b1b740fb3acade84b88283d58bcd4cee *DESCRIPTION
22307bb81e7159657c4f2a006e6545c4 *NAMESPACE
4dee8771fec755d1444caa78fb2e97bb *NEWS
04d5db5036fe7b24417ab38479094357 *R/aaa.R
d1aefd7280737419ccd66aa9bd572184 *R/calculateStrandCoverage.R
752e3a7139e3f21f93b97ce2a5cfb969 *R/calculateStrandNbReads.R
3975ea1399bcfc5ec813817e03615508 *R/checkPairedEnd.R
c92a9c3c00e58dbe6f5238150302e5d3 *R/concatenateAlignments.R
11ef43c5790b2fa2878cab8e91716fea *R/filterDNA.R
246bf9238fff518ecfc3ab8122e30cf3 *R/getStrandFromBamFile.R
9224c52a111b185e469a053143b5e38c *R/getStrandFromReadInfo.R
253995b4b455ab1ef7e6d23eb524a835 *R/getWinInSequence.R
6b04b33ac1d88606970176dc07a47f60 *R/getWinOverlapEachIRange.R
79ea3c9cf71c0be638b08e9c268b206a *R/getWinOverlapEachReadFragment.R
d7dbfdcb47de1a50ba26f5028c9b9e06 *R/getWinOverlapGRanges.R
1bda4de1bedfab36a7b2519880ff79d5 *R/intersectWithFeature.R
9822133de9c27a0a24d762d8cd623525 *R/keptProbaWin.R
7d76aa0653363f2621e144686ce24b47 *R/keptReadFragment.R
a7f00a90a108cd41284ce21c232567d1 *R/plotHist.R
ae2d7f799d21fb61a5b97d788bd1c8d4 *R/plotWin.R
c39ca801858ee5581644f561c054d8e0 *R/sequenceInfoInPartition.R
7c84b48a14818609cbf8b5ca142bff2a *R/strandCheckR-package.R
f47120dce0c697a919d3bf7388e38279 *R/summarizeHist.R
f49d596a06587a42f90688292001e20e *README.md
0959c38919fabf1ee32a0bf22d8b3a70 *build/vignette.rds
64dafe6418f54143633de8e4a0f097b9 *inst/CITATION
38585488cd72013489b1f5f2fac01721 *inst/doc/strandCheckR.R
23eae0ccfdcc4ca017b70b961d4e1a9e *inst/doc/strandCheckR.Rmd
00edfc25bd509948a415d95fee2ff4ef *inst/doc/strandCheckR.html
ed5b094495e4e83d6c68004d9d3715b0 *inst/extdata/paired.bam
14fcdde3cd6e13a3cdec05a54a49df80 *inst/extdata/paired.bam.bai
87b830c5c67d3216845c9448e4fa5956 *inst/extdata/s1.sorted.bam
50d445561527631d7b59846854983f62 *inst/extdata/s1.sorted.bam.bai
d316a25ab0fa5a6017e307a9b9417862 *inst/extdata/s2.sorted.bam
4d1f004683222525a28bbaa019ce06c6 *inst/extdata/s2.sorted.bam.bai
13a8a0e09667e83fad5eafecdcf260ef *man/checkPairedEnd.Rd
6bcbae0944d05299a41e5ea32fd2b7a4 *man/dot-calculateStrandCoverage.Rd
54471d63a824223612267cb72323a1dc *man/dot-calculateStrandNbReads.Rd
92ec172b6c362fdc48445a599e46c824 *man/dot-concatenateAlignments.Rd
3d425eafb7847c558cc1885c03257f8b *man/dot-getWinInSequence.Rd
00a15729fd121fd84faf2e9b7fe020a7 *man/dot-keptProbaWin.Rd
e13c4185461ca05152f06f50b9da2bf2 *man/dot-keptReadFragment.Rd
2cec2e360a893d25c49cad0cec5339eb *man/dot-sequenceInfoInPartition.Rd
08f20f4139ccd85ff55c536bde4780f8 *man/dot-summarizeHist.Rd
51fbb0d21d78ca08a2c7ee5037458173 *man/filterDNA.Rd
8fe940b99fa14d0093f32f2a799dda5c *man/getStrandFromBamFile.Rd
63d6e142c34d3f59f7ac83a7a31ba5bc *man/getStrandFromReadInfo.Rd
ea8c5e17c2ba0332678f8085559e7b3d *man/getWinOverlapEachIRange.Rd
7343e2c91f8fbc1c9b5d4d01e01e724a *man/getWinOverlapEachReadFragment.Rd
85e48dcb25c31e32a09ac7496f7aebe5 *man/getWinOverlapGRanges.Rd
35819c8462931f03af0e12d66e100138 *man/intersectWithFeature.Rd
7a04d63bfa35326faf7730340ba90893 *man/plotHist.Rd
031314bdf6d4c8a1dc4fc5fc0d0c90a7 *man/plotWin.Rd
c43e29661fae164ab66e40bc0309975b *man/strandCheckR-package.Rd
f35d8fb761148d716dd03ea4c84189e4 *tests/testthat.R
17a79df66879742177f211b1dadf6bff *tests/testthat/test_calculateStrandCoverage.R
539a72024b8e4178c281d22b89ad83ad *tests/testthat/test_calculateStrandNbReads.R
4059dd3efb985d15ec4c3f80cd9c5a58 *tests/testthat/test_checkPairedEnd.R
399d5820ac71119eb66b2c409365e6f3 *tests/testthat/test_concatenateAlignments.R
38d613bb1b38c0ccef8470608c8ebb35 *tests/testthat/test_filterDNA.R
acf6d169c4c1b39bdfd974a150fc1c7c *tests/testthat/test_getStrandFromBamFile.R
05ef822c72c57393775b589ca60baa33 *tests/testthat/test_getStrandFromReadInfo.R
5044a16b7bf1872242501eb628418c90 *tests/testthat/test_getWinIdFromIRanges.R
c1c96b14d68c3a65a366395c8bacb8eb *tests/testthat/test_getWinIdOverlapAlignments.R
7cf85a5fc273600dda674ca169db8cd1 *tests/testthat/test_getWinInSequence.R
c453d55cef7de238813640d12f4d1168 *tests/testthat/test_keptProbaWin.R
66da6766daf2beae5d03b64045be0ba7 *tests/testthat/test_keptReadFragment.R
f6859b3783aed7d70d29688158717b41 *tests/testthat/test_plotHist.R
8d4c336f301b87f952e5d7acc7234137 *tests/testthat/test_plotWin.R
24676ec896cf34cd028fbcfc40b2304b *tests/testthat/test_sequenceInfoInPartition.R
2f502ee57f29bece96997e33e9ca8ab7 *tests/testthat/test_summarizeHist.R
23eae0ccfdcc4ca017b70b961d4e1a9e *vignettes/strandCheckR.Rmd
