00494c7f90a9841231a0d183ea6acad7 *DESCRIPTION
3399b3ed0988a89ff6f190688b68aaed *LICENSE
66ebb342b7563c8e03534b69e1e935dc *NAMESPACE
1e46900adace056f34d1153f7f16c37e *NEWS
de4425ba56e6d286369e799cbdf1fa1c *R/data.R
d06d91bf57ef891d2ae5ae0330098e8c *R/sarks.R
91cb21110d0d8e11b28ca05632f3e2c6 *build/vignette.rds
a5eaa5ddcb95a439375dab39f4d6f2de *data/simulatedScores.rda
2635c9ad6709a9a0d8185ac68e8ffeb8 *data/simulatedSeqs.rda
f122a720ce464ac92b0eb5c16a7eee88 *inst/CITATION
74cca90e9dc2a00be6d088d1afeaa82a *inst/doc/sarks-vignette.R
ef1c8962248d74b292e86c72a1c41303 *inst/doc/sarks-vignette.Rnw
3eeadf196537e25a4b2c4d9448949bd2 *inst/doc/sarks-vignette.pdf
1b9052d7f7861a194dec3e777ba4b2b9 *inst/java/sarks.jar
b706499f22b5052e17577cea979c7eec *inst/unitTests/test_sarks.R
c845763d94df44c470bf75fa266e4d11 *java/dcw/sarks/BWT.java
ed3fd06f4e673027bcc1292f6e2077a1 *java/dcw/sarks/Sarks.java
c75b21313d96bfd5697d101b271b1675 *java/dcw/sarks/SarksMain.java
248752835a4c9c63880700449d1a9644 *java/dcw/sarks/SarksUtilities.java
ff5e21608df7e75d5ecd3f9b61fbe160 *java/dcw/sarks/SkewSuffixArray.java
dbc8b1441844ce868163356ec8fdb6f3 *man/Sarks.Rd
372393a018e466d2714a582572dd28ff *man/blockInfo.Rd
bd47a52e93d2c78f331205e657cf1b3f *man/blockScores.Rd
2d31b36a1bb53e6daf3230d71a272b9a *man/clusterCounts.Rd
c75d5a75c319f8719ecef4f381a20b89 *man/clusterKmers.Rd
2b47dac7168b03734711841f6a8fdd7b *man/estimateFalsePositiveRate.Rd
c23d050255a7cd4b59914a17aff2c75f *man/extendKmers.Rd
08752fcaf37c5170aa0fc58336ea0d5d *man/kmerCounts.Rd
562bd5d791cb2ca7dd24e5fa55ffd82c *man/kmerPeaks.Rd
d2df9d27799a67c3006c69aec4ec0a51 *man/locateClusters.Rd
4e60316ec1b1ba06d136a188bdb2790c *man/locateKmers.Rd
358598b9d197de80495c9d50df16d4a7 *man/mergedKmerSubPeaks.Rd
3a21cc1189304b1c2d92c1318fc0b6fd *man/permutationDistribution.Rd
38cea23dd0553ccd257ea2b7daaa754b *man/permutationThresholds.Rd
bb9a3d547ce4909bf99a9a142ad18883 *man/pruneIntervals.Rd
c849bc0fa8d218af81b2ae27098ea00e *man/regexCounts.Rd
a68cf5bd79da457c71c0d52ae4c34d77 *man/regexLocate.Rd
dd5e33fb0d7a0613c0f904467df675c9 *man/sarksFilters.Rd
76a7c98cd053b248e1c47ce86e244dd4 *man/simulatedScores.Rd
b2bd35c76ea162dc8f821357ee007da1 *man/simulatedSeqs.Rd
9fe7d27c37ad7df55a2ce92724133ddb *man/sourceBlock.Rd
3832846f63e1a5542f95a51d2d4d17d9 *tests/runTests.R
ef1c8962248d74b292e86c72a1c41303 *vignettes/sarks-vignette.Rnw
60e507d56ba5a666aa5f1232bd90efd8 *vignettes/sarks.bib
