e9fad545bff13af7d20317c7e69ca028 *DESCRIPTION
a113ac412776fd1dda7865509d66be0e *LICENSE
fc0bf137b8e6b7c28cb9b840ce7e798c *NAMESPACE
00f57da63a2fe94c1f73e2a07d77d1bf *NEWS.md
1a1828d291318a8957c9895000b2d32c *R/data.R
80898c7048a87ce64c029533c1d527ab *R/functions.R
4421240d25b2615111cbd7696135d591 *R/globals.R
6cc404f11ffc1bc69e7626336044e405 *README.md
10aa2bb75edc989223358f0c59725b48 *build/vignette.rds
1ab692374bb32c5a4747275c6839b241 *data/humanGBMsampleAC.rda
7de5344b5ab8463f8d025243bebc7af7 *data/initialStartProbabilities.rda
fc8363f74684e85e2bd4eb1b5cecb0b3 *inst/CITATION
b656b8515cb916fca2eadc35e16d5ac7 *inst/doc/tLOH_vignette.R
de31864f58f1c0f8cc5c52f730afb490 *inst/doc/tLOH_vignette.Rmd
f85d3a873afed175e0ba16b99c4d4c22 *inst/doc/tLOH_vignette.html
8a0b544c9aa6a5514b8c0b3e46a3f345 *inst/extdata/Example.vcf.gz
af274e72d679017fbf819b12888c9905 *inst/extdata/Example_aggregateCHRPlot.png
cc895d2b7c4fc855a5cf675c97930649 *inst/extdata/Example_alleleFrequencyPlot.png
a5fd4e12e7f44445646d6e8871f6ea23 *inst/extdata/bayesFactor.png
5a45259eda018ddb1c08f83ecde2d0b0 *man/aggregateCHRPlot.Rd
d0c9cc6d14cacb83d9b78232e2ed8754 *man/alleleFrequencyPlot.Rd
9c5c7d2b447d0c81485b8cd3aab6e875 *man/documentErrorRegions.Rd
6e88ffd855f8fced5afd4d16ea2ee2f0 *man/hiddenMarkovAnalysis.Rd
41ad2f77a3e2229c42cd481f8b1dd1ca *man/humanGBMsampleAC.Rd
052a3f684799732de32031c258ad5566 *man/initialStartProbabilities.Rd
01dff13167a5c3bfbade876a87d20016 *man/marginalLikelihoodM1.Rd
5a4f43f4e279e49bd9f74fec72204a27 *man/marginalLikelihoodM2.Rd
cb875cf2db2fd323204c194c01c4a7c4 *man/marginalM1Calc.Rd
7722c31fa5ec9f2e072973565d559c62 *man/marginalM2CalcBHET.Rd
5b5e49230cfc6e797bf6d7bc9d9c34cf *man/marginalM2CalcBLOH.Rd
2a3eeaee6b8a2030b6aacc01aa66c305 *man/modePeakCalc.Rd
89660405ce1d1ac0200b6ce353aa6ef1 *man/prepareHMMdataframes.Rd
cbd90d35ff8fbac1ff64899bacec2209 *man/regionAnalysis.Rd
98cc16442502a492c433694da87c23c3 *man/regionFinalize.Rd
1750e600193c7666d70fcf52abec615f *man/removeOutlierFromCalc.Rd
ab15b44aed9efb981e99cf6eb8acd1ce *man/runHMM_1.Rd
d03c5c80d95c2bb08657fa829ebf7f3c *man/runHMM_2.Rd
a68ff20e4a37746a4059e02f81480fdd *man/runHMM_3.Rd
0d91b44e288c196a80e84a218e936797 *man/splitByChromosome.Rd
223672c1f3546b2c8caa4efaa2de1c6c *man/summarizeRegions1.Rd
a68b88d247283c81709e3cbb37fe28db *man/summarizeRegions2.Rd
9560e46ab314a7fd10a528ee710b979c *man/tLOHCalc.Rd
19c8dcc22101294031dbd5fa2abc66e4 *man/tLOHCalcUpdate.Rd
f87196c4b1d74adcb0880970b9e60987 *man/tLOHDataImport.Rd
de31864f58f1c0f8cc5c52f730afb490 *vignettes/tLOH_vignette.Rmd
