e2821a15fed28cf0af82107ba6b9030b *DESCRIPTION
cf25f2c3b4f29ee100ab2512eb6153ba *NAMESPACE
e78e368f4a68f1f7cbbdd01f561b5a04 *NEWS
f1d6e23a9fa88b14d37974c1a48c1baf *R/annotateAmplicons.R
0bdf37ccffc06a45fe7d65412e9980eb *R/annotateVariants.R
38c547f0e4146683ea63125b87abd1d3 *R/app_server.R
b6f74b46f4406bdaf70e5dd1c1974108 *R/app_ui.R
43b9bc844d8aefa435ccf7cbe717954a *R/clusterVariantSelection.R
c117cd8d21e0758f666899132f6484c0 *R/filterVariants.R
a469a61b8d2515d4d50f703f5f9dd3e4 *R/globals.R
b03daaea5903d5334fbe90741d022ea4 *R/h5ToSce.R
c50f8a255603a76f5f38386a09b94ca7 *R/interface_explore_selection.R
e486d655c436076ca4f2412df05bed5b *R/interface_explore_variants.R
7030a3b5de056966ab57208e4f84017c *R/interface_panel.R
c404e406abf9e198ada15acc818b4edf *R/interface_sequencing.R
ba8bd88a347daba1aab0d442b52c61b4 *R/interface_upload.R
8462d9d0abe90af329441f204523fc20 *R/interface_variant_filtering.R
35ce53ba5b9c1783685c170e5e6dbabd *R/interface_variant_processing.R
2105edfb8e30bf4dfbcffb8f5897b1d2 *R/launchScafariShiny.R
b1abb7b3a93f0140fa5039ed5f76601e *R/logLogPlot.R
217238d85444a5ab1d6589f41179b9d8 *R/normalizeReadCounts.R
32137e26e320b98a97e3202946546867 *R/oberservers_explore.R
339ad7da30791ef5806dac20d0a4999b *R/plotAmpliconDistribution.R
09c94964aa11d5e2087617765ed25846 *R/plotClusterGenotype.R
c0a4a8e658412ff017727fe202faba5b *R/plotClusterVAF.R
11bc5c3ff4df8340111870ee2af5d10c *R/plotClusterVAFMap.R
ac2183857fdc0a087675cdead3add00f *R/plotDensityEdge.R
1a686333220e4118585a6de7c0f69feb *R/plotElbow.R
a7def4a3abfcc79d6cb0f8da0c79187a *R/plotGenoqualityPerGenotype.R
19e603cb181fdc44892252b1d3424e34 *R/plotNormalizedReadCounts.R
74b01b877f121f70c34d4ce7db4a318a *R/plotPanelUniformity.R
4cc715c128cf27e8f925a6c08141011a *R/plotVariantHeatmap.R
bd4e5568f38cf740df4b10576f5ba84e *R/scafari.R
c3fef27104388d87cb5a40ded75b3473 *R/utils.R
528d7464bd79039c276a8a91bcafdf4f *README.md
d3587b5bd494cf05e50ac010897d9602 *build/vignette.rds
dd27f66634ffedad5bf608822c2c24c6 *inst/doc/scafari_vignette.R
9a74ced52813adeb5f3ef037ac251ab3 *inst/doc/scafari_vignette.Rmd
6cf2e2b2b8c197c138713174fc6862e6 *inst/doc/scafari_vignette.html
e8b38dbdb1476ede2318ca612470144b *inst/extdata/UCSC_hg19_knownCanonical_mock.txt
a1ee6df454d3601c3efe77e8290b8e48 *inst/extdata/annotated.rds
81c070591c01d7a7b60cb3ae46f56a84 *inst/extdata/clusterplot.rds
4baa5682aceb0e37015804a0c0b93692 *inst/extdata/demo.h5
52c86bbaea4142c66a55103c37fdae6c *inst/extdata/sce_filtered_demo.rds
7c785b78f153857266df306d3060571a *inst/extdata/sce_norm_demo.rds
6d63eb6b79eb6d223de160437819830b *inst/scripts/data.R
798809f407236117bef0ae1d9c1c3c03 *man/annotateAmplicons.Rd
414484f63f045d3a13dd04ef0473a7a9 *man/annotateVariants.Rd
686f18eed91770637d498740b21a969a *man/checkH5.Rd
48579c1a335f157a0ac412de2db42883 *man/check_MBAPI.Rd
dd7a8076011d9f85f36add66e5a24dcf *man/clusterVariantSelection.Rd
c4575e574851642be3ee86e5588dffda *man/filterVariants.Rd
cff3bb7f95802f8bbb9592e33ba8d148 *man/gg_color_hue.Rd
8363c5a6e5fa2567b05f35a7e2c6f3eb *man/h5ToSce.Rd
c81a5d0109e9d5c0b913356cae612fb9 *man/launchScafariShiny.Rd
050eb9cf38326897548ae81d9c804224 *man/logLogPlot.Rd
edfd887a36231fca1a08b6d57ba5d4a3 *man/normalizeReadCounts.Rd
8e7be39f98403b6abbe15852d2afdaf3 *man/plotAmpliconDistribution.Rd
45f5de35425e02d296e2f44d9e1ac459 *man/plotClusterGenotype.Rd
63e2ac40ace950dd3a95f1d5fbb16876 *man/plotClusterVAF.Rd
72d66bf054a3a2e500203cbe14658662 *man/plotClusterVAFMap.Rd
63d1b56f780d554a68c254491999420d *man/plotElbow.Rd
44a4a82ef1f2362818b32baaaabc1649 *man/plotGenotypequalityPerGenotype.Rd
09bde4c206910fb6dbb2746495212c47 *man/plotNormalizedReadCounts.Rd
223819c1bc54667bc972704c76152033 *man/plotPanelUniformity.Rd
fb77c89f263d4f387bdeed1edc41e6df *man/plotVariantHeatmap.Rd
5f7b0240d476123fd45b885b10969fe9 *man/scafari.Rd
ecc7ad1c3cf5dc3ffc31c42da453abf4 *man/theme_default.Rd
ef2aee7c92a30bd53ee69092e39b242f *man/theme_shiny.Rd
98f87a3b1e031f616cfa1fb6136bb555 *tests/testthat.R
2788a0bdc2d61e65ddca43c78216e0cc *tests/testthat/test-testing.R
9a74ced52813adeb5f3ef037ac251ab3 *vignettes/scafari_vignette.Rmd
