3fafb0db3733dce4a7887f89583fc680 *DESCRIPTION
6733bdd10edc46c79767b2683114995d *LICENSE
60ad1820d78e529f825a9c4061e4d8c7 *NAMESPACE
c1da01309e732611774c50824e41b4fa *R/RcppExports.R
0330bf3e8d169f78fe650d9bf3aaaf39 *R/combineComboCounts.R
977989b333df22c645d5cd5e636ac429 *R/countComboBarcodes.R
1dce3993f52ac6a0798aa9fabd0d694a *R/countDualBarcodes.R
d172b900e47753ba5e5a0d53e497f14f *R/countDualBarcodesSingleEnd.R
d3999d9cbca9e8b740e7c362e74a8db4 *R/countPairedComboBarcodes.R
c3bfad8f1c5877eee77d277a6155ab44 *R/countRandomBarcodes.R
0d2b09fe479e63082a1faca83c293fe2 *R/countSingleBarcodes.R
62cbe0a88f7ac842d5641a00651039ad *R/matchBarcodes.R
ebc2a42417e0e4a506ebc4a0aa159289 *R/parseBarcodeTemplate.R
4baa3e0335fa25e8abaa59002205f77a *R/screenCounter-package.R
edc2c15373f6839a597f34f4e9b0657a *README.md
07b8c69fe50e0e39626e2cb4328f6039 *build/vignette.rds
099ccde8901068621efe3f383f16ffe7 *inst/NEWS.Rd
842211dbf5e50fe46ce31cadf648498a *inst/doc/counting.R
ceb1dae7743acf7859a0cf0a22f056bb *inst/doc/counting.Rmd
30774c303dc7ae268735bf646ef2c610 *inst/doc/counting.html
7dd51271587d6e7e5cb6bc842af15979 *inst/include/byteme/ChunkedBufferReader.hpp
b35931e8e3391b378f1190f78c68b389 *inst/include/byteme/GzipFileReader.hpp
faf729c51483c94d70c9c59fa0fc86f6 *inst/include/byteme/GzipFileWriter.hpp
3b6c07f3fafbdd3b50077af0774d8c1b *inst/include/byteme/IstreamReader.hpp
fa3dd3076ccc9ad108c1123f2d8e3525 *inst/include/byteme/OstreamWriter.hpp
38cd1ed35d97173fa9eea68e6315f835 *inst/include/byteme/PerByte.hpp
2e81b89fbb5e30e76796e45e8d2194d9 *inst/include/byteme/RawBufferReader.hpp
b94a75926d96b429de6099e885516797 *inst/include/byteme/RawBufferWriter.hpp
5b5918d009e81c4d2e8ef576f239aada *inst/include/byteme/RawFileReader.hpp
2af9ea3a43553d788311e513a1d61872 *inst/include/byteme/RawFileWriter.hpp
81489b3524d71af06af86fc1ee50850d *inst/include/byteme/Reader.hpp
f82b2c995515ca2ece756465c9fc6ea7 *inst/include/byteme/SelfClosingFILE.hpp
ac6f929ca960740d528409bb244d686f *inst/include/byteme/SelfClosingGzFile.hpp
41327f9af3c001e6f7747b9f81464edf *inst/include/byteme/SomeBufferReader.hpp
9f47bb3e80cf902be8490976a091ca62 *inst/include/byteme/SomeFileReader.hpp
5c9373599053827209c64bf82b1eb1c9 *inst/include/byteme/Writer.hpp
a4bb7f5846dd5a9276b4affb32d58bc1 *inst/include/byteme/ZlibBufferReader.hpp
b03256b46f00408901e505c9ca70e528 *inst/include/byteme/ZlibBufferWriter.hpp
80c422566134601e2aaf4974cf451419 *inst/include/byteme/byteme.hpp
78775999ce656aae7806dff74d8b939a *inst/include/byteme/magic_numbers.hpp
8e2b2816408a25606880d968dd90e649 *inst/include/byteme/temp_file_path.hpp
4c2bf57169567565351e3ccf3edb4764 *inst/include/kaori/BarcodePool.hpp
321a49522a7b914fec61747d07fb640d *inst/include/kaori/BarcodeSearch.hpp
d041b047cb40b4d85deacca3ec588f71 *inst/include/kaori/FastqReader.hpp
5eba5b108d1a30a6b4337e87bf549750 *inst/include/kaori/MismatchTrie.hpp
7c1a8a0b61abab09f46e6602e9c33157 *inst/include/kaori/ScanTemplate.hpp
7e7e6251a70c334a9b406910d3e79ee4 *inst/include/kaori/SimpleSingleMatch.hpp
fd4921a5731a37ba162d016b0b7d156b *inst/include/kaori/handlers/CombinatorialBarcodesPairedEnd.hpp
cd1ad7fe8fd0698ee9b01bc2c9d8656e *inst/include/kaori/handlers/CombinatorialBarcodesSingleEnd.hpp
93a66213272403ebde01d2118847f987 *inst/include/kaori/handlers/DualBarcodesPairedEnd.hpp
9dff0ad0f10cf71eee6db7b849f548e4 *inst/include/kaori/handlers/DualBarcodesPairedEndWithDiagnostics.hpp
00ca6613156328a5217d0839a2a2155a *inst/include/kaori/handlers/DualBarcodesSingleEnd.hpp
7f1233ae752ca716a38acffdd25899ea *inst/include/kaori/handlers/DualBarcodesSingleEndWithDiagnostics.hpp
11244326bd78395747a4e4dfc896793f *inst/include/kaori/handlers/RandomBarcodeSingleEnd.hpp
0fec5d7490c39f28a5fa1c28b58c2813 *inst/include/kaori/handlers/SingleBarcodePairedEnd.hpp
c9a17a05c0cf78c3d07f0b2270ad1892 *inst/include/kaori/handlers/SingleBarcodeSingleEnd.hpp
226b032bc0a634ec4def0868177bcfdb *inst/include/kaori/kaori.hpp
dfddd4d27d7b9c8ab74997f1559db2ff *inst/include/kaori/process_data.hpp
332d321ca8013c84bb4e9ba11ee2a4ca *inst/include/kaori/utils.hpp
9fb2126d24977eda55f3c4aac487bb86 *inst/include/transplant.sh
781960edc54a1cd9af7c289083b34dd9 *man/combineComboCounts.Rd
3317ae6731eaa336fae9e1050965b0c4 *man/countComboBarcodes.Rd
11ed8fbe412a9de2b7ca94c3b71825f9 *man/countDualBarcodes.Rd
d8ff29394a9e0dd76432c73c387cb260 *man/countDualBarcodesSingleEnd.Rd
cc1f881d176d05db9570e45b83efd863 *man/countPairedComboBarcodes.Rd
9823ea06ec3abde63a926b191569514f *man/countRandomBarcodes.Rd
c9be708d55a9d3f24d95065e44408601 *man/countSingleBarcodes.Rd
c17751029dafbe1be9cc76010c713fcd *man/matchBarcodes.Rd
83957f654ab4e6159532bd72a5de3092 *man/parseBarcodeTemplate.Rd
c95945aea4e252cd4f23085e10720e26 *man/screenCounter-package.Rd
5711900cc1ebd413b5fbf59cdb633427 *src/Makevars
e672ce4aae8088a78ab99186121162c3 *src/RcppExports.cpp
85ee90c1d80f4f4f825ab04baeef1aa8 *src/count_combo_barcodes_paired.cpp
4862115266aced49c9773a7b2a4bbb33 *src/count_combo_barcodes_single.cpp
260f29a8c4ebab19347f898fe16873ee *src/count_dual_barcodes.cpp
ca14d1c49c5ac21d4077fd4c10b0401f *src/count_dual_barcodes_single_end.cpp
5644dd839bdd8c99d039da3e7957a36d *src/count_random_barcodes.cpp
3fcdc341a396a41362ae95b2dcd9ab82 *src/count_single_barcodes.cpp
558ac7e3872829ce452fbf2b6f0ee968 *src/match_barcodes.cpp
e4c1d893f84277e35356ef9017cec351 *src/utils.cpp
444f3ce9940d028741b20ca69ff0ebf1 *src/utils.h
519a7524b5f9200bfaf0a43bc0b1d5f7 *tests/testthat.R
349110a270213ccec71148dde1fb0ec1 *tests/testthat/setup.R
d857852eb8b35942c7f90ca95237a658 *tests/testthat/test-combo-combine.R
db87611ae8dcc1c93fbb48de6d08bfa1 *tests/testthat/test-combo-paired.R
56450f3d963a7d9bf1a14cc69bf85ec0 *tests/testthat/test-combo-single.R
ca76d73e10d7ed994f3d61af6823cd4b *tests/testthat/test-countDualBarcodesSingleEnd.R
7e22b83180cff2eb26ecda91958c3004 *tests/testthat/test-dual.R
d180e29079c4d97b79b3871e92e1aa28 *tests/testthat/test-matchBarcodes.R
eb7d50d4e07fcd7ee489695b1594a826 *tests/testthat/test-random.R
c9ceca5a6de54b41f135bda5871a0c4d *tests/testthat/test-single.R
ceb1dae7743acf7859a0cf0a22f056bb *vignettes/counting.Rmd
