1668c348bc3a4ea828653764f7a8d7cc *DESCRIPTION
12a1ab3c590b66d7608634c588a8bef2 *NAMESPACE
d303151886d3bfb65715a38a5243fd2c *R/EBAM-class.R
cc4123b4bd415c53228fc49f915ed0da *R/FindA0-class.R
4fd27c1f36a1a7ec21f10e4f518b853b *R/Rfold.cal.R
3a6fc3c6a7b1acc292c443bda3db5f30 *R/SAM-class.R
3930354716cc5ef776799390060e10bf *R/add.target2href.R
92380609ed396d0ab13ef1fe269459dd *R/adjust.for.mt.R
1dfaa712768f16d4178955524c2697b5 *R/args.ebam.R
edb1b2098dac73ce3b893ebf3bf876e7 *R/args.finda0.R
c8ca1ebd7c4e976dd1dd95fb9c2f699e *R/args.sam.R
b063f66ed1264427e1007cdee8e01e2a *R/build.dperm.R
86302138603c0b8a3a4b1321fcf4e25d *R/cat.ebam.R
2d3517122a7be6bbcd89f61ab36a0c1e *R/cat.null.R
c553a30de3185ff4412adbe038170650 *R/cat.null.approx.R
0ce1f7d1f53ffed8e954e917bb2800f4 *R/cat.null.approx2.R
2a7a5a7aa0601ace428518def956e26e *R/cat.stat.R
ef6af96b3debdd2bef698a3c6d2a9286 *R/check.chipname.R
bbedcfe7124b0617f1a9d9034e4bfaee *R/checkA0.R
902ff6191677e5132fd7a81d102323e5 *R/checkDBs.R
72abab0963864712f7c8fe79e9719596 *R/checkFUNout.R
c6ccf2db04e99da7398f00f44ce36e6b *R/checkInitialDelta.R
0b21156575bef93ff9c68fd3ead3825b *R/checkQuantiles.R
14e8d90b268ffd21cfc45fb6d789f0a0 *R/chisq.ebam.R
1deba7149506ea38d61e889824f9cc0e *R/chisq.stat.R
e69394185fcb7d63029d6ed1a9c3df2b *R/chisqClass.R
7da83cc9167d1070b0c8641ef053027d *R/chisqClassSplitted.R
6c83928812bd4585b9af9edeec79143b *R/col2hex.R
45439ac6f7f9ea73af43c7f7b96f27a1 *R/compFailure.R
9ef3faa80a9f31af67674fbb02e78fa3 *R/compFailureMat2.R
ba97fff9778c64d84086ccf20f3c339c *R/compFailureSubset.R
7b6bfa1a2b6a08fc3a1d56c82f2ad292 *R/compFalse.R
fea1590d70eee286974927b65c2ddc9e *R/compNumber.R
4e6c4cb041f0c96a1cf56f7bde4e31b8 *R/compPermStat.R
b48245e258b0acf5b51e3f4231aabc86 *R/compRatio.R
418d3b717936745b4d85fdecce096a83 *R/computeContCols.R
3186c09cf5c9f4d638868ec66daa7149 *R/computeRS.R
be5abf86b4e10c13226f699802c79e77 *R/d.null.R
50991135b66bc39a4e4ad1e37a1871eb *R/d.stat.R
891f52aea26f47d7aee890a67af69dcb *R/delta.plot.R
782f4a054470d705e286c059739c784d *R/denspr.R
5d6d7bcd84359dc6224c1ccaa3f07b25 *R/ebam.R
050516f8ce538e7dd5d25b9e4ee6c28e *R/ebam2excel.R
442481fe3393ad77be6456ecc021a2f3 *R/ebam2html.R
f42f274222ab00efaefe765f0c613a09 *R/ebamA0.R
fff4811f46aa28e2caa65c4973ffd761 *R/find.a0.R
ec52db847e3740d393c9bcafa662cfe9 *R/findDelta.R
1b3a0c22bf1407d44ae713cb7096e444 *R/findFDR.R
d030ee661253ae0453640381694b7324 *R/findNumber.R
f7438fad95249826d3bde4e5ca25e73b *R/finda02html.R
a946099eb0654b1fade2dd7870d7a05a *R/formatSAM.R
a475fe9a7e6eb6619c4d017320bbd9f3 *R/fudge2.R
1a8bcf1018cd42ab8a20f90416e0347c *R/fuzzy.ebam.R
2d686db2eb5ed67b86faaca64cce0dc5 *R/fuzzy.stat.R
a1297f2a6effded747843408b7fef58b *R/getFailure.R
d148e98e394967501696a0db30675fa8 *R/getQuantiles.R
54aa008562a7e5bb9c2a3609d30108b3 *R/getSuccesses.R
5856dd94f9f1f7fdde4ad7d0702d0cbd *R/getTD4Affy.R
894426a4a4e98b7fb18dbdc4c6b2eda8 *R/getTD4rs.R
91b2c52430fecb6dc24765c881ff3c86 *R/help.ebam.R
551893b113e387f81441a52c5ee24cf6 *R/help.finda0.R
fbe5cdb1908595ba857a484411b68486 *R/help.sam.R
211c4765084c16bc47675ba18a3f1d58 *R/limma2sam.R
75bd318056998617e7e81eeb74fd70f3 *R/link.genes.R
45f824384c1fdbf4e7b4ab97fb7f212f *R/link.siggenes.R
889920ff0f49d695b3f6428210dcba84 *R/list.siggenes.R
e81f0b45fe606ef0e9b79e6968d19846 *R/make.tablecode.R
70f2f9a2ec6c652346c84ef5e178f41f *R/makeA0mat.R
b31d242ef70117fda7066383013769ed *R/md.plot.R
df5483228a69c5b0071f9260e7e4b86e *R/na.handling.R
a88098786c8c686e4f118663e0f3d7ed *R/na.replace.cont.R
c39437ee3aa1aa2ea168b14ab46c7ee2 *R/nclass.wand.R
c611d8c03eca564d3873585d2bf6a434 *R/pairt.cl.transform.R
2c5683ee37eb102d7deaf2a3a4db2732 *R/pairt.samp.R
876e1d85bd76b177538c0bc4b32a1f30 *R/pairt.samp.transform.R
2d3c341a25994828e2176ab718f0ce1e *R/pi0.est.R
ed046dec0f5ed2c8b8e6f6ed2b00d1d6 *R/pi0.est2.R
2a6e865570278addc181511a22c9392a *R/pi0.est3.R
a0889efd5b9ecb712e5d1cbe19df0921 *R/plotArguments.R
3188c6c84c688a88c6c68ea0baaf1c59 *R/plotFindArguments.R
b6e76b8b60b7d9e9007866257c242041 *R/quantiles.R
8ee14376922a957f9b5b426254a77364 *R/qvalue.cal.R
fd7159311fe5cf51221d05ab3629937c *R/recodeVal.R
00b53a54b3379b7a4ea6177ad3a4b757 *R/rowRanksWilc.R
4fcb98365aa8f55b59fa6d96443a0b21 *R/rowWilcoxon.R
527b563d9efbe44b5611078a6cb34a0c *R/sam.R
4f41821f6961cbf0a90c29134aa53364 *R/sam.plot2.R
f3cd207cdfa14afe7659888a32e134cb *R/sam2excel.R
74ae59123f07f85f4574b841ab3cf7f5 *R/sam2html.R
4502c55b605b8faed802cfaf267ab00d *R/samControl.R
94e7a29fa1b11348948a505305d3024b *R/setup.mat.samp.R
7a09d319931a219ed7c7c355f51dac0a *R/siggenes2excel.R
6d28c5ddb43c6a9bf0e1cf6dda1062ff *R/siggenes2html.R
a1cd9ee60c44fbdcb1ab7330290cffe1 *R/stats.cal.R
6119823427ee55168d28fff453dfacb8 *R/sumEBAM-class.R
22e96e49821d5532cef47ba3c7ce64aa *R/sumSAM-class.R
d6fe56bcdbf77088e739d880aa0a9b7c *R/trend.ebam.R
9c3b75cb3bb3b86d824a20d9f77f7700 *R/trend.stat.R
4c08ab13205e8d3ccf7d5ac9d6ebbefc *R/truncZ.R
4c47aac803ccdb271b31203199741c25 *R/wilc.ebam.R
79b35364ec7f3314eccc779b74496ef2 *R/wilc.stat.R
e8c6b008874aa75336b3d0d23b0748f6 *R/z.ebam.R
5800a8c376ab5e9f077a6cf42a2e7a55 *R/z.find.R
8447ba474e4d5b7f05cc9055b850d929 *R/zzz.R
7999eaca02ae7e5e815461622bddf4f1 *build/vignette.rds
064c9fb21503e866bec4b2f7658ac0db *inst/doc/identify.sam.html
5b6b43a34904f3c11546e6c1d3fdcf45 *inst/doc/plot.ebam.html
44072f272bd20db9626061884e4d8d81 *inst/doc/plot.finda0.html
2ea91b069d30b8b56efce497d81f8a5c *inst/doc/plot.sam.html
d53923d2effec29b6a2b8013f220bbb2 *inst/doc/print.ebam.html
f01bd37750075e10ad6757b525a24245 *inst/doc/print.finda0.html
d53756c67ac49fdcd4d3ff09116c665e *inst/doc/print.sam.html
59b73b4bce805b5bda7605e87d0c5c78 *inst/doc/siggenes.R
d8b1f76117da12c81a3c4b2575ddb450 *inst/doc/siggenes.Rnw
25daff8fab11ba9752b0fb9c5947a63e *inst/doc/siggenes.pdf
213d83d61c69ff915f0c29b568984377 *inst/doc/siggenesRnews.pdf
67e1b1b494bfe5bae58d6ce2ebc1c440 *inst/doc/summary.ebam.html
a6dc75ad17efe7238dbe87bcaedf50ea *inst/doc/summary.sam.html
bdd5e6e632537afb41dc7d69e58c84e6 *man/EBAM-class.Rd
5a0df7c0796a96702629a56ee10f43f1 *man/FindA0-class.Rd
6a98ab3f7793b321114a49e13047c2f8 *man/SAM-class.Rd
1c12cf72b36997666d515446cedf723f *man/chisq.ebam.Rd
180d309c601454ffecd7ee97faaffa16 *man/chisq.stat.Rd
eb627ae3206e4fb31b232cba64d5ff87 *man/d.stat.Rd
456225875d27c7bebd6a42a2d8b77596 *man/delta.plot.Rd
c71e71162e3bd404e74f70e66a3998ab *man/denspr.Rd
b736093dd39fa678f0be7aac6dc03d3a *man/ebam.Rd
fec1c71c903a23dfb23c8d6149e4803a *man/ebamControl.Rd
209350d0f0b19e4a64e37e778aa639b1 *man/find.a0.Rd
c172b70352fda613cf2064249bc0d6f3 *man/findDelta.Rd
2c66ca6a8f190a769b0ce674d7f19235 *man/fudge2.Rd
2d678a44ff9d4566ce8af1b86624727f *man/fuzzy.ebam.Rd
893d2e7cf20394685fa6b5f352bfbb19 *man/help.ebam.Rd
0ebee227538ca949727acf18ee9f3498 *man/help.finda0.Rd
34b70db4d4d9f812d237b7677d808d25 *man/help.sam.Rd
5af8f24ab18ee33f3bed80f2a4fd9e65 *man/limma2sam.Rd
31fb72246d30d24324d1266039711455 *man/link.genes.Rd
e565a18859309d7906004e87975d1a07 *man/link.siggenes.Rd
cd6e6dd281b7aae991ee3a54f30e1739 *man/list.siggenes.Rd
e98eec4730d394a3a9d896f0d8ddcefd *man/md.plot.Rd
d6d3114d33593d4ea4e15b83a54fd7b7 *man/nclass.wand.Rd
f9e117080f0797313353c0d721d328cf *man/pi0.est.Rd
87ff022ed9376b2248db6ca761247060 *man/plotArguments.Rd
27fcce0aa4ec8726647e574dd2022744 *man/plotFindArguments.Rd
e86e1829e5ff8ae4ebf64764e92c400a *man/qvalue.cal.Rd
bc9b3978a3d5f1ed4025a44e4d2e435a *man/rowWilcoxon.Rd
de6b6d2bacfac965913b6ad525ca3784 *man/sam.Rd
beb7499019c8ff50d5323ca8df66b67e *man/sam.plot2.Rd
df31e48a0c7f97dfe0aeb7dce7f02b08 *man/samControl.Rd
8a37e018eb0794036810074a06bb94f5 *man/siggenes-internal.Rd
288b787f0ea8e713e27a7a8ade14c056 *man/siggenes2excel.Rd
10158db9490f5987ede9d44e54b39b46 *man/siggenes2html.Rd
611fcc3260e673ab441b448dcc6a8ad0 *man/sumSAM-class.Rd
22f9deba8275fa9c62071ae48311154c *man/trend.ebam.Rd
72e9013ec8681b561a27143e11859e75 *man/trend.stat.Rd
1e6edfd20a8b2b8f0fe9b9083ca99165 *man/wilc.ebam.Rd
ee5888e51dc3c48d0abd013247a54245 *man/wilc.stat.Rd
778ca7a38b58dd0ad731b3207466fca3 *man/z.ebam.Rd
c5d40bc040615bd2a9aef0123bac4e69 *vignettes/ebamplot.eps
c1bf319040084f3dd66b5936ec6c32e0 *vignettes/ebamplot.png
e99b0eff2ba94da3300054b11800ead4 *vignettes/finda0.eps
0d16deeb213f7a85530fd22941ab6126 *vignettes/finda0.png
add80b40b52d541630002d83de1b4492 *vignettes/samplot.png
8531fea551903a151acfecc5b49541ad *vignettes/samplot.ps
d8b1f76117da12c81a3c4b2575ddb450 *vignettes/siggenes.Rnw
