61cf845636f8d35198f394f697693903 *DESCRIPTION
d00d099c18d809e93f2d77f6df7693ad *LICENSE
96a9ad378f80b3b7ba45a422120ec797 *NAMESPACE
5a74bb3b9543cb58f4930f7908ab72c8 *NEWS.md
6d88671ab78587dfa98d5d7d12cd2811 *R/align_org_prts.R
8e944ccd961af8248f0dc4d272039670 *R/align_prts.R
a3f6dbed5e0c0f7d9a0df0e297faff50 *R/check_tmhmm_install.R
aaecdad65ee26cb98a6fdcebfe2bbcd5 *R/clean_data.R
3f486cb3a4cd48016f515b7f0808c53d *R/ensembl_db_retrieval.R
0af391010d0ce54b792ada2576e05eed *R/format_ids.R
d4d5692bf73be2b6c11fbad2ec45613a *R/get_aas.R
1d4ff3b0d92aa699c4915564b867e9ed *R/get_pairs.R
54764252d92e7c74a10025ca8de8108a *R/get_phobius.R
032e6d950b4cf5e7a440a9f79dfffab7 *R/get_prts.R
714245b5b22999143d5a12234b1f2306 *R/get_tmhmm.R
aa7c7b7780ac3c22013e795a5b31c433 *R/graph_from_aas.R
ab42d44668f2acc7489df76ddacf71b1 *R/graph_from_ids.R
56f88cfcb11cd924f4d46d8c795ca3cb *R/graph_prots.R
f3baf35eea450c8efda9bf80310d8342 *R/merge_trans.R
50415ff1570959afcfa145a8f5a77055 *R/plot_isoforms.R
e06903de7a363d245f7e43b90bd23579 *R/process_tmhmm.R
5752a3bc35320b6a0fd143ba66ee7a3b *R/rank_prts.R
8b24cac4ed754dc79f187de63bb58311 *R/run_phobius.R
f5d4bfe5b85f9788d637975b682217f2 *R/split_fasta.R
b8c3a6daeaf20f06b7d395f4c214365a *R/sysdata.rda
b2fe622d906f0a2a65f54bf00831fa32 *R/test_surfaltr.R
504fc563d07252e84f081ea57d4a1626 *R/tmhmm_fix_path.R
cff52ccdd114f5bfc6a5112f6e3c0449 *README.md
2ddca7d38d6c5c477f83e2ffe5e0a7bc *build/vignette.rds
a8bd07709d5291524eedf7d61f104a30 *inst/doc/surfaltr_vignette.R
dac35f657cda791a83b13a21a582afdc *inst/doc/surfaltr_vignette.Rmd
275522e557ae46a39c8bb3acb1e12b6d *inst/doc/surfaltr_vignette.html
542a2aded0dbf5e1c8961ee4719b389c *inst/extdata/CRB1.csv
db36e290c3f6a17cc7bb83315a5b2902 *inst/extdata/crb1_example.csv
9f5fb4a4ba746de69f8f43ef27cb6b14 *inst/extdata/hpa_example.csv
5844faf9fe6aaf6a936df0d1b877c27c *inst/extdata/hpa_genes.csv
0bf993f40d31ed4245b80abccd77c3f9 *inst/extdata/hpa_mouse_example.csv
4ee7c2f464e1e62eb6797d4c32f4491f *man/Crb1.Rd
bb88cacd34e4d7ab62e73d1448134540 *man/align_org_prts.Rd
1f0d93898fb1cb368bcfc77bfea131bf *man/align_prts.Rd
10ed9a84b4dee65c660b20db58fd2c69 *man/check_tmhmm_install.Rd
eb5268c89e86b334d7e2dcf12e749319 *man/clean_data.Rd
973a5788e9094c270114c8c3ee032373 *man/ensembl_db_retrieval.Rd
cc7146828ac4758c1c113e8e0569875c *man/format_ids.Rd
67044a61762f7ba9fcc616edc25b9930 *man/get_aas.Rd
8ebab23b917b7ba0c71d5d341232db92 *man/get_pairs.Rd
379ef60ae2b0bbd6588c4c43d49979cf *man/get_phobius.Rd
2fa34316ae7c97d6272e96e727973559 *man/get_prts.Rd
dd6a77f59198088bbee01e6fbee3c30d *man/get_tmhmm.Rd
ad1429dc2568ba8e09e77c482eaa322a *man/graph_from_aas.Rd
82c1aa8dd4e872e1bf64a16c7efd7e79 *man/graph_from_ids.Rd
1f9bcbea11244a4081ee5dadfc440ebd *man/graph_prots.Rd
7b8489af65851c85ec8d6a8710f94dec *man/hpa_genes.Rd
11cce6bdf860cdc349b7c0fdc259cd72 *man/hpa_mouse_genes.Rd
1adcd32204fbe6efe1ecb986027c0199 *man/merge_trans.Rd
8f3df22d59aa8a0c9f0d495924cc02c9 *man/plot_isoforms.Rd
7e2e131f7a11df66f8ca3f247548da4a *man/process_tmhmm.Rd
5eec833d612e988838b81e550d4256fa *man/rank_prts.Rd
922b937226b04e5d3b80097c27df950e *man/run_phobius.Rd
a8e2830a966b3ad9cfaa4e6993a532b7 *man/split_fasta.Rd
4461996f4223278b5e8d5b46590b1492 *man/test_surfaltr.Rd
91778d66521eed7f2f399276439c5361 *man/tmhmm_fix_path.Rd
89a920da1046fd8ac46b9f69c625a8f5 *tests/testthat.R
b8c3a6daeaf20f06b7d395f4c214365a *tests/testthat/sysdata.rda
670c0348c541d55b16fa3f10f7fd1d07 *tests/testthat/test_surfaltr.R
542a2aded0dbf5e1c8961ee4719b389c *vignettes/CRB1.csv
f36483d7c4229cf94eef3106d11580ea *vignettes/CRB1_fasta_ss.PNG
edc09234ba1218d1e8cc42d41cc2c516 *vignettes/Combo_Table.csv
50d41080e720df268088bb1c3f911966 *vignettes/Figure_1.png
20586440f12c43015c90301aa2c8730b *vignettes/Figure_2.png
1cb8a0353c49c2a67805c9408b470f09 *vignettes/Figure_3.png
76f1c5cb5812955d4177454d8c5b6359 *vignettes/Figure_4.png
cbb74168a7201a443c6981dd03d341d3 *vignettes/Figure_5.png
4eae6fb15437a9f420c2ceb920ce21b7 *vignettes/Format_Table.csv
d2c5060280af7405c556b0de6b0c8e7d *vignettes/Input_Table.csv
aecf995b9b0435a3385089635b190ab0 *vignettes/TM_Table.csv
c55e35befcec0f3fee6c8004473d61fb *vignettes/crb1_output.PNG
5844faf9fe6aaf6a936df0d1b877c27c *vignettes/hpa_genes.csv
e0fa20df4501dc6e0368af9eb5f07a8b *vignettes/nature-no-et-al.csl
90ea0a97b399fff7fb995ee7eb841ea7 *vignettes/output/AA.fasta
8ae2377714843f78d177443eab66bd05 *vignettes/output/transcript_pairs.csv
6a94899acb47173935f8199b2aa83166 *vignettes/rsconnect/surfaltr_vignette.dcf
dac35f657cda791a83b13a21a582afdc *vignettes/surfaltr_vignette.Rmd
c3f2c977ffcd65661d07c124d79af350 *vignettes/surfaltrbib.bib
