7330218c752cea56572a89c19c28bcfe *DESCRIPTION
2ba9feee5cf8573205622deb5086aa35 *NAMESPACE
96c9d75e98939db4f6f818a0602ca887 *R/AllClasses.R
c4c4405e4b01467ecbc4a02db7ae9a52 *R/AllGenerics.R
bc58b2adf6188de62a14ffcd446f2d47 *R/PMindex.R
81affcd7da1c5ef1a5fbace129806cb2 *R/comparisonPlot.R
4e5502161d9cd6752422df6999fd4093 *R/confint.segmentation.R
ef03d345aac9e6c94b87a13e319f726d *R/costMatrix.R
6c5a1545d78bbcef69aa3861b722a797 *R/findsegments.R
fdd0f8b1cdf57d316ca59a90319e9872 *R/grid.image.R
53b3750ec8b7df8e6c4b3e9a2caa5aa1 *R/methods-segmentation.R
f4fcc8802c6513a8f48d80313cf85ed8 *R/normalizeByReference.R
625361a3afd8b30a2e5af59a638c3587 *R/otherStrand.R
7b5667ada6d7cef27e36894b8f56895f *R/plotAlongChrom.R
1cd00c0d1f9f7f7be7ceb5f4b4ab6b69 *R/plotAlongChromLegend.R
d584e49e02f4dfecf1be494542b0301f *R/plotPenLL.R
6a810971f03bba72e70d9efe50a3ec88 *R/plotSegmentationDots.R
40a8c6906cc7971389b4a1bd49728b9f *R/plotSegmentationHeatmap.R
b778489d81c61eba8239b196bca33020 *R/posMin.R
c6b9eb230f93c98fad6a98631052088f *R/qcPlots.R
d16005062da43c271d5a730a860618f4 *R/raster.image.R
6e9461e160095f4d9d698afc93bdca23 *R/readCel2eSet.R
c6cb36f7f99ae620c6fa213fdf3dff70 *R/sampleStep.R
024fb949b5667c2172311a9529093836 *R/segChrom.R
d63334d8f370dc83e18083d7622ba41e *R/zzz.R
79bed470917c1c027b6391cc14d7100e *build/vignette.rds
9b06d760239ac24159666af19ce260ea *data/gffSub.rda
2ed3cfc4800c07495b7d190b617c0abd *data/segnf.rda
a7ec78583fc1005ce5b0951f320503a2 *inst/CITATION
bff2a2bb302add20e97bb6729bc3d129 *inst/doc/assessNorm.Rnw
ab1404c3310b20953488ce09ac6904c8 *inst/doc/assessNorm.pdf
4f73805f4284d4ad9eace7b5bc526bd4 *inst/doc/costMatrix.Rnw
d1e471ce0aff638a259b6757d4f1583a *inst/doc/costMatrix.pdf
87d168bb700222a7c836a281b140b6e9 *inst/doc/findsegments.R
97395bcc96ddf8f9d3c6f6a7d3942be4 *inst/doc/findsegments.Rnw
6b7b1f787bf3434812a3cf1ab6945628 *inst/doc/findsegments.pdf
3c1fb4ad0a8e25b3d39fe6f1d6a9c619 *inst/doc/plotAlongChrom.R
27e694b0b80e8ac9eadd67a5380c3a8f *inst/doc/plotAlongChrom.Rnw
0872bde73939b4578c3acdf4c9fc6512 *inst/doc/plotAlongChrom.pdf
9945e32940859c31e359996b9d59ac13 *inst/doc/segmentation.Rnw
356af74d08fa6b3642a5f169d6c61341 *inst/doc/segmentation.pdf
a7912dfd42b098d5deb89b2d9cc34c6b *inst/scripts/createNormIntensitiesFlatfile.R
852148e648462836aa26fb1eb0416446 *inst/scripts/marina.R
b489f3cb57fd3c93fcec128e469df226 *inst/scripts/segVariance.Rnw
4aa4bd3d6bd0f1aa2b8084954f502000 *inst/scripts/testSegmentationConfint.R
02c6bbe5626aea34e59f09046739758f *inst/vignettes/assessNorm.Rnw
ab1404c3310b20953488ce09ac6904c8 *inst/vignettes/assessNorm.pdf
b3ac4fee6048750775b9397275043098 *inst/vignettes/segmentation.Rnw
356af74d08fa6b3642a5f169d6c61341 *inst/vignettes/segmentation.pdf
4ae2ca7a01a19daee52ca7b17175cea5 *man/PMindex.Rd
92299f29f469695d576f5416dc59d5c1 *man/breakpointsPretend.Rd
801a55ae082bb28f151866733fca5393 *man/class-segmentation.Rd
3a1415ceaf5353ff4b1b9072bd402dea *man/comparisonPlot.Rd
fc3827802e0373fd8ad58bd2a5e29996 *man/costMatrix.Rd
1a9960b0ba16ce25d15813f0baec002e *man/findsegments.Rd
ca954044dfcf4a8faa5b1c662de13e00 *man/gffSub.Rd
acc8f3294becc9732df0e98e66fefc5e *man/normalizeByReference.Rd
e2e831e4d7e57aa38e736e1714e0ad4c *man/otherStrand.Rd
a84d40f941ed7ca590d168b6e5432a9c *man/plotAlongChrom.Rd
2c23aa928bb854c22538fc81b6cfe50d *man/plotAlongChromLegend.Rd
7481ae3b1a212f26f0f1de0df75461aa *man/plotFeatures.Rd
b4123ad2c991f9a04614bea78022401c *man/plotSegmentationDots.Rd
c430d0a0dc741423efeed6664e9ccd42 *man/plotSegmentationHeatmap.Rd
5e06b2273953e71260fbe35823dd0ed4 *man/plotpenLL.Rd
2202bb6760f7e39cf5add5ccdc204144 *man/posMin.Rd
4b49f2d91125782983d4f72f2d21b26b *man/qcPlots.Rd
0d36ae113e5566a8c148c8ba03706ad5 *man/readCel2eSet.Rd
61aec9632470b7e41d93d811a55882e1 *man/sampleStep.Rd
ac766dc66dd3c0b6ad79d6454651c6f3 *man/segChrom.Rd
b65c89d0b044fe9aca66a4dc0da350db *man/segment.Rd
44920b671bad58072826fa5611e44739 *man/segnf.Rd
a13fd5e255e495e6a435f8be12b03f1d *man/tilingArray-package.Rd
1d7b95438da6b0011bd5b001d9cd520e *src/findsegments.c
c4d9020101449af3f311d0c07a533cf8 *src/sampleStep.c
07b81b779d1851b76ef9517ccfe91964 *vignettes/Makefile
bff2a2bb302add20e97bb6729bc3d129 *vignettes/assessNorm.Rnw
4f73805f4284d4ad9eace7b5bc526bd4 *vignettes/costMatrix.Rnw
97395bcc96ddf8f9d3c6f6a7d3942be4 *vignettes/findsegments.Rnw
27e694b0b80e8ac9eadd67a5380c3a8f *vignettes/plotAlongChrom.Rnw
9945e32940859c31e359996b9d59ac13 *vignettes/segmentation.Rnw
