f4458c84f723d864a9b426627e02af65 *DESCRIPTION
4fe869ee987a340198fb0d54c55c47f1 *LICENSE
a333624fb2a971b5462dfd2a8c181673 *NAMESPACE
7be29b5fdcca822c50c04407959a4549 *NEWS.md
a7a6df70bc83605b3aa0ffe9b11699f7 *R/allocateCells.R
38fed9863be6657310d82acd8e055c07 *R/cellsInRegion.R
8bbf13e5163d9b21e8db48b2d53ea157 *R/computeDensity.R
274d997f2bf89ee21ddc14567b08a25d *R/computeDensityHex.R
4218895c38087e9b9286dcc48594aba5 *R/contour2sf.R
7667cf3dad19e2d67c774d7b899b0b98 *R/corDensity.R
8efe6f199e28a4fdc1c7b4d3bf88aabe *R/findNbrsGrid.R
319de8d8e73d80d5b1a9a36aa847ec80 *R/findNbrsSNN.R
0d00bce7fa8bf151dd0b85016d384cf2 *R/findNbrsSpatial.R
36279b4fad509f35cda9aee45cbcc0a9 *R/findROI.R
8f8b1431e72c57e9b2ef9339d83604d2 *R/getClusters.R
1f11cf235a2054cc5ef55aa7a2bffca1 *R/getContour.R
c9c639b667a8e1ac05ce84955b8baf4a *R/getContourRegions.R
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738fa13f833f6580d4c00c6ac6a3fb39 *R/grid2sf.R
1f732150d0df4c0822caa9da0f6b3070 *R/gridDensity.R
8ea99f85662d5f12da5968e05642708a *R/gridSPE.R
2c8550e0219b6c40e6d7faf87f640b78 *R/mergeROI.R
cbffea66f431a7b8cb92f8f575c9f1a0 *R/moran.R
423f76f7d1561d2e0428914c2caea635 *R/normalizeAssay.R
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4d1318f7d6469cbae70ca38f340f8764 *R/plotContourRegion.R
d1cb58e1d4107b2d97e35a312ae7d00a *R/plotCorHeatmap.R
5a18f23af67a9f5fb3e7944d876cbe6e *R/plotDR.R
f10523411bbda67acb91479373493aa9 *R/plotDensCor.R
69c73441c5829f380fc0cd82546887a2 *R/plotDensity.R
4f0b6c947367743563925bb023e877be *R/plotGrid.R
fd1feeac21f0c9ab0cc371b8d008243c *R/plotImage.R
904731e62db1c48e8a42f60b10af0128 *R/plotLISA.R
e23a30973342e7ea0288f9dde2553b04 *R/plotROI.R
dd2af3476ce9ac6e997605efddbc7c62 *R/plotSpatial.R
9618db9a02134a63c967939e96c48cf0 *R/postSelRegion.R
189e1b74f3246d55ffa4a370ca303be8 *R/realignVisium.R
192aa49ea65adc4ad6f6f0d1cfd2c432 *R/removeROI.R
3c8976a9c8075958f73dc3d2032db533 *R/runPCA.R
fb059e323768c346241cc58b7c81f24f *R/runUMAP.R
58ce9f544ed837e2825a17bac5acb163 *R/scider-package.R
946d7051d476e883317c794b44885ff0 *R/selectRegion.R
8a0ef7b805eebade04f0ed9b196fd1e0 *R/spe2PB.R
57f1c45ca241ef9cf4ff5098f4f28bef *R/subset.R
b402234afcf63208bd16e3ad1472c6f6 *R/utils.R
13c728169e765d2da6680160cf988e28 *README.md
673738aff67452c72e847cfdfd79a17b *build/vignette.rds
efa0eb53a143ca8958901942165654c2 *data/xenium_bc_spe.rda
2c7690f7df4d1c79c4e2cdf5743095a0 *inst/doc/scider_userGuide.R
84522a84ac930c2f2f71585938c4a774 *inst/doc/scider_userGuide.Rmd
d2e20fc7ee03fe18449250e69adf1191 *inst/doc/scider_userGuide.html
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08d6947b15ebeb9a0f482a980515931d *man/computeDensity.Rd
296aec04144752e01ddf7ee1dccb81e7 *man/computeDensityHex.Rd
8ee77c83079524dcc46bb202fa60428d *man/contour2sf.Rd
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555d0981674c97d1fba1de3151686d29 *man/figures/scider_sticker.png
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4e23f05b79b2f64d96e33b134801b288 *man/findNbrsSpatial.Rd
70e912ff1b4b63bcd94691f480fe2065 *man/findROI.Rd
c85763ef0e37cb2a2e6d5a834b54606d *man/getClusters.Rd
a7228292443f4e74a95424b6451edffc *man/getContour.Rd
3ebc59dd7404c08673918bacf338b970 *man/getContourRegions.Rd
03db8b2427985dfd59c81d4b6ae5e3db *man/getNiche.Rd
029539eb031f68fe79c243e5f14cd1b0 *man/globalMoran.Rd
6d5f4e69d7a7ab2df788bdd6008ded72 *man/grid2df.Rd
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8ab11dd90f50f36cfffbf45451128e7a *man/gridDensity.Rd
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03864cc653498e789fe2779d4d5a0d9b *man/mergeROI.Rd
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9ce9fd8cd807076d9ec6a2ef1c1d58a2 *man/plotCellCompo.Rd
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8c409bb4e21d44f3845895404d3f814e *man/plotContourRegion.Rd
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604e34de00d3f6e487a840395df9ed51 *man/plotDR.Rd
03026106aaea46b076f0c1e9d2401f38 *man/plotDensCor.Rd
2e4d89d56186629287acad84fcb8b2b6 *man/plotDensity.Rd
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423df11a4b79d3abfb8270aa8c0806fa *man/plotImage.Rd
acb84334410108d317a13d9c6655a0a7 *man/plotLISA.Rd
763d9c73b9b9a5e88b784e9e9c845fa8 *man/plotROI.Rd
4416bf36fafebf44fe3cfebe165b1c18 *man/plotSpatial.Rd
937965b83b294b0a0327246a7f0487b0 *man/postSelRegion.Rd
3bc39f2efaac678897bbe3da62fcd98e *man/realignVisium.Rd
a022da201a6368d21927d94b6806b7c2 *man/realignVisiumHD.Rd
e638ab5e5c97506053c237d163c3d7cc *man/runPCA.Rd
242447ed14c48025190c25d708cf8ed7 *man/runUMAP.Rd
c2112398589011c6e33299112e372468 *man/scider-package.Rd
1cbe37bbda4540927d73dbad47a120be *man/selectRegion.Rd
23fc47610b35f3f19e84bcf6682f59a3 *man/spe2PB.Rd
ca1daa23b12030528b6b95e955a58733 *man/sub-SpatialExperiment-ANY-ANY-ANY-method.Rd
de468931d8bb686420d9602538f62993 *man/update_bound.Rd
4bfe20577f868366b3b748c02f812af1 *man/xenium_bc_spe.Rd
72bc65f23315b831ab08358addb323b4 *src/C_findSNN.cpp
f17df5f8e34a2127457cef61f53803c3 *src/C_globalMoran.cpp
20179666aeb486302bd3da3f664bd554 *src/C_localMoran.cpp
98b4a8d7c39a70efbe246e6e0f91d038 *src/init.C
b45c4da208c058155427f308fa719e3b *src/utils.cpp
1968e97caa240549c94c0cbf1f671a4d *src/utils.h
f474307f9103941edadb47fca40b81fa *tests/testthat.R
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852bc0de7151af9b5392822986bd963b *tests/testthat/test-corDensity.R
c7a7703b8ae1b8c1893dc4a6bfbfc064 *tests/testthat/test-findROI.R
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a04e52797b24eae6a6afeda3f2109076 *tests/testthat/test-plotROI.R
2326604c3c90476db8c574f355b00ec9 *tests/testthat/test-plotSpatial.R
10f587b507bda187449f63e1e3e1caa7 *tests/testthat/test-postSelRegion.R
3ba1bca2aad092ab37617ec2024848f5 *tests/testthat/test-selectRegion.R
09b9446872a86577a2ef3dcdd77b7416 *tests/testthat/test-spe2PB.R
84522a84ac930c2f2f71585938c4a774 *vignettes/scider_userGuide.Rmd
