a50e1845f4f48b2377fd07e6b89501fc *DESCRIPTION
5497ef122e4b6f8088f30eaf50612655 *LICENSE
773f6563b0e662c5fece10fb22939236 *NAMESPACE
0504af98ef008432cd32ae5814afab26 *NEWS.md
8b1ff8fcf6f7d331b5544ddefdf5fb89 *R/HDF5NAdrop2matrix.R
76c9033f53770057c14d85d9f382e4db *R/helper_functions.R
70101e1b2d6b302eda1f7269daaf5dd8 *R/hmm_helper_functions.R
da0df0a6b93baaacd48539236c4aa1b0 *R/poolData.R
7e7d5e9a1ed7729cc123a6e49d3c2b7c *R/regionSummary.R
4776d639fb3eeaa0ef3ed8d57b66ef1c *R/sysdata.rda
d808ebf055f23b2836b5a49e0d0abf62 *R/tpEstimate.R
a2b9cd827603a1b62a31fce0138323ad *R/tpPlot.R
52e67f4fa1b5ce153529fd797ee3641f *R/transitProbs-class.R
7e7db4c0afc33383eeaba4052cf98411 *R/vmrseqFit.R
eb85b2c8d9bbcbc28a0d2de1d2f95358 *R/vmrseqOptimControl.R
70ae0fdb896cb611d780e186db41ffb1 *R/vmrseqSmooth.R
dd94d01ac4ab7d47f90d0442cef63d69 *README.md
2318f137d201fbf51601fa0faba6bef7 *README_files/libs/bootstrap/bootstrap-icons.css
1a51dfbe5467607389d603c02a77cd10 *README_files/libs/bootstrap/bootstrap-icons.woff
273f280ca7181a0026ae61842d453e7d *README_files/libs/bootstrap/bootstrap.min.css
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15f52a1ee547f2bdd46e56747332ca2d *README_files/libs/clipboard/clipboard.min.js
91bcf6cd1fd88fec3f109811e5fc3546 *README_files/libs/quarto-html/anchor.min.js
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d828775275749701b48bd9d958814111 *README_files/libs/quarto-html/tippy.umd.min.js
7712e82ad643fa9c9f05dfba78d2a45d *build/vignette.rds
e943bd65ff2bded3fbc8b545c4e1d0a5 *data/cell_1.rda
e2b4286483bc56d28f3be664215bc919 *data/cell_2.rda
6701e8f9e19ef6ba90b7ff59d7b36ab8 *data/cell_3.rda
3d245de04a90925f590b65725c66dcce *data/toy.gr.rda
e8128a9f5ba491d5873905505bf614f0 *data/toy.results.rda
e984fd172f79c750099281a4c372efbd *inst/CITATION
fd2b5a8bcf30c5242488ca411c946ed0 *inst/doc/vmrseq-vignette.R
e6ce898fdf2d1e268bb94ff1c7e9ed31 *inst/doc/vmrseq-vignette.Rmd
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a561a32a902393008c2110ccc905cb1f *inst/extdata/cell_1.csv
028d9b5266ac88ece3e639ee06bfc5f1 *inst/extdata/cell_2.csv
08b89bbf29d6c6bc2596965ade008de1 *inst/extdata/cell_3.csv
49add0b69931cc1752536e14450d3e63 *inst/extdata/toy/assays.h5
d14f9c8bccf2f3ec39f639b5b925d971 *inst/extdata/toy/se.rds
7e4e6aab468c10c32fb46dc22e24de7e *inst/script/extdata.txt
723d6da82b4367cd80a4a02e7c6b5c97 *man/HDF5NAdrop2matrix.Rd
a57407aa07fd0ffaa1383da2197afe68 *man/cell_1.Rd
09ed07592ffe41afc9b79698016db8db *man/cell_2.Rd
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69e4b4ab7d5eb4ec796599afd8ce6e56 *man/figures/method.png
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dd34cf35ced8f082b322e20a09d3beb9 *man/regionSummary.Rd
54081c041931a90637600140100eae09 *man/toy.gr.Rd
ef374d6682d5e33a0a87516d726e8b64 *man/toy.results.Rd
470663738379cab6bad25917191b4d40 *man/tpEstimate.Rd
ff3302d60ead2308ad843c981b006f1f *man/tpPlot.Rd
4ed14b068307af7944dcdb8f3d40a4e2 *man/vmrseqFit.Rd
d66868e81a305c022585b2326bc6bf56 *man/vmrseqOptimControl.Rd
349f580af7ae94fa9f415bccbe347374 *man/vmrseqSmooth.Rd
ce2fbe0e344be933c8d1bcd831ef75b5 *tests/testthat.R
33008a6b276ca49c7ec4ff9e6dd09d10 *tests/testthat/test-vmrseqOptimControl.R
e6ce898fdf2d1e268bb94ff1c7e9ed31 *vignettes/vmrseq-vignette.Rmd
