ceed17db060d38a7672f43760f472139 *DESCRIPTION
76b2e63e6ab11257bc0d43f9646ac77c *LICENCE
3681e81cfe787e56927406371bbc7bab *NAMESPACE
c18ec023af73023fab783192915a1b94 *R/calculate_similarity.R
561966dae0a5161826e10214817c9cdc *R/compare_many.R
b45b52caab9d4f54b1d042aeb4800f99 *R/compare_profiles.R
16433612750241519c10346c34913286 *R/create_profile.R
fcc8aa6b7ee1d462c810d78ba4081188 *R/data.R
b03bff26f0ec3a01d6e80fcc46111b27 *R/filter_variants.R
92aeb1c3d55ecb59ea6c013cdabf8666 *R/list_variants.R
8a5257e30317f272f3260670c91794d4 *R/plot_heatmap.R
d2f68faf5b116ff6cc19781fb8f2115a *R/plot_impacts.R
9f2c9956b52eb031a743d04843a41092 *R/plot_variant_list.R
80445e4ac102df26950fb33608c2c3bc *R/read_cosmic.R
b739e553cdeadb7c26435d12487b9d7c *R/read_profile.R
6c6493d90404a2f0fcbde736543e5da1 *R/seqCAT.R
02042df19dda84b6f924f176095d507e *R/write_profile.R
40664abc156107e51c3a4648d51456ac *README.md
05da9fb6b0e4a87827525df673befc18 *build/vignette.rds
70837226d789803184c8f5c7091b1037 *data/test_comparison.rda
7b5ffc97eba810160ebdc2615264ec6d *data/test_profile_1.rda
17ef61fd8199052bc1c7bb43d7775425 *data/test_profile_2.rda
b9b56523826611044d8deb3317d94fe0 *data/test_profile_3.rda
03b2fcff11ec195b1585596551b7faa9 *data/test_similarities.rda
f2b0adcc58d0b65c8e7c729f45245779 *data/test_variant_list.rda
a556829a0293d813e1fc5f121db1eb62 *inst/CITATION
b857d57ea7d673c7ca5ef1d69785652e *inst/NEWS
421a272ab8a98e8b3a05314f22924233 *inst/doc/seqCAT.R
06757fabd15b2cada9e0e2f13c445030 *inst/doc/seqCAT.Rmd
c2e6a78680b1202c060b394e422c17fe *inst/doc/seqCAT.html
4b7dc6882f8057dbb678312672390273 *inst/extdata/example.vcf.gz
d13668d9a7d7f3e588aa2e25b2911126 *inst/extdata/sample1.vcf.gz
2355d662a94a4f4e14cff2051ea918bd *inst/extdata/subset_CosmicCLP_MutantExport.tsv.gz
1dea932a7d5d977271ddf4348e20dbd0 *inst/extdata/subset_CosmicCompleteTargetedScreensMutantExport.tsv.gz
434dc599efb5cf831a9e9d3ac6c5da4b *inst/extdata/test.gvcf.gz
4fd0418a733ef43f22123afc3bc800e0 *inst/extdata/test.unannotated.vcf.gz
572006a57a71d9605f7f65e22bff951d *inst/extdata/test.vcf.gz
ae67bed6a18b437ec7675cd4f7b06059 *inst/extdata/test_1.profile.bed.gz
9868f10cdbc6e0a997ca9483ca597262 *inst/extdata/test_1.profile.gff.gz
7d3e87808b814ecfe19b21c639904b3d *inst/extdata/test_1.profile.gtf.gz
d3bea0240ab32a49ce3e15f8c9c88c96 *inst/extdata/test_1.profile.txt.gz
8984a3f8572e8f46da8d9db65a7ee676 *inst/extdata/test_2.profile.txt.gz
d28b1c86773eeb8e33066e7904db4f93 *inst/extdata/test_3.profile.txt.gz
5b38b1174a76279cfae61a1468c741d8 *man/calculate_similarity.Rd
a86ebd8d855ced296ec753725e2c5670 *man/compare_many.Rd
0efea98d07239b5cd55fb5c4f47c6a4d *man/compare_profiles.Rd
84771d0e9c531c9b10529e1a1abefb61 *man/create_profile.Rd
b75ae123a5109cdbf961ed27f70b9eda *man/create_profiles.Rd
6db377d0aca5a02e2b25ca5aa384302f *man/filter_duplicates.Rd
7d2c77c54b3aee0c5e769b6c0cfe28f5 *man/filter_variants.Rd
4f9eb65092f987e220fa5251a8570225 *man/list_cosmic.Rd
c42001bab364daf436d97c972221ff89 *man/list_variants.Rd
1b642413710411064d4e47c4c12a2b43 *man/plot_heatmap.Rd
83ebc904b5831f16374c28c12cb0a470 *man/plot_impacts.Rd
915173ab5c68bc29803757f057ae7183 *man/plot_variant_list.Rd
009fc9935fb661a29f777ae73370be16 *man/read_cosmic.Rd
5f68e21df097af31da5e1293aaff2142 *man/read_profile.Rd
771d254ddacfdaf047f7068fb2ea2a29 *man/read_profiles.Rd
8d1130a4f2f1b4acdd3eb4c8cf6f7182 *man/seqCAT.Rd
0189e65c6d19932a4c79f70262d2b072 *man/test_comparison.Rd
e65984decb1333a61e636cae1a89e933 *man/test_profile_1.Rd
a708f5dadeed62bba483705c4f55d9ab *man/test_profile_2.Rd
9f16a30b00ffc5e63bcb41607e490540 *man/test_profile_3.Rd
76f33d7350adce262190a23ffc6ba553 *man/test_similarities.Rd
b74e00b449d9c099f141a00188b35c7f *man/test_variant_list.Rd
cd89589a34964f2258d5f1059c304e1d *man/write_profile.Rd
e5b5db807d902d08318ec47d4e6315b1 *man/write_profiles.Rd
716c024b5a2df9398068fe97fc5c5f3f *tests/testthat.R
c32c56b2dcdbc8f81e75296fa344e7fd *tests/testthat/test_01_create_profile.R
74bb8b1cc8503f11518f1a13ac3c4ddb *tests/testthat/test_02_filter_variants.R
1a8dac9a6a8d68387e7362f0f2c7d686 *tests/testthat/test_03_read_profile.R
f4ae7f34d8c17ca52de424daa5154062 *tests/testthat/test_04_compare_profiles.R
c472764d4d2bdb760c9ba665e71224bb *tests/testthat/test_05_calculate_similarity.R
269c7ae2f94a1a1811c2045ec2421d2c *tests/testthat/test_06_compare_many.R
8d585ec451036485d2c8c818adeebbb7 *tests/testthat/test_07_read_cosmic.R
c6051d0a4e8cf14ce33cd289935419c8 *tests/testthat/test_08_list_variants.R
7dd9288c54d96261a61abb9d319b9a07 *tests/testthat/test_09_write_profile.R
ca6da4d31878d01fba14e3452f7c4038 *vignettes/bibliography.bib
06757fabd15b2cada9e0e2f13c445030 *vignettes/seqCAT.Rmd
