faebf5988e4061deb *R/do_groupChromPeaks-functions.R
9304625f4d3f1551f8b214aa1506e517 *R/fastMatch.R
82b165a6c195288016daaec54f65e817 *R/functions-Chromatogram.R
bfdd9eff8b455e17fc78438c78bf7a3e *R/functions-IO.R
34758c661f6af31aedea16f354f9e989 *R/functions-MsFeatureData.R
d622952a664db535710f6c0e507de538 *R/functions-OnDiskMSnExp.R
6f03e0496437de0cdbf19acbdba9d9dc *R/functions-Params.R
47f9fa64967438b11cbdc97e9ab8b872 *R/functions-ProcessHistory.R
5c34bf42cfc93f43a9064f7dff6d3f3e *R/functions-XCMSnExp.R
5a8e5a151a4419eadcd1855e4383e51d *R/functions-XChromatogram.R
8f13d33f0c156c2140be66950ca59dc2 *R/functions-XChromatograms.R
d83644310fa2ee38d70429c7471b5cb0 *R/functions-binning.R
28f34852d72fb50dcae2bbf1fc1c34ff *R/functions-imputation.R
b08be109f969e2d0a37df7eac362b0dc *R/functions-utils.R
3f54c5de4b20ff4c4d26c7892f93d454 *R/functions-xcmsEIC.R
14d45072e9f8ec76e48f8b5bca48c94a *R/functions-xcmsFragments.R
4d2c821cda80fe790e16e52f022988f6 *R/functions-xcmsRaw.R
fcdfe9775b5d655436e78207fddad032 *R/functions-xcmsSet.R
a6bd54c95ff731ec0490440c51adcc72 *R/functions-xcmsSwath.R
beb3d6a5363c8c51d7b74ea9472535cf *R/hidden_aliases.R
2fa077d7a58d4662fed8cce3153bfbcc *R/init.R
9d3f29ae0a514069401bf77ef5634efb *R/loadXcmsData.R
007f3e718f0593150779dd8af534aa1c *R/matchpeaks.R
027165df50baeee40c69be1e2ea99961 *R/method-filterFeatures.R
cba20e3eeed6b8ba5618c9f48114bf23 *R/methods-Chromatogram.R
e324112bd4775aca0c7394da0f03cc13 *R/methods-IO.R
1a93a67af02aa786ab74ee9c7ae2f947 *R/methods-MChromatograms.R
505907a15ce64695787ed7d769b33048 *R/methods-MsFeatureData.R
2e5e3d2d9ff1901b5aeb14da477c397e *R/methods-OnDiskMSnExp.R
94ee398917b8b5d1ec210d75d6f0348c *R/methods-Params.R
b3b6330e3ae12d7e680fea36f8a45b17 *R/methods-ProcessHistory.R
082b27943283057566845232d25bf4f8 *R/methods-XCMSnExp.R
5c87c2512701d41dbf0dbe0f04975bfd *R/methods-XChromatogram.R
99abbfb3db727f018540c307d72e9556 *R/methods-XChromatograms.R
6629ba26595d975c359394fa2d242acb *R/methods-group-features.R
ff22797fe58d7833c02aed6d2c35f40e *R/methods-xcmsEIC.R
9a5c5e2303f7bd9dd88976057dcec5f4 *R/methods-xcmsFileSource.R
6def80720de76afede9e404cb41045c2 *R/methods-xcmsFragments.R
18f7bb563505892f1a9df1e3be0add39 *R/methods-xcmsPeaks.R
432f82b9fb78115ac4201e425f78dc57 *R/methods-xcmsRaw.R
2294c8be52f5027ecef81f16ddfd6c4b *R/methods-xcmsSet.R
67dfed1cdf366c71bf61243a64120020 *R/models.R
0d9a9ab1d195f43098be62ccffdc0eaa *R/mzClust.R
de0625d7322f2ce8fd7bda3592763b29 *R/plotQC.R
65699b0eb28535d228aabe442fca5ecb *R/specDist.R
603033fabf9f478b167fd5f243d6cd88 *R/write.mzquantML.R
a822419b51eb091156f75051214b58f7 *R/writemzdata.R
667eb00e34729fb8f7bd27431d20492a *R/writemztab.R
4b62310073a00de4be1e6367c99b9572 *R/xcmsSource.R
6c017c784e71ac6daea3d5957d5209a6 *R/zzz.R
c356babd0c65345a93e571eceee6a611 *_pkgdown.yml
0baa493863d8bb7d0586882c80cb3e2a *build/vignette.rds
47515db22d71cf08ebbe56e13f45043a *data/faahko_sub.RData
dbe6f33ff04e8651cb83992ea94c79b5 *data/faahko_sub2.RData
e3db548ddc1ad2a6037630921a880050 *data/xdata.RData
c728eac6f56e43ba9596b3e879758a39 *data/xmse.RData
bc3e3132713f08b08729464b5cd1beaf *inst/CHANGELOG
71dd48cd941ea0d3d79c9891603971a6 *inst/CITATION
10efcd1a4eb828c07b7cfe50dd398e23 *inst/doc/LC-MS-feature-grouping.R
4d02d9dc12c9fcd30fbd69ed7ed05d2b *inst/doc/LC-MS-feature-grouping.Rmd
bc718db749fc0e4940650490a5be7885 *inst/doc/LC-MS-feature-grouping.html
61f897f5cb3189ea4efb2266e1922b9b *inst/doc/xcms-direct-injection.R
d6273475042e8e981e5643e3b23e534c *inst/doc/xcms-direct-injection.Rmd
c6787342215933fd5e4bddc251890cdc *inst/doc/xcms-direct-injection.html
0bb4f455eef6e7520d2c449d1262d791 *inst/doc/xcms-lcms-ms.R
f3fe58bbaabc14a8c5315d8d538b587a *inst/doc/xcms-lcms-ms.Rmd
1ac16c4b1957924e156c5a28cec6616d *inst/doc/xcms-lcms-ms.html
ac76ddf5bc5d74cb1b4e86511bc51010 *inst/doc/xcms.R
3cd00be48e2dae8f4e40a5d7cbf44902 *inst/doc/xcms.Rmd
60d6a34ee69e1b5494bf770830abef80 *inst/doc/xcms.html
42b539324e0c0c0de004d9343ab1cdb4 *inst/mgf/metlin-2724.mgf
27658954e049e557f176376126b7dd09 *inst/mgf/metlin-68898.mgf
40087a05bf0736135fc600a201ae0b51 *inst/mgf/metlin-72445.mgf
fceaebbde58c551ef7b65e734af5e4f5 *inst/xsd/mzQuantML_1_0_0.xsd
7262b613c9e73e603e704d4a5b1dba08 *logo.png
b9735a9f8cb19445b2cb68d13049cd2b *longtests/testthat.R
6bf20ecc3f298565d5eeef2d17641b5a *longtests/testthat/test_do_adjustRtime-functions.R
1c7c8d70a4041c2a5c2fc574212eb9fb *longtests/testthat/test_do_findChromPeaks-functions.R
f8f3924bb7b6bcff533446b8a07f641c *longtests/testthat/test_do_groupChromPeaks-functions.R
177dfec5f54384e5e6f5a70e7acd0a6d *longtests/testthat/test_functions-OnDiskMSnExp.R
45cb381eb52a43e11eb135462b659dc5 *longtests/testthat/test_methods-OnDiskMSnExp.R
69653951a5681b0c6c761a753a8c4ed9 *longtests/testthat/test_methods-XCMSnExp.R
8311da207dbf7800dbdfa99e0d15a013 *longtests/testthat/test_old_BiocParallel.R
80d65205636f9e6b42496e691f064766 *longtests/testthat/test_old_absentPresent.R
1bc6f5e94afe45ec164f23c5c758a72d *longtests/testthat/test_old_functions-IO.R
21e49cb48419fb58bd04ab694dfff448 *longtests/testthat/test_old_functions-xcmsRaw.R
971889ef7a223bb7f75bcae306f42fd2 *longtests/testthat/test_old_functions-xcmsSet.R
1efb449cc3a8753b93e0565a5a0c6024 *longtests/testthat/test_old_methods-IO.R
6c80987ad81456981f6a7e8ef56c23a8 *longtests/testthat/test_old_methods-xcmsRaw.R
90d2d4e19b83e0f201fae7e7681aae71 *longtests/testthat/test_old_methods-xcmsSet.R
580612bab304485743a72ec4f1df12cb *longtests/testthat/test_old_xcmsSource.R
4311c734024a6fa55ca1db73ce616be4 *longtests/testthat/test_specDist.R
528ebfde40dcc843944651bcf6ac55cc *man/AutoLockMass-methods.Rd
64c40836dbe9cb4464eee28fc141e1be *man/BlankFlag.Rd
1b3261fbbbc89bc7975a5ce07598063a *man/DratioFilter.Rd
5a02eb1120cc69cc82074657af3a49fc *man/GenericParam.Rd
ce82e8ed5e790480a7977461f7e70e3f *man/LamaParama.Rd
e7c0e5fb6a4a2bec6e999f6786b24a30 *man/PercentMissingFilter.Rd
0a3f06cb106e71d3f0379c555a564f29 *man/ProcessHistory-class.Rd
254552012dc7f7e35dafe8bcb7a13191 *man/RsdFilter.Rd
11e282ee6db2d0d1b1dc59282507485a *man/SSgauss.Rd
18bcbf97f477109fc13fad498987ed08 *man/XCMSnExp-class.Rd
dabf396e30f7d963efc2e8f36f0e73a4 *man/XCMSnExp-filter-methods.Rd
a36b6b4a2db3789e789e9b8462686303 *man/XCMSnExp-inherited-methods.Rd
dccbeecca38c44bf896326bbce66bb24 *man/XCMSnExp-peak-grouping-results.Rd
404e5967c8a04738a24b8d53226fa4d5 *man/XChromatogram.Rd
57dfd4cf002c40a88e9cfe7188bee0dc *man/XcmsExperiment.Rd
9b08853e1ea20aa95be5f18841295a66 *man/XcmsExperimentHdf5.Rd
e8b5ad123373823620067bf51b106655 *man/absent-methods.Rd
3470121d511afb8d3f93604ee99ce0e0 *man/adjustRtime.Rd
a2f639f169e8ceb520d008e81ebcd17c *man/applyAdjustedRtime.Rd
abc09814ded9ca3df8a4d374fc9db019 *man/binYonX.Rd
bfa69f7a6b982314db44622b3e767d4a *man/breaks_on_binSize.Rd
fdad2fa9e5228db911949fe647a5d8c0 *man/breaks_on_nBins.Rd
ac2f3dcb7f1df4e61049cb0f8ca37b92 *man/c.xcmsSet.Rd
635cd9daf418fb840b03bb5094965d75 *man/calibrate-calibrant-mass.Rd
6dff7380eeeaa3f2276d52737c5f4de2 *man/calibrate.Rd
d91d11582907db47e88d9603d11232d7 *man/chromPeakChromatograms.Rd
02bde842de51272b72941bd6bcb1996a *man/chromPeakSpectra.Rd
a5402df0297ee45849ce577410968f69 *man/chromPeakSummary.Rd
5084672606b196f93e9b9710bc023894 *man/chromatogram-method.Rd
88c68aae39b3099403aa287d1ad54277 *man/colMax.Rd
dacd50cd5b24b9219be538272fdcac02 *man/collect-methods.Rd
a8adb16aa2a55997d99e988e11a8845a *man/correlate-Chromatogram.Rd
8fa306770581cfa1aeeba6a17255e405 *man/descendZero.Rd
4d95337f84610ce1ae0c7544380274bf *man/diffreport-methods.Rd
a2d316dcdb237507c62db2b1798d5668 *man/dirname.Rd
80e56c549fd157d727511078faf28b09 *man/do_adjustRtime_peakGroups.Rd
2adef4cc4e6ea56a526f0dc8050a9419 *man/do_findChromPeaks_centWave.Rd
5a98410ee23516384d2f8af84799a5ad *man/do_findChromPeaks_centWaveWithPredIsoROIs.Rd
0f26bf40297586e02f71383f0cdadf19 *man/do_findChromPeaks_massifquant.Rd
18de4baf03956da30f3dabf0fda893b0 *man/do_findChromPeaks_matchedFilter.Rd
d9e604068289a9377fc5e30e1a8ec77a *man/do_findPeaks_MSW.Rd
e069009c98b3a71ad9f4607406a1d21a *man/do_groupChromPeaks_density.Rd
ab3c412b5451e934de3979cb6fbc51a4 *man/do_groupChromPeaks_nearest.Rd
428026aa42a9469d03ada3b46d5513b2 *man/do_groupPeaks_mzClust.Rd
2f05fd02fdca1f0f2f5bfc0043ada113 *man/doubleMatrix.Rd
ac975b59bf1fa7312387a0261c2eb7eb *man/estimatePrecursorIntensity.Rd
3cfe095a28ffeb938d433b37209b1926 *man/etg.Rd
4f67504555d4760504b1048e9e86540f *man/exportMetaboAnalyst.Rd
57eb244f036d357689a104b6672f8f97 *man/extractMsData-method.Rd
a97333f44718aa64f74619f635371209 *man/feature-grouping.Rd
e58e6f1e85a8f4ca13c8428978eac40e *man/featureChromatograms.Rd
465de91a90b915d3b8377b67f99e6dc3 *man/featureSpectra.Rd
4eb8853b7e1767ab43f223741d1befb6 *man/featureSummary.Rd
7262b613c9e73e603e704d4a5b1dba08 *man/figures/logo.png
4bfcd4a9e112ae6306f1f02339f05043 *man/fillChromPeaks.Rd
972423a4d25f037afcb172dea2f6dd66 *man/fillPeaks-methods.Rd
f82c9051868564658be7c4e3a162f173 *man/fillPeaks.MSW-methods.Rd
1188706b6011dea880b134e3277c0add *man/fillPeaks.chrom-methods.Rd
0c8138e4b991bdc570277e5e3333c4e9 *man/filter-MChromatograms.Rd
008adefb48def63cf3178c948cfcf8ea *man/filterFeatures.Rd
6e04e8ad1d3278745642388f59631691 *man/filtfft.Rd
f33b038525c6fea5ee23ad1ff6a9f728 *man/findChromPeaks-Chromatogram-CentWaveParam.Rd
cd90f9f7bee6d92391bac3b491e517e7 *man/findChromPeaks-Chromatogram-MatchedFilter.Rd
c33368d108b0847ff70fbc2bcdd6d74e *man/findChromPeaks-centWave.Rd
a1360ca0363e09651e9363f9fef0d6d3 *man/findChromPeaks-centWaveWithPredIsoROIs.Rd
7888f75098e7df1205d77c9583d5f31c *man/findChromPeaks-massifquant.Rd
faf3840d09ef08e3582e86d61cda27c1 *man/findChromPeaks-matchedFilter.Rd
eb0600fdff37b51199682d8a1932e4bc *man/findChromPeaks.Rd
eccf4015626d486a6219333b39b43726 *man/findChromPeaksIsolationWindow.Rd
ed46329afc71ac1cf4eb21e89f128b97 *man/findEqualGreater.Rd
c930b7511b15d669d214d81b2e5f76ea *man/findMZ.Rd
a1691810ad509e5eb577f8c5af13ec9d *man/findPeaks-MSW.Rd
5e6258cf6e3634d700c04fac70d04cd5 *man/findPeaks-methods.Rd
fc93860c49ddd2e3ec0ad2b217fdd05f *man/findPeaks.MS1-methods.Rd
9af500ec98cccded0734ef902445fd24 *man/findPeaks.MSW-xcmsRaw-method.Rd
350e8cdcf0b82f417c835c13f6cbfcd6 *man/findPeaks.addPredictedIsotopeFeatures-methods.Rd
e075f715276cf1bff39f1f489aaa760e *man/findPeaks.centWave-methods.Rd
c201e405ee1950e506c70dafcba6b5a0 *man/findPeaks.centWaveWithPredictedIsotopeROIs-methods.Rd
ef5944e4f6f002c7ec061475b1d3ccb5 *man/findPeaks.massifquant-methods.Rd
c6e2db7c553e5fd691fee1b4709b188c *man/findPeaks.matchedFilter-xcmsRaw-method.Rd
162cd44207e4f43c64f64bf6ea014d2b *man/findneutral.Rd
b923006b7c9a6fcee55e16985d293ed2 *man/getEIC-methods.Rd
050370037d22250b132fad48113110f5 *man/getPeaks-methods.Rd
fbcdcbd20b9d4e311b67477e8d2031a8 *man/getScan-methods.Rd
7a28f5bb2e08478c79bc6b522e07b217 *man/getSpec-methods.Rd
38787794f7480e781ef16c69e2c59abf *man/getXcmsRaw-methods.Rd
6ec8d2c5b574dedce80eaba00849584e *man/group-methods.Rd
f8c78993821e037cefaa985f1d42bd37 *man/group.density.Rd
49783db361e87d62292a248e6cdaab62 *man/group.mzClust.Rd
6d2c454d228765297307f1a4e8b22afd *man/group.nearest.Rd
a4209fa5f5cded5bf202808555bb56ed *man/groupChromPeaks.Rd
e148f5d0a882b24485922bd0cd96fce2 *man/groupFeatures-abundance-correlation.Rd
3db5a84612103003826bdc8ab28cf8fb *man/groupFeatures-eic-similarity.Rd
161accac50b76a771b7fa14e5b9dfdeb *man/groupFeatures-similar-rtime.Rd
545e3622692ae4be4454611affbc0f05 *man/groupOverlaps.Rd
e5dadffb2d6110f2f3c993348c8bb259 *man/groupnames-XCMSnExp.Rd
74deda9449ebd9d9c9f7f86af5493732 *man/groupnames-methods.Rd
d47825f560505ec2237535816fe378e9 *man/groupval-methods.Rd
1ac784b0ae984e8b6661c048157bfe3a *man/hidden_aliases.Rd
409e68b11fcdd9b5a77f32269d85158b *man/highlightChromPeaks.Rd
f09d2f7876af0326978331afe368fa10 *man/image.xcmsRaw.Rd
a57b9d284b1435b43ca82247fe601299 *man/imputeLinInterpol.Rd
4c9b28b5db9c5ab9d0a335171728ad12 *man/imputeRowMin.Rd
7f39a27d063478c8fb3e8e3edb7d74fe *man/imputeRowMinRand.Rd
e052f4cc8dacefada40a462a89fa654c *man/isolationWindowTargetMz-OnDiskMSnExp-method.Rd
2e4f695c2c86ab568fdd4eba53be3479 *man/levelplot.xcmsRaw.Rd
b94287a173cf4a1167955dce437f5551 *man/loadRaw-methods.Rd
2f5dfb4d479c35a60339d76a6f7b6f2e *man/loadXcmsData.Rd
fc723ff1b0508b7785ed46133edbfcaa *man/manualChromPeaks.Rd
50ea556f7b08a16f7965730992b887ab *man/medianFilter.Rd
54f43f0269ce9a5fea0a9f055aa86033 *man/msn2xcmsRaw.Rd
d94762bbded391fa326305e9ffb439f7 *man/na.flatfill.Rd
4c37ee97b2c11301312bff8486162a14 *man/overlappingFeatures.Rd
ec822602d0ae1313b111ef711c7b8398 *man/panel.cor.Rd
7eca081ab89347399cd7527cceb7674b *man/peakPlots-methods.Rd
a1a7d5b9799c6f23623165dd60130fb9 *man/peakTable-methods.Rd
b9cbe89653ed0f9f322fadcac84ecb8e *man/peaksWithCentWave.Rd
2bf533f34af39016d52713d57c09c03e *man/peaksWithMatchedFilter.Rd
c0e33897bcb55afe78c1c0b9f7a09df9 *man/phenoDataFromPaths.Rd
df8ddac983fa03e3c38536844745ccf8 *man/plot.xcmsEIC.Rd
f68e3038059c291375894dac44a4e742 *man/plotAdjustedRtime.Rd
b5fef965b39d87d4046b1649d5a4683c *man/plotChrom-methods.Rd
4a4055e470a24a1f8395219fbd4fbafd *man/plotChromPeakDensity.Rd
92b91d34b91f9d2b3d1fc73690eb8e1b *man/plotChromPeaks.Rd
b22c3f8b9eba05bd84344d4d95e79e04 *man/plotChromatogramsOverlay.Rd
0b4647d6d99eb06239f71e1863fe7e42 *man/plotEIC-methods.Rd
20e8e36985428eb9504d09f82febbb81 *man/plotFeatureGroups.Rd
c3ae403705ecc17c385874a20252e13c *man/plotMsData.Rd
8454dba89bac0e0e3e20d00bb6d3069b *man/plotPeaks-methods.Rd
13fde3cc3c3f5ffee4b0e55beeb6d63b *man/plotPrecursorIons.Rd
3a162dc9b28eb399b701eeb1007ff965 *man/plotQC.Rd
115dd6f532b1b79dfdbc36830e4f7271 *man/plotRaw-methods.Rd
92f33c2ed8b2fe3e67d50286cc42471a *man/plotScan-methods.Rd
07adaa18f9dd802b071488c98ed58a48 *man/plotSpec-methods.Rd
1134f2f2f3e46e9c7f0427fba588ffd5 *man/plotSurf-methods.Rd
b331639286fa742ccc7c9c5a64cbbafd *man/plotTIC-methods.Rd
9fb1a8e203b680eb151db2bd4e4e6565 *man/plotrt-methods.Rd
4028151ee9674ab28c7b0b47e974e53c *man/profGenerate.Rd
d59e75692c22944d77b72dbabdf310d0 *man/profMat-xcmsSet.Rd
02e6c9ec34d0f9635c3897bb09e23eca *man/profMedFilt-methods.Rd
9fde721113bb26948db1e03d90284220 *man/profMethod-methods.Rd
bf6c9efd34521ac2152ac6269ef02f4d *man/profRange-methods.Rd
354a40334c44249706c67d5dba277393 *man/profStep-methods.Rd
3be04bc32308062c9fa68e3e56d8f615 *man/pval.Rd
56f1ebc9c3d98bdf407c8a46ca91d736 *man/rawEIC-methods.Rd
9ff3391bdd1ef9c3d04ee0fb4fa85113 *man/rawMat-methods.Rd
cee332dc77d1a09322b395ea16f289d4 *man/reconstructChromPeakSpectra.Rd
270ce348d16337ed9dd7a6e5880fd4a5 *man/rectUnique.Rd
e3ee7ed5d00d4cd06a0cc1a99a7b6a3e *man/refineChromPeaks.Rd
d7148b9d80db63b8315dd72512d45258 *man/removeIntensity-Chromatogram.Rd
bb4a4fbafc3593417bb0cb9e3650429a *man/retcor-methods.Rd
f2baad6c753cda6884f182b2414b4fda *man/retcor.obiwarp-methods.Rd
5dce3a398303879aa355a8f280efecaa *man/retcor.peakgroups-methods.Rd
9a864f3fd7a25392683968fe15b2988d *man/retexp.Rd
301cbcf0069ec3944338d224552f7248 *man/rla.Rd
91205404990af855ad5257a76c93d775 *man/sampnames-methods.Rd
fbaaa47a44b0fdc6fbd67894a9d7551d *man/showError-xcmsSet-method.Rd
9c755d71c92bcf73945ac1fed78d4d30 *man/specDist-methods.Rd
ee532e6dcf7afc644bb94a5cfc0a661e *man/specDist.cosine-methods.Rd
75fff89d2e2cae19f8b8dc406b0693ad *man/specDist.meanMZmatch-methods.Rd
87f8dbdce2ce30d12e8aa8a9f79eec5b *man/specDist.peakCount-methods.Rd
5ec477d5d29d0a2e1847106f693cf3d2 *man/specNoise.Rd
2e1fd25e6a69a1c2ae76a97f8a057998 *man/specPeaks.Rd
f925a9725a5b5b5b23255e3b566f474b *man/split.xcmsRaw.Rd
3ba01b1ad4b5a26164017cc78ec5b8eb *man/split.xcmsSet.Rd
a2b4b6bfd1a11bfc32803f461d715477 *man/stitch-methods.Rd
68dbd11ffe3056162b8805abb19e13a3 *man/sub-xcmsRaw-logicalOrNumeric-missing-missing-method.Rd
9b5d6eaa60e2851d427a8c083fc41a18 *man/updateObject-xcmsSet-method.Rd
99d5775e7b2509407c46a905790b0f95 *man/useOriginalCode.Rd
05621420feaf8edbd46ab40e46648d68 *man/verify.mzQuantML.Rd
c73d467947cbfb6f3785f6e02a7bb56e *man/write.cdf-methods.Rd
d8a082178d67ff6fe8d7f20e0b94a522 *man/write.mzQuantML.Rd
1424c37b44375f518d78059f73150ace *man/write.mzdata-methods.Rd
c641163a23a9a237943555c0c016e7b5 *man/writeMSData-XCMSnExp-character-method.Rd
a19c2d5f0e45f21bed5aca918f7a6fe5 *man/writeMzTab.Rd
43c2e0b9a3bcbf0c3d6e9c3b070488c0 *man/xcms-deprecated.Rd
b2f58af8f8a68ef3bd1537ae6d6bacf2 *man/xcmsEIC-class.Rd
fc0b4818e28e42e44b858923f8c1b1e1 *man/xcmsFileSource-class.Rd
91dbd128fd867fd27673271da8636582 *man/xcmsFragments-class.Rd
b2ca008da83fdba0ae9ca2fb02f3ec51 *man/xcmsFragments.Rd
edb6e0f8a05de5f39cab8dffc3cf07ef *man/xcmsPeaks-class.Rd
649f88cd381ccebe7c8e10c5b8c87a9d *man/xcmsRaw-class.Rd
9e8d36488b4a91781a177db0327f211a *man/xcmsRaw.Rd
7df538e7c00cd007752f01269c4965a2 *man/xcmsSet-class.Rd
4f463535e847c0ec165d90cb979b77df *man/xcmsSet.Rd
999424b014cd03b921c1318ce2059c07 *man/xcmsSource-class.Rd
6ecfc665971b78ffd1d5a4f97a6dbdfb *man/xcmsSource-methods.Rd
db575b01bc2ebfe9020bab88918058d4 *src/Makevars
98f8ed9260d6de9e806760b901399abe *src/Makevars.win
93a8bcc38512f1ee8212ea80192558b4 *src/binarySearch.h
47017b4cf72e8ec6d6fa8a6064f02725 *src/binners.c
f58e8f53425a84c3a1803d3822996588 *src/binners.h
025152ebfa0c595608de09d0cc2e7366 *src/fastMatch.c
6639f1b0b6124d5f1b2dc94ab8c07106 *src/massifquant/DataKeeper.cpp
486c5458f2075c6917cbe935c747c705 *src/massifquant/DataKeeper.h
ae8ac3a7f39d6d175bf806bf3977bbf9 *src/massifquant/OpOverload.cpp
9667f8695b645ef34aed87cd5bc2a8e5 *src/massifquant/OpOverload.h
8535d3afc29a8bba050bc307c89d877d *src/massifquant/SegProc.cpp
8d93bdee6b6b7e29096b63a16a688e71 *src/massifquant/SegProc.h
76a46d1e0b979e496a2e22dcbb0e60af *src/massifquant/TrMgr.cpp
a27ab98828afeffda469fa207a4cb9a9 *src/massifquant/TrMgr.h
965c6f88c876be425ccb5b88da875870 *src/massifquant/Tracker.cpp
040c83a0d1c898fbbcfe30699d3b1d56 *src/massifquant/Tracker.h
710d61d92d52b930cc593c2f37e0b2d9 *src/massifquant/dpq.h
e1a778971bcad8b03c7ad587f7fba8b2 *src/massifquant/nmath.h
02fc6b54c7ffa7590307764ab00a7be7 *src/massifquant/xcms_massifquant.cpp
b5540baa7a671469c1153d1c27f88608 *src/mzClust_hclust.c
9f8836d60cd52bff97f85e406691adfd *src/mzROI.c
802e77f2ecea756162719d19565e1a79 *src/obiwarp/lmat.h
ada4e9815eb687967a9be881b33d43b2 *src/obiwarp/mat.cpp
b584ff7663261173b8648de0b2237cee *src/obiwarp/mat.h
de035297505cafe54d7598a8f7c1cb18 *src/obiwarp/vec.cpp
53abf0ee025ffdad27db4b8cedf61451 *src/obiwarp/vec.h
da489b84bb125015c4ed920c7b1eef9c *src/obiwarp/xcms_dynprog.cpp
d1dd35310ae146c918bbdde397b7db0e *src/obiwarp/xcms_dynprog.h
65b0d2904799f8663062923ee23335da *src/obiwarp/xcms_lmat.cpp
fd5c9e20a8db519bb1b12e9572b3ea0b *src/util.c
76039cf93298985f941bd5f43e61357b *src/util.h
c4349d65ed47c39d29a72e7097e687b0 *src/xcms.c
37006fd9e972c62a78c104da5d66a719 *src/xcms.h
2ede7d112896bc9497a9f26ddfae5df7 *src/xcms_obiwarp.cpp
776e81af1dd5f42336cd732a9b7e6182 *tests/testthat.R
c9d26dce5e49c35a122338e57664df8b *tests/testthat/test_Chromatogram.R
d593a77bdb6a5045f731293ded163bc4 *tests/testthat/test_MsExperiment-functions.R
ed1baafd2707cf3d3f5f30b3a0f8d27d *tests/testthat/test_MsExperiment.R
c77381efe6a066dabd10fe5576564e09 *tests/testthat/test_MsFeatureData.R
529fa0cf5a5c517d2ca16e414fea46b5 *tests/testthat/test_Param_classes.R
a7b713070cdabf29f94e4101b93b4bbe *tests/testthat/test_XcmsExperiment-functions.R
c88d5aa4c21cec5a3ebd18dd3e55fbf7 *tests/testthat/test_XcmsExperiment-plotting.R
9234dfd7bbbacc6900c1ad676f0ad125 *tests/testthat/test_XcmsExperiment.R
50431d64532d2b40812e773ae950ae35 *tests/testthat/test_XcmsExperimentHdf5-functions.R
7b5b005a119a4f6c425efc454bb0a511 *tests/testthat/test_XcmsExperimentHdf5.R
e32272898bd2320c8332f79b64697b5b *tests/testthat/test_do_adjustRtime-functions.R
aa62dc4d39e1ab4a65c6e77b894bd875 *tests/testthat/test_do_findChromPeaks-functions.R
37f6619f3e361b4cc1f763bc49dcc674 *tests/testthat/test_do_groupChromPeaks-functions.R
f8d036161bef99b7daf5d0bd85d9389b *tests/testthat/test_function-filtering.R
97150d4561e0b2176afdc35b9ca9ebf6 *tests/testthat/test_functions-Chromatogram.R
b756fcfb02b21a4aa3ab7d5a97dfb4fd *tests/testthat/test_functions-OnDiskMSnExp.R
4f9513dd6afd1dc401fdaeaa81541638 *tests/testthat/test_functions-ProcessHistory.R
db3e8faca2fa30e0d6fbc5f381e5f296 *tests/testthat/test_functions-XCMSnExp.R
a7d30dab55862732ea86187e5e322157 *tests/testthat/test_functions-XChromatogram.R
dba6872985189a74a01f888bab3d558e *tests/testthat/test_functions-XChromatograms.R
74b99188a6b415a39eca912a040e75b9 *tests/testthat/test_functions-binning.R
d1b55ae5ed43677a611ad8dcf25f0852 *tests/testthat/test_functions-imputation.R
52a56d0379716c63134d831ee3e4e62d *tests/testthat/test_functions-utils.R
c1d61f90b995f66f363c61a610c1b332 *tests/testthat/test_functions-xcmsSwath.R
3e0f90d3b0faa7608dbc8f615815ab4e *tests/testthat/test_loadXcmsData.R
c406dac3ae5ee2a85a9363e84256398d *tests/testthat/test_matchpeaks.R
e091410d68d2c40431adb1e48e77f063 *tests/testthat/test_methods-Chromatogram.R
c7b50b7d4289cb35842ab8738058db83 *tests/testthat/test_methods-MChromatograms.R
939e9a3598839c0e56ba71a03fd78a21 *tests/testthat/test_methods-OnDiskMSnExp.R
c906d1525b49ce64c6ddc153550e6b35 *tests/testthat/test_methods-XCMSnExp.R
61137192324728b631d937b029c4d034 *tests/testthat/test_methods-XChromatogram.R
20eb4216016c583437ccb4d1da53c685 *tests/testthat/test_methods-XChromatograms.R
e5e8cdd675aec4f3b38ed7ef298e2960 *tests/testthat/test_methods-group-features.R
4d02d9dc12c9fcd30fbd69ed7ed05d2b *vignettes/LC-MS-feature-grouping.Rmd
1fff856c621467547f49f0553bffeb80 *vignettes/benchmarking.Rmd-notrun
aafc5573dca0caadffd05a1df539d645 *vignettes/biomed-central.csl
506a224797d06886d0887a8146a10dd3 *vignettes/new_functionality.Rmd-notrun
7ade214cb36f7702adfe598232033ad0 *vignettes/references.bib
ce1400d69d6912e58b3dc6fae527bfdf *vignettes/swath_tomato.Rmd_notrun
d6273475042e8e981e5643e3b23e534c *vignettes/xcms-direct-injection.Rmd
f3fe58bbaabc14a8c5315d8d538b587a *vignettes/xcms-lcms-ms.Rmd
05ad739f97ca905f6e3423faaa91743e *vignettes/xcms-lcms-ms.bioschemas.html
3cd00be48e2dae8f4e40a5d7cbf44902 *vignettes/xcms.Rmd
d434253c50af5f590082c4c8e34b730b *vignettes/xcms.bioschemas.html
