6a4cb0cdac80650941b603d142cd52cb *DESCRIPTION
1e742528981b1f04cbf8cdabd67df088 *NAMESPACE
bb75ba6f7a268c7d56ebb6e42c4057c1 *R/AllClasses.R
68235f44a6721efebb8cc0deda118054 *R/AllGenerics.R
7ae0622425390083ec3e5bddcd353a13 *R/SCONE_DEFAULTS.R
66aeaf9f0c3a738e9e2c2d2bc449d72d *R/biplot.R
4b1d6362f534f7d9b7fc78ff3ccc832f *R/biplot_interactive.R
5b040d11dcd50ff0cf29d7ffdc3817af *R/data.R
c3aec7bbb10ea110aefbc21cd9714288 *R/get_design.R
0a6a9df55d05a021195b4c718279d913 *R/get_normalized.R
12f4b7e6d1b2a8162ae516f716ce9d2e *R/helper.R
484767fe815077c1e4928753d363c8a9 *R/pareto_norm.R
eec6f8f49a64b71a980bd1f3edce159a *R/sample_filtering.R
8f3f3dcd5c37c43c0693e70ee30b8754 *R/sconeReport.R
f45d0015d0806a6ae38a69d2b042d9b9 *R/scone_eval.R
d26bfd8ea979dd279b32b613ea758444 *R/scone_main.R
0a8b97e12297d95299e46afde193599c *R/scone_wrap.R
3d7aa5375c135b51977b11025fbb46aa *R/select_methods.R
ec3a69e361924852ecdba4d44f1cfca5 *R/ziber.R
635f142c941e610f644d8bab207da2ea *build/vignette.rds
aa1ac9329c289943810dc6a288e3a5cc *data/cellcycle_genes.rda
0d70209b0400822039328d2050b220da *data/cortical_markers.rda
a570ce5085c0e3ae428847b229375c93 *data/housekeeping.rda
d6ce24d3a01e30cd845793b8c071b6a0 *data/housekeeping_revised.rda
2d40b658a3ca3e0050fd730d88e654f6 *inst/NEWS
1c3f5c6f37d5ba5b7cfef1cdc3e47b90 *inst/doc/PsiNorm.R
7db350c75224dc3b2a0f4f89a78f714a *inst/doc/PsiNorm.Rmd
00911abb580abed6d46d01ad9fd17a49 *inst/doc/PsiNorm.html
e9617f9e692037e4dc9766510007282f *inst/doc/sconeTutorial.R
f8260415030a804f0aa492026eef6a0a *inst/doc/sconeTutorial.Rmd
aa2af68c8938e2aea83d4c8b7122906f *inst/doc/sconeTutorial.html
7e33f2d7c2c71a22aa0154e5a8230832 *man/CLR_FN.Rd
2e56c2a937ad645c4d8924aeeeeb0a43 *man/DESEQ_FN.Rd
1dbb15db722b0861e34fb15cdeb03464 *man/FQ_FN.Rd
532433e0f58dc482ee320dddcd93ff7d *man/PSINORM_FN.Rd
f459083197650651c52a944f35f88b20 *man/PsiNorm.Rd
7d642a8ce1e3e0b9b65a1137e9788f17 *man/SCRAN_FN.Rd
0accbb54ba9d74c1bfa6225e531bb9dc *man/SUM_FN.Rd
08d90ccdbe529ae2a8c6eb7fbd87616e *man/SconeExperiment-class.Rd
79b1ad52942cf6f048f08247000488a3 *man/TMM_FN.Rd
4fd03681dd09c6b1dece433df4be9878 *man/UQ_FN.Rd
76f67527e1873b8fba162615db627064 *man/biplot_color.Rd
9efcc324665e0b8d7deb9aac622e2182 *man/biplot_interactive.Rd
07229b020297d717027d9de090a07860 *man/control_genes.Rd
5f5aa6335acaee1ac589bc90d47b7c86 *man/dot-likfn.Rd
0afbdebd369ba6f27fc90bef6af1a120 *man/dot-parse_row.Rd
81be78370a6b5980addd6e7d406dc409 *man/dot-pzfn.Rd
09710e3e67eeb73f40fbf3c0e02f8bbc *man/estimate_ziber.Rd
1fabad941aaeae4859e1b85320753959 *man/factor_sample_filter.Rd
f95058ff82df46ed04b0f5d532bd621b *man/fast_estimate_ziber.Rd
12c096aeb2c03b601a10a7b5cb5ef47a *man/get_bio.Rd
1433909f87d12973893d14c45b128a5c *man/get_design.Rd
4fc2c91c8aaed5b756c906a4525e8c3b *man/get_negconruv.Rd
6969b743b08dbe5e84878e80c4beac17 *man/get_normalized.Rd
9c27f9b6bad77735a890e05a5229564e *man/get_params.Rd
23b0454438d992a8ec4c54f4d30910e5 *man/get_qc.Rd
d803bb6dab223cc89344977bd76f0f42 *man/get_scores.Rd
498d8703bee08f1bc099c6a664209fff *man/impute_expectation.Rd
0ae1554fce4c1f425957d24cadf6e8ab *man/impute_null.Rd
81743220c55d4fe9540dc60f3bbee331 *man/lm_adjust.Rd
f57ef6f63f5c1b767b9fea1fb0122d7e *man/make_design.Rd
35529ab54ba3239f4a77d6f0992ae4ff *man/metric_sample_filter.Rd
f902fc09b7f4c5ae8aa9a5275176666a *man/scone.Rd
d89462c475d872ce929ba65d7b7edefd *man/sconeReport.Rd
c32b286e38a253325242c53a6b985d51 *man/scone_easybake.Rd
6f24bfd72c43386f978f475d9cd75d36 *man/score_matrix.Rd
c87f5834fed5886cff35f2863bb2f860 *man/select_methods.Rd
7cac7f7ed3326b94357cc0b90489f148 *man/simple_FNR_params.Rd
fb271c8a7b77db896c50b3a23a1e1b91 *tests/testthat.R
ae2a69b981f140bf7e8141a689b68a74 *tests/testthat/test-pareto_norm.R
f767bc08b0008604b5b2c8f8cb317807 *tests/testthat/test_bpparam.R
03ef9c887adf28f8d0a14602df9ecd82 *tests/testthat/test_get_design.R
6495dfa69a000b61f633c293a1019f37 *tests/testthat/test_get_norm.R
45c1f0a1a95a9227daef07c05529483a *tests/testthat/test_hdf5.R
df94520f66187ab96927492dc737493c *tests/testthat/test_norm.R
1f43187a2ae0c518df7aaa0c7f0a205d *tests/testthat/test_s4.R
fb05a5ee2231d0541848ca953c137bb8 *tests/testthat/test_scone.R
bde6b2c0a866378548fef2832dd9463a *tests/testthat/test_select_methods.R
7db350c75224dc3b2a0f4f89a78f714a *vignettes/PsiNorm.Rmd
9214313d0a820cea6298a72cd0a9c8c6 *vignettes/bibFile.bib
f8260415030a804f0aa492026eef6a0a *vignettes/sconeTutorial.Rmd
