d218a6c0d9c2fcfb277c6778b56451d4 *DESCRIPTION
8b66fa1acfd8eb300ae096a352f481f5 *NAMESPACE
d017511814a32c5f88e06ba2ee9256da *NEWS
72a18ec18756d77dbad526e79d32c41f *R/ChipDataSet-class.R
6f14638d67424669de66655b9747a675 *R/ChipDataSet-generics.R
b5dc5b0e38ab2d31cf0a7caa8508100d *R/ChipDataSet-methods.R
85ae4a12418d554aed76a29985e866a6 *R/TranscriptionDataSet-class.R
60ad3bbc747e9b2d3a27491c3b1b374d *R/TranscriptionDataSet-generics.R
dd9588320b77d8d92604eab2d70545e6 *R/TranscriptionDataSet-methods.R
e4bd8ab5995060a66698be1417779c46 *R/show.R
9f29300f184cc084c1f0d2365a762a03 *R/utils.R
2d4d4c71dccece46f8401bf17d3c65ae *build/vignette.rds
4658c716fa582e260d123e46b4df9089 *data/annot.rda
33f3b8dc34c8ba6ab0a4daa3ea3aa37e *data/cds.rda
1b1ba5e803d213909fdfda9ee7ef6fd4 *data/datalist
ad6b7f2211a32a6cbb18b290303e8cad *data/tds.rda
835ee3aee8597c8cf65b65675a7c168a *inst/doc/transcriptR.R
3b36062fa7b29ac2c1ef2b22223187df *inst/doc/transcriptR.Rmd
5256277a21ba950442d5e14196d544e3 *inst/doc/transcriptR.html
d50801198a9fc94ca2d340ba90cf9e15 *inst/extdata/chip_reads.bam
b1bd75dd1f9641b9e89f1381a486d259 *inst/extdata/chip_reads.bam.bai
7f2999eb7940a0c31d83d3a39444a75b *inst/extdata/peaks.txt
b3efed05f16945956ab43ba1657823da *inst/extdata/rna_reads.bam
1b5a7ab4d4b50c588dc2b61806e1537f *inst/extdata/rna_reads.bam.bai
45ead3d64ef4f61df6c22fef91a9d41b *man/ChipDataSet-class.Rd
013bd5cf89c6e86bba175ce24af3b894 *man/TranscriptionDataSet-class.Rd
ca3790a26c2642ace282872f62608e65 *man/addFeature-methods.Rd
f4ebdeb58afe3eac09876f5c711bbb02 *man/annot.Rd
5ff4dbd7ec8655d027f3259aaedf6118 *man/annotateTranscripts-methods.Rd
ed07f5b364b99f1e0f6e59543284f3e9 *man/breakTranscriptsByPeaks-methods.Rd
7343c7009521e726fc363e2cc6d467b7 *man/cds.Rd
ec4a06850ddcb0f9e7ad876d9e9baed9 *man/constructCDS.Rd
8d4d016345ee7f9a1ec84465891d0239 *man/constructTDS.Rd
07e05c3da8ffa4140ca610e4ff0d5a82 *man/detectTranscripts-methods.Rd
3bdbd49fdb2d74f24da8cafcb2f16891 *man/estimateBackground-methods.Rd
7e0d2cb70402f74aceda476b2cae877e *man/estimateGapDistance-methods.Rd
a674f257bd2795d0fcbac4ad59c48fe5 *man/exportCoverage-methods.Rd
38c3cb76a04f455e5bacecd4f290dae9 *man/getConfusionMatrix-methods.Rd
79638dd6acbd9a62d61178f35de511bb *man/getGenomicAnnot-methods.Rd
bc29c271e5e1e21c5729e024173e71f1 *man/getPeaks-methods.Rd
a8631ff2a3317f3ff24a37e7dfd6dc01 *man/getPredictorSignificance-methods.Rd
60b92dccf346d160bf7cfcc0fb7e369c *man/getProbTreshold-methods.Rd
3b445e2cd10d040829791a038498bfbd *man/getQuadProb-methods.Rd
49e74fc7671e4ef68eab92b02110e944 *man/getTestedGapDistances-methods.Rd
6d3e82feb7f231d6cfbc02d43073c58d *man/getTranscripts-methods.Rd
3cda7418e1e6a4ec18a4f63d26e1bb52 *man/peaksToBed-methods.Rd
f82674175ed7b6e181a4c3e9428e539a *man/plotErrorRate-methods.Rd
c3e48440a0ce856ccdb8b8b4cda6fa3e *man/plotFeatures-methods.Rd
d67b6232ead0420dc0d4e67ebcadfb60 *man/plotGenomicAnnot-methods.Rd
2eb7405ba63c9e78e4727f21ae908e8c *man/plotROC-methods.Rd
6af8349b9208af3a50c238f3c2dd9c55 *man/predictStrand-methods.Rd
bf1616091dc1bc7837204e9bd6238e32 *man/predictTssOverlap-methods.Rd
c1e6c390c1ce2d29384e8f76b88cf17b *man/show.Rd
fc0ba52fbb43815b5f072d687a255e6c *man/tds.Rd
73e257fecd83d6f164e1ee69778fc8f2 *man/transcriptsToBed-methods.Rd
001e83064af681039550030c0b190cd8 *tests/testthat.R
bfa6125f76c6dd8d6bb08fd0db4e0d1e *tests/testthat/test-ChipDataSet-methods.R
bdfd930cea78db55247b2ed331b04d78 *tests/testthat/test-TranscriptionDataSet-methods.R
0881263e5aeef87dcef8bc549d9a7046 *tests/testthat/test-objects.R
d38a0471ef63cb6613e7520ff56ab992 *vignettes/images/Average_RNAseq_signal_across_peak_region.png
5ad4edb7fbc29220a56136973a450380 *vignettes/images/Gene_associated_peak_prediction.png
2179acad2c1a36e082834207a53d1e79 *vignettes/images/Main_scheme.png
6071e9a6b3dc0d413839b0cd1f43b99c *vignettes/images/Peak_strandedness_prediction.png
3b36062fa7b29ac2c1ef2b22223187df *vignettes/transcriptR.Rmd
3730fdd1f4ba1845ae8f882c4f30f6f5 *vignettes/transcriptR.bib
