c5ed915713c0cabcb6ee33f9d0174851 *DESCRIPTION
5db7cecee43796d68fe4a6aa56171338 *NAMESPACE
01524b8f52442a5abf467f53db30aff4 *NEWS.md
5b524ce8859595cc493c2b1400b0bc3f *R/0_opts.R
f681caee8151ad52b08380efeec7daa7 *R/1.1_cif.R
df4ea236d01808b985027217593ed743 *R/1_main.R
6347bf24a834a583590486dd1a2a157f *R/2_sim.R
efdae9e24d01726f5d39fe1552f2fd56 *R/3.1_spatial.R
4ea308b8facc2284ac8efd8865ed8997 *R/3.2_dyngrn.R
5f96d2bfc4abbcb2364bc4c6d7960846 *R/6_technoise.R
5e7b15775bf7d3c497f984c927f75c51 *R/7_benchmark.R
31ef2418db3e118f8995672b42e5bc0a *R/8_utils.R
d486e5056687a0ff0de5d985a1257c82 *R/9.1_shiny.R
680f38b77716c29c5a4fa6cbd995b957 *R/9_meta.R
e23a98bae0e5c0ece9822c4cb1960133 *R/data.R
d510526104bbb601eea15563dd5c730a *R/imports.R
4eb3c6a2a65916cf9133196e266017b2 *R/results.R
120548605f40fb84d8b2e2191635c9fc *README.md
b7ced17fd2e4072d8a19cd8e12d50220 *build/vignette.rds
b70887d659128c1db0f7ff80d1d7c4f3 *data/GRN_params_100.RData
a02bf1d6f95f1f823755c27261c3505c *data/GRN_params_1139.RData
eda11b6db04a4df2a2592c78112dbada *data/datalist
5e05f4a539e4d36f424dd3722fde47f3 *data/dens_nonzero.RData
5a5592916bc67ed502b4a7dd12415277 *data/gene_len_pool.RData
3854ca240fac25fa14fdfd542e392ac8 *data/len2nfrag.RData
05eb4d2dce3a335fb9eae0c94c92b8bf *data/param_realdata.zeisel.imputed.RData
2eeb8c996be8d65022cbc9b5c45599f9 *inst/doc/basics.R
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23490001dc28955a8f45f4669a9c2265 *inst/doc/spatialCCI.R
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a7830aa357611dcc57531ce7f3e189e7 *inst/doc/spatialCCI.html
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3784c76ced55a3ec3dd7446ecfcb851e *inst/extdata/Newick_ABCDE.txt
1a5165aa278576ba1b935faa6afbec30 *inst/extdata/Newick_animals.txt
dcd2489eb55c2348c90428f790a7de23 *inst/shiny-app/app.R
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0cf82bd2110af0a0348e42dea1ee5294 *inst/shiny-app/www/output.js
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03c584a5778965b18c14bd21f6b78a2b *man/GRN_params_100.Rd
9fa9c4b8b6c122d0c56706d235bebe6e *man/GRN_params_1139.Rd
8f68954ad599b26fa451d239b32f5f70 *man/Get_1region_ATAC_correlation.Rd
90dc5a221df8bb3dc4231f7657683488 *man/Get_ATAC_correlation.Rd
94e78c0401f9226962ae7812bc3c1ca2 *man/OP.Rd
6a8aaf4f9cc716b0e0c31704a546d7cf *man/Phyla1.Rd
b7aab8475855d556c8107544e6fdfcb3 *man/Phyla3.Rd
ce3cc3b573499ba6c5062525fdeab5a1 *man/Phyla5.Rd
fac56efb76fb0179fc67b8ec4349882b *man/SampleDen.Rd
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23c50efca5ba8db1cd4d345f2ae38144 *man/True2ObservedCounts.Rd
6cae86a2572072ea5d2d4652d1fd5cad *man/add_expr_noise.Rd
3f68c9466045199a12ba26a34f5ff452 *man/add_outliers.Rd
7169488905cce6b94756d0dbcad7bfe4 *man/cci_cell_type_params.Rd
136b517fc6d97de9801cc5c6228b1096 *man/dens_nonzero.Rd
2a9e862cae6192147c9f726ffe94265b *man/divide_batches.Rd
3f9fb2dede2a3dad0b45afeb4966831e *man/dot-amplifyOneCell.Rd
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7626329717f2dfb0aef28ed868ce1c21 *man/gen_clutter.Rd
8ae1db99d7e3886242713f6a5c24a0ed *man/gene_corr_cci.Rd
303f2ba7c9560628ab880cc793eac1d1 *man/gene_corr_regulator.Rd
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98a912529419cc1c26b8bfd3fa6b77b3 *man/match_params.Rd
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36d9e80ff6a4888daefb6e348a34a9ab *man/plot_grid.Rd
bd33e26950d4ccc431f72935cbe473bf *man/plot_grn.Rd
529751f978dba8bbf052ca3258f7c2f0 *man/plot_phyla.Rd
e6811790a63db56a8c03871f0055adc8 *man/plot_rna_velocity.Rd
53533f66220e54b114a0a7c6a9375ecc *man/plot_tsne.Rd
a736ef534fa0935fc3efb4b6b02d94e1 *man/run_shiny.Rd
4c890e50ff01c871e73ec095ecda3267 *man/scmultisim_help.Rd
28cf96ba2fc631003c742774bdfacbed *man/sim_example.Rd
cdde83a371e3ad19dd23b54ea6dbaf1e *man/sim_example_spatial.Rd
d36d791aff9acbbce4680cd1cdfec3c4 *man/sim_true_counts.Rd
62895136d889d73a4a14aa8ab3ee7f64 *man/spatialGrid-class.Rd
2fd7cbd75fb5f7881b4425618c7ae0bd *tests/testthat.R
cbe1db8b5aab5075c25963c86a7d9dbc *tests/testthat/test-1_main.R
88f90de0f045bce46016b9df3156f4a0 *vignettes/basics.Rmd
8ec01811bcec2d9b75e1d04db74314b6 *vignettes/options.Rmd
008d4435d63807818b5bce8b75963eb3 *vignettes/spatialCCI.Rmd
ec09ca31e2e4e115d75a6c677799d8f4 *vignettes/workflow.Rmd
