94604be60121e13f66c85a4a5807e5c0 *DESCRIPTION
9cb2202467214d249deda12d3696dc16 *NAMESPACE
67377d2a551655b00700b1750233fc3f *NEWS
bacd032ac4cfb5a6c5471c3bef9858e9 *R/AllClasses.R
d455cd1d4dfe86e44f718ce280b59a70 *R/AllGenerics.R
da20b4b9ea64c1146b98274eb7f7c1db *R/helper.R
e0aca7b794c1b6f55222789bb86bfc21 *build/vignette.rds
f578845a64169288fce3f5b60a281c09 *data/ssviz.rda
e51a93701c8c409c604f4be41bd4a98f *inst/doc/ssviz.R
1eab9bcaef333724a23abcc69e888841 *inst/doc/ssviz.Rnw
a4451a46bf89b093c183444f2ef7da09 *inst/doc/ssviz.pdf
6d649fed48fd4cecd316b84ef24b8544 *inst/extdata/ctrl.bam
b2ec970de4202c6fe64b0d8795c6ce4f *inst/extdata/treat.bam
721fab1b743e20f243a75f806fab5bee *man/counts.Rd
e61da28017e6428f77d4ccdd0a727fd6 *man/ctrlbam.Rd
718856e4e47f191f400b7b34c5e243bc *man/getCountMatrix-methods.Rd
2769a3b609291b1337f1a0847ce08f12 *man/getCountMatrix.Rd
146c886aec3393ee567d4edbb29f18e1 *man/logicalORmissing-class.Rd
31809d5ce6308691d3f414984c7c604d *man/ntfreq-methods.Rd
0156819c0b43afc7862c4e14a4e1dc7d *man/ntfreq.Rd
f3e239e05e7159752229cbaad3e4af84 *man/pctrlbam.Rd
b15101e70cdf35a7713442a3261b6d93 *man/pingpong-methods.Rd
0691ae8b919091be0ce7fb31b9dcf06d *man/pingpong.Rd
4d882095b92be76a53c2267d1b6bc38b *man/plotDistro-methods.Rd
55c56d61474f27e532fa7b3dfaba99d5 *man/plotDistro.Rd
7d685671bcc0f9c31943476723d4d80a *man/plotFreq-methods.Rd
88fe193dd1987f0fd66c8b7dabccf2be *man/plotFreq.Rd
1b18978ba320f6d4a769ebb3e3404914 *man/plotPP-methods.Rd
fb4ca9f03f78a7cfd84fb83a6c1df122 *man/plotPP.Rd
94ef9462f5709514d81c12ae48ca8ea0 *man/plotRegion-methods.Rd
3c9cfd34d83aacea151136ccbc976cd1 *man/plotRegion.Rd
0886680dd09b1578a04b41e441be0a5a *man/ptreatbam.Rd
2fdda7301f6ef66fdfc1d36baefefedc *man/readBam-methods.Rd
8591f86df41b9e85ed7477b349759b78 *man/readBam.Rd
a87204fbe9225f1ad4af2d261fbfb14f *man/ssviz-package.Rd
9b11264769868c0f9f4b4bf272ae18fd *man/treatbam.Rd
fa2c7a0459c9d270703d4a5eb443e259 *vignettes/pingpong.png
acfc64e769459343bea9c404c5e8952a *vignettes/plotdistro1.png
b7b298ea96a9f9e01f17c0ae64346973 *vignettes/plotdistro2.png
93299cafe5c0b86e234605f6dba32ff4 *vignettes/plotfreq.png
d81d6f3dc241a82109bea166ffe0ebcc *vignettes/plotregion.png
1eab9bcaef333724a23abcc69e888841 *vignettes/ssviz.Rnw
541728147b95fcd0cb4abf56a2a97a08 *vignettes/workflow.png
