9518b1f5bdf22c456e24f0135ef47b0e *DESCRIPTION
624a806bc097763cbaa8b26f09fd7d34 *NAMESPACE
b3e2884fcfca8f2a913c7fb3fd5b130a *NEWS
7d434246ce02edf82c39b21abc53ad29 *R/aaGamma.R
04a553e1c8e8b301d4c689ab958ac620 *R/aaGauss.R
402b3e092ad977d79c7e6ef1f84b4ac1 *R/alignsim.R
9757af178014c9171f56c6dfa16fb448 *R/aminoSC-class.R
8436523bab5e3e23e87682f3506b9964 *R/biTree.R
53a7ff20d994836e053d78a9a9cbaeb8 *R/codonCoeffs.R
5da549e96dbb2049b17fe145482ace16 *R/codonFreq.R
d519f54098e7ba8c16e3a1bc9f0556f6 *R/codonvalues-class.R
d7469eb34db302d14ce3f1aece851880 *R/discrete-class.R
9c7b609db93600c354dd544a8522fe0d *R/discreteInput.R
15694553274d5372576844f87dd7f50f *R/dndsCalculator.R
ea49ad380db17b254a0453bb8250e935 *R/fixMatrix.R
9b6dc5c78dcd8f1d63e04e146c8dc3ee *R/hbInput.R
30b67b4ed4b1942e14ab2c5ea813960f *R/hbParameters-class.R
b21c2d0dea741441d9d59e5555722afb *R/omega-class.R
69d90cd21bee1f9864e956bca7bf6d41 *R/ou-class.R
31325e6be86cffea5b5d2ee213f20d0f *R/ouEvolve.R
c8b8f6c008712c621b1ee5030a7e211c *R/ouInput.R
b1143cc6c188922d9de7eccb2a930e2d *R/scoup-class.R
1ede35b4a4582775621876d60673f54c *R/seqDetails.R
ce0e33a0bb59ff7235fed886aee4fba7 *R/seqParameters-class.R
aefda4db09bf759d31c9e18ccb840ca1 *R/seqWriter.R
5dff26a6a9d1995cf96046dc28b0d692 *R/subsMatrix.R
2a9bee27c3922bed4451d6513a08c898 *R/wInput.R
5355bead59617e6598c6406f3fa682e4 *README.md
184e9e7b501a08adfb20b3c8296c0a01 *build/vignette.rds
c6b90509583e71f4cd9bef1157d3218b *inst/CITATION
d959fea83cd1c3d2ae3678d06002a691 *inst/doc/scoup.R
3fe54b6d60212cb8e637e4191db24190 *inst/doc/scoup.Rmd
1ec27079cd518c724bf50c024ff872ec *inst/doc/scoup.html
ab0aacc72cae8b29804cbc799b2e792d *man/aaGamma.Rd
7abe6995836554283542e324cf79b294 *man/aaGauss.Rd
0c559ce5fd76245e7dd25a297bc5b198 *man/alignsim.Rd
ca33f3e9eb7902324e349cc7f8c14c4b *man/aminoSC-class.Rd
a37ec2b6921fa4fbca0a69bc66cf07c7 *man/biTree.Rd
8d45ccc7552b92bf95f5445760b5f0b6 *man/codonCoeffs.Rd
d52a371949859195e1811642a6e7e512 *man/codonFreq.Rd
48cf23b117334f85ecd22324a542a6d5 *man/codonvalues-class.Rd
c72fe784ff02a348cad95fc97faea7dc *man/discrete-class.Rd
0ab8a24938fe6853edcd0cd6db241d2b *man/discreteInput.Rd
4369945f8e3685e6ff4569d023afeb5c *man/dndsCalculator.Rd
6876f679b8ad404d8119893038e29588 *man/fixMatrix.Rd
02f3139cee7b5acc0daa33aa10814f66 *man/hbInput.Rd
8f2dcb5e2a8b7200d57481b8a68b3208 *man/hbParameters-class.Rd
bc0893c37273cd2f7a98210f71099207 *man/omega-class.Rd
7205e9c1c456071dbc3ddc04ed194968 *man/ou-class.Rd
a82a3414cd4995cf48854988d4b9e1fb *man/ouEvolve.Rd
30e9669d2837850b4b36a25a19840aa8 *man/ouInput.Rd
c0ecf9f8cc6a9e56c79af096f30a27d4 *man/scoup-class.Rd
b2ff553c8a6ca47204464c9a7b639dd9 *man/scoup.Rd
00ee2b35c1002b3abc3cee1149169717 *man/seqDetails.Rd
5ed510339694bd1731e3685c9cf46b2e *man/seqParameters-class.Rd
f193c47477fffe526e3acefc7e5be23a *man/seqWriter.Rd
075f40f42f969d075daf82d63182ae4e *man/subsMatrix.Rd
3c4fec40d4527a7801f1991c552edbd8 *man/wInput.Rd
cc57a28efd0fb23efe1476173f2f1e91 *tests/branchWise.R
ba0fbb8a2603a43eaf8fa3f9e42fd35e *tests/ouSensitivity.R
8c8cea87e0d79964581a9bc54f50aad3 *tests/sensitiveVnVs.R
3ddc24ad67913af1e1b926c504b9bbc7 *tests/siteWise.R
cfa2f685e94f1f3a6efb5ba09ce8f463 *tests/testthat.R
5002c3d0ab769ea2694735fd58eb9de5 *tests/testthat/test-aaGamma.R
077cd73d31945bb758f4683d48d8fa09 *tests/testthat/test-aaGauss.R
969d82bd88d3357abec9d7dc86d70fa6 *tests/testthat/test-alignsim.R
c8c5b3be8d820581a63150adef779543 *tests/testthat/test-biTree.R
bd7dee1b719c9ab62ded62be3dc6ce3a *tests/testthat/test-discreteInput.R
073bfba0727d0f014730c020030e2978 *tests/testthat/test-hbInput.R
a50cb6c73797e3310eab47478b975ae5 *tests/testthat/test-ouInput.R
60ed8ee49e2b12c74d5fb3a9484899b6 *tests/testthat/test-wInput.R
4ac0bee19b2f5db5cb3edbc4791dba20 *vignettes/citation.bib
3fe54b6d60212cb8e637e4191db24190 *vignettes/scoup.Rmd
