a670275d89eb5255c175314c41651afd *DESCRIPTION
275545f6af8e6b52eeac08849f670d8e *NAMESPACE
d32963951ae8416ef08d7a84b1b30338 *R/AllClasses.R
0826ad996b0302bda6436fccef8be017 *R/AllGenerics.R
a1a4f73bfd51bd30a5bc41ffc50e3c67 *R/Roar-utils.R
e3f0fbb4b87311b383d037fbc4e50acd *R/RoarDataset-accessors.R
489507d3534282784297e659760f1c8e *R/RoarDatasetMultipleAPA-accessors.R
bb57ac624e12bca75be6139c874e7e21 *build/vignette.rds
149417c2108d12e7d03428d6563679ec *inst/NEWS
64b9391e19d0225eb95e314dffb15f9f *inst/doc/roar.R
8c5bb163a5463f5941704463d1537aa5 *inst/doc/roar.Rnw
3f3dd7fdbf47d653c509d50dd2150616 *inst/doc/roar.pdf
d6a461d69e9e1a2fb35f2756c165bf2f *inst/examples/apa.gtf
c116729be4ff05275464c0fe7482550f *inst/examples/roarWrapper.R
c1268bdf272335fb4e749df647e3018a *inst/examples/roarWrapper_chrBychr.R
0e8e96ac19b016d1eb607e06f8e2694f *inst/examples/roarWrapper_multipleAPA.R
5eee18702c5515f6107226b6e7abd5ca *inst/examples/roarWrapper_multipleAPA_bf.R
402939bc3dd4b864b8a57fad16db3b1a *inst/examples/roarWrapper_multipleAPA_chrBychr.R
a0de9209260408877b953dfc2bd98441 *inst/examples/roarWrapper_paired_chrBychr.R
063453f1440501c893d94076411e6b25 *man/RoarDataset-class.Rd
4a680fe1ff1494fd811a56dde5a09849 *man/RoarDataset-constructor.Rd
af9e132f654597e9b12e7f8e6b0f1e27 *man/RoarDatasetFromFiles-constructor.Rd
365a564a12d66803effc989a0109d019 *man/RoarDatasetMultipleAPA-class.Rd
699f6eab0918d75b4db343f6394e4394 *man/RoarDatasetMultipleAPA-constructor.Rd
35d231e963414991d74c1922767ecb03 *man/RoarDatasetMultipleAPAFromFiles-constructor.Rd
88bbd0f310a9831e0a4e5629d3780b73 *man/checkStep-method.Rd
e40d3d4964fbd34d17c996c9e0ee563c *man/combineFisherMethod-method.Rd
4e4fb2f05bd437133e38d864158faabe *man/computePairedPvals-method.Rd
166e3e78113f62d8f99ca1bc6c90a459 *man/computePvals-method.Rd
a4523450cb64bbb3e220f62ff599c77e *man/computeRoars-method.Rd
19a8a0c3c11ba2846c6d5ed3590ddb71 *man/cores-method.Rd
1c9a464b1a78d6196d4bc4b9b2956147 *man/countPrePost-method.Rd
e351eccdea27285262d41b2c9f0f2619 *man/countResults-method.Rd
33afed18b722bac92a64b8e02ea88d40 *man/fpkmResults-method.Rd
7eb5e75c3cb37557a5499b359b70a8b8 *man/getFisher-method.Rd
b9a46b03714c9aacdd70e105ac6d7ba5 *man/meanAcrossAssays-method.Rd
ebffbaecc10d2cf4e133a18ede934450 *man/pvalueCorrectFilter-method.Rd
04fbbadfb4165796e2ba5e1ee3910054 *man/pvalueFilter-method.Rd
c846be04483b443c9d02f4d4fbfb2d31 *man/roar-package.Rd
11c35ec451b1a2adca3a52186cfe5bbd *man/standardFilter-method.Rd
f883181e30737359bdd27ef0af3c7ddf *man/totalResults-method.Rd
8f214d2d321e62e68bfa066b23270d81 *tests/testthat.R
4f41bdf0168680db8ba513c4b96dd86f *tests/testthat/test_roar.R
c14d791aa14a17f11bee660a36aef98b *tests/testthat/test_roar_multipleAPA.R
c79261f9afa15e783e8f26bbea4c37b9 *tests/testthat/test_roar_results.R
83237e346c7769e194d52b18034e9803 *vignettes/prepost.pdf
8c5bb163a5463f5941704463d1537aa5 *vignettes/roar.Rnw
9488032add13afa3148d091e07a8d9ca *vignettes/roar.bib
