17f704d8e2f61ff64646fe7c1b43e9ef *DESCRIPTION
8599789c524ebebb32c7aca89ccc3963 *LICENSE
6791d008167aef38567e5eb97359f4b0 *NAMESPACE
d3f1c92597fbf64b193ccc62b847c5d4 *NEWS.md
efd3eb10d2a06a86662a67253cc58e36 *R/CPM_normalize-normalizeGene.R
52db54b3d568f16341fc53b54354a3f4 *R/DESeq_normalize-normalizeGene.R
429f89c8d747123198c1fe2772d2584f *R/TPM_normalize-normalizeGene.R
d2e2c54365530dadd7a8242d89a0398a *R/adjust_pvalues.R
55ad4c7337c1939734bcff815867e287 *R/buildZINB-callQTL.R
460103810a5e876eed93361ed7972180 *R/callQTL.R
f3e333817e18d55d2ca6f951cf6774d0 *R/checkSNPList-callQTL.R
320927709a2b7672af3c6d5f0056d85d *R/createGeneLoc-callQTL.R
144af3c6041a69bb6fdd67d61c231d67 *R/createQTLObject.R
0e7d575dd87038e9e65a4615a0ce62bb *R/createSNPsLoc-callQTL.R
316716a96f1e998f5acf077f46a4fa80 *R/data.R
6586db2a90de3091abe6473144b31920 *R/draw_QTLplot-visualizeQTL.R
b32f6df8f041a07234cc6a8f989c6564 *R/draw_boxplot-visualizeQTL.R
51b0e2eb0e45b7cb70f95d940b5d6241 *R/draw_histplot-visualizeQTL.R
9dcce0fa9cdaa08879fd467631c691ba *R/draw_violinplot-visualizeQTL.R
9707e7d03505fe20e528f75f13f662db *R/filterGeneSNP.R
4783ed26c94fb347d83941d4d61ebfb9 *R/filter_by_abs_b.R
742364a3248e3710610584998ea97066 *R/generics.R
5b1aff1aa23f021c81710e766206f378 *R/get_data_by_id-utils.R
18d3e92c3761d11f7f9a200b46ecbaec *R/initialize_progress_bar.R
e872e3910bb9de005ed60e37e6da1bec *R/limma_normalize-normalizeGene.R
fb63019649af8f1e5226fa0ad3f80a3a *R/linearModel-utils.R
6054b055ac206e28970918c5cf5a5567 *R/log_normalize-normalizeGene.R
15abbaa6039476f386461a062fb2498d *R/normalizeGene.R
7d01dc0a8d9885dd344b2ad4899af92e *R/plots_theme_opts.R
7e6036a5fc54362bfc530c55ff5587a1 *R/pois_linear_common.R
f58281271d1da68c451190e6f03f1a07 *R/poissonModel-utils.R
e3805b54eec87447b3f7172d3cf4e33d *R/process_matrix.R
5e094f4e49dbf9e1e9e618f7ee5bb9b9 *R/remove_outliers-visualizeQTL.R
b4fe12876c37f8a22cde06e9701eecf0 *R/scQTLtools-package.R
8a5949885071bc1820eae9fc7dd3ff5a *R/visualizeQTL.R
a2f3b65df3ed34af7295b55212ff06f1 *R/zinbModel-utils.R
4018d3937313eadb3f53450887a8aa56 *README.md
44a898fe3f661bb488c68c5dae424dbc *build/vignette.rds
e4c706180522ef00b85bf522cbb62fa2 *data/EQTL_obj.rda
8fddd1e367f1874ded5f9e9f634faadb *data/GeneData.rda
a7146cce45186e32ddccc0c360ac2ac4 *data/SNPData.rda
d85b3d61e6602a99bb8ad4157edb364f *data/SNPData2.rda
7d4480b50b80ab3287f0c0ff8f1e6fec *data/Seurat_obj.rda
d41d8cd98f00b204e9800998ecf8427e *git
d6872be589e5e0f001b4ce14afd8fa49 *inst/CITATION
8f41a62774c58aca0524de707b0f8960 *inst/doc/scQTLtools.R
85e68a17c13be5b4082541f24b1d6463 *inst/doc/scQTLtools.Rmd
b407a49fe0b9c2eaa7ee418e55a09e68 *inst/doc/scQTLtools.html
28d4375a6a6df10cafeaa229a9eacf06 *man/CPM_normalize.Rd
a7d1fd93b68d8438cd30493ba849bfe9 *man/DESeq_normalize.Rd
1250f5234a0452e2b4639b66b092fc19 *man/DataSet.Rd
26d633fe1006234e2d2d385ac8ff8de6 *man/TPM_normalize.Rd
2ef7acc0997b68c3c3e4ca936048918d *man/adjust_pvalues.Rd
83a220f3902e218b85022cb3fe1ebebd *man/buildZINB.Rd
5ec821c11dd6a6d72d85036405f994fa *man/callQTL.Rd
893ce383d41fcb889da3c3c638e43052 *man/checkSNPList.Rd
783bda70a8a1f065847a6875bbe1731f *man/createGeneLoc.Rd
4d861f6d2cd477ee5773c8559d4149ee *man/createQTLObject.Rd
4d14f67ecc08b84ab0d09ee634989ef1 *man/createSNPsLoc.Rd
3cb0238a228c6e7d1e23eb1a1e6acb7f *man/draw_QTLplot.Rd
e431259bf63eae252ddcb0681d451ed1 *man/draw_boxplot.Rd
84919e35aa68f48777859a60aa49edca *man/draw_histplot.Rd
ce8fbe0d433fe676138f56ed76e3eb87 *man/draw_violinplot.Rd
cce6038175e180de39d8670c48719ae7 *man/eQTLObject-class.Rd
f283c428fea98d93daf3e11e6e4609cf *man/filterGeneSNP.Rd
03037b85a41727f52ddc78e2243310f8 *man/filter_by_abs_b.Rd
40f157c051fb66bae9dbc04f3913b5a5 *man/get_cell_groups.Rd
7af2a5c001a1d9249d14619325887789 *man/get_counts.Rd
3b9c93fc3ad4eb97a2c0466b42fab3eb *man/get_filter_data.Rd
18cf7e6ee45e1712d2d35d7d3a5fe48c *man/get_model_info.Rd
8fd838f488668aa33a28ef713f6b2b35 *man/get_raw_data.Rd
cb7b9694bb89f1a4ee66a24d70c04c0c *man/get_result_info.Rd
47d7859ee951ecaec71691636597019d *man/initialize_progress_bar.Rd
94f5f18bec5d5367c0296e9ccd591bb2 *man/limma_normalize.Rd
1fb2a63921647a02d3723e0ec84f186e *man/linearModel.Rd
0d0785704b82473282297acffc5e8255 *man/load_biclassify_info.Rd
b60f20f6486f88eea7515baae4f3627b *man/load_group_info.Rd
edabb541b2a73126daab1472c512fff5 *man/load_species_info.Rd
464e9bb9c3797ef4a7e96dcdb2b6440b *man/log_normalize.Rd
1227dc421315d22504dfa95c10d474d6 *man/normalizeGene.Rd
e0f19854936cb6dd462bf49b96305dc4 *man/plots_theme_opts.Rd
32bfbaf45a5def9d90b6c1ead8c2a121 *man/poissonModel.Rd
b26bf8fefe39fdfa0ac36403e48455ac *man/process_matrix.Rd
f5b5a8aa28c18cb9ce8ebe9039cf60eb *man/remove_outliers.Rd
b32f9f4fac118849373cf2d0c7e07296 *man/scQTLtools-package.Rd
04e6ffe6b4bc98868a69524c05d798a7 *man/set_filter_data.Rd
c57fc4d4bd4c5652d7ae0ca4d7b04d10 *man/set_model_info.Rd
bbd25f1f41a1ffa8fd9517c4c8253010 *man/set_raw_data.Rd
6027c797c7a2d01b8aab797e8e9c87ff *man/set_result_info.Rd
49a3c273fcb51374cb45c33d692b04ee *man/visualizeQTL.Rd
a2cd3813eb888aa5990e52c9efdd915d *man/zinbModel.Rd
3f04f51022b73978dd65e46b978e5b21 *tests/testthat.R
70cca6a461aa6fe7e520150d5cb703a8 *tests/testthat/test-callQTL.R
dc13e884290f82510469cd0a88456896 *tests/testthat/test-createQTLObect.R
84ff02d61eadf54017405dba9adaede1 *tests/testthat/test-filterGeneSNP.R
a0ce44afaa4c263df3b37177b3c77cf6 *tests/testthat/test-normalizeGene.R
ea97e34f38e89f3763ed40c32e0b9cf9 *tests/testthat/test-visualizeQTL.R
01158feeb2f72729917b27fe89f1977f *vignettes/Comparison.png
5b9f55b25ee5fa00f5b1c20adf6242bc *vignettes/Overview.png
50a349bbaa1ede5f71f949eb84b058c5 *vignettes/header-styles.css
85e68a17c13be5b4082541f24b1d6463 *vignettes/scQTLtools.Rmd
