2791cc057c11a6c83afc2da99d0f704b *DESCRIPTION
9e98ec5eb3e7636dc06f77327ca26e20 *NAMESPACE
967bd4c8b1d91af0b6c0585c12913cc5 *NEWS.md
7e02f9cc01e269439719e7167e4d0932 *R/DFformLZ.R
94dbd75d94acb614c61a7dddd3dcfbb6 *R/chooseHclustMet.R
c41b4a4285351cfb8e7733f6b3a3849d *R/cleanCrosswiseMatrix.R
acda3e1b1e525a272b444934e17ea417 *R/createUniverse.R
01c8302ed0bf4679cb3c7d530a5a43e0 *R/crosswiseMatrix.R
f7a2917ff3653f166cbd33ccedb655cb *R/crosswisePermTest.R
c1409a56ca7fa244e5772f60a2930e07 *R/getHClust.R
d7a7ee7866c42495c06d6dd9122fef97 *R/getMatrix.R
b60379a2d64870d34f7b4707f994d857 *R/getMultiEvaluation.R
0006554176df162d0ee58223f9233141 *R/getParameters.R
a9413f1b48d0baa4604e7013cfa74bee *R/makeCrosswiseMatrix.R
0cd0cfb413b6d543150ccc2e93bb05af *R/makeLZMatrix.R
67212665cd51ced5d307578885d6a013 *R/multiLocalZscore.R
96f269bcc522d4cf9ecb70ec1047d606 *R/multiPermTest.R
3d59e892641d9768f69282ace9223e52 *R/plotCrosswiseDimRed.R
a9b131e6c8599f6a03604ba518650165 *R/plotCrosswiseMatrix.R
9d5eeceb327cb250a8dee021986f3cf6 *R/plotLocalZScoreMatrix.R
828737cc256e97b3ae2706e6f326e1c3 *R/plotSingleLZ.R
4c1d5dbee7f0354925bde8517ee896a6 *R/plotSinglePT.R
ab852bf9af954fb4141bbc0935ed48e7 *R/randomizeRegionsPerc.R
c1ae340e6dc7a314f21cd6daf2e5c29a *R/regioneReloaded_classes.R
75393ecaba3ac709d5db728321d30b7e *R/regioneReloaded_data.R
9c3b44e9713ae4c9df5f2abe13a39f5c *R/regioneReloaded_methods.R
8488b4edf7e98e06d57f79499be01337 *R/regioneReloaded_theme.R
1f40433bd8ae74ed1bde73f8281b21f7 *R/similarRegionSet.R
e2d721f2555c4638b7d4a93e797134d1 *R/subList.R
47db51fabe3d061566e98d9b925029e7 *R/sysdata.rda
be04d4798f3da1f947caa7fbfc6e879b *build/vignette.rds
440ba1cf7a6b42b7a425708d526d7f66 *data/cw_Alien.RData
b5cf6418d8607b867e8ead528b5a7512 *inst/doc/regioneReloaded.R
0eeb4123bb56a0aeebe4cd3ab15a411b *inst/doc/regioneReloaded.Rmd
5087cea528065c55aa19b63bd9df9d1e *inst/doc/regioneReloaded.html
31a9a7eb2b23fb73129c56b7659f3c88 *man/AlienGenome.Rd
e12538712278d1bc63f16f8d3f3250ed *man/AlienRSList_broad.Rd
dbb8b36cf48430527774967fa23331fb *man/AlienRSList_narrow.Rd
76ae6ebbd0c5b5a247e142635e577289 *man/DFfromLZ.Rd
8aa5da7d9183ed44df5e78d22dc57a61 *man/chooseHclustMet.Rd
5168c157b5d716f5a7913a8870e53989 *man/cleanCrosswiseMatrix.Rd
ed45bbebe4981b43e449a6df9f8ad2b8 *man/createUniverse.Rd
30a28da7c9e2a91a75abc3fce9e292c2 *man/crosswiseMatrix.Rd
9d676960a87b5d72387212bc4a1cbcda *man/crosswisePermTest.Rd
f07e576f3a97f51d32a17ce9a546dd14 *man/cw_Alien.Rd
10ff3b88e317bef85a65abc08e0168cf *man/cw_Alien_RaR.Rd
47f152cd4f813cc068ce75af22a3f285 *man/cw_Alien_ReG.Rd
1bff6e238f525a4d5a56b9314cfe04cb *man/cw_Alien_ReG_no_Square.Rd
8f6572add5edf2a2fe79bc4377e23981 *man/cw_Alien_ReR.Rd
ddbc4ebde7372a73f7b0c8b9081ed38e *man/genoMatriXeR-class.Rd
4419279ba3ca85db87f351ef1d9207cc *man/getHClust.Rd
5f5b2af9dda20491422e70ccb69b7e6f *man/getMatrix.Rd
6c9a6448d98d3eff5b90f1efe4d373a7 *man/getMultiEvaluation.Rd
8537db7d2090000c76e527798b7de0b4 *man/getParameters.Rd
00631170042c03e4d5b772e824aa7429 *man/gmxrMatrix-set.Rd
cb39a81e160598ecb169ec038a309c4d *man/gmxrMatrix.Rd
d8bfb13ebd4e4e6ee18bb3cefb494886 *man/gmxrMultiOverlaps.Rd
655d6e059e6f9919482c358f94c0425f *man/gmxrParam.Rd
43638cd1006a6ae579cb93d41a61fcc7 *man/mLZ_regA_ReG.Rd
b85ab1903ac0c9cd6fe6c2f6d6986fd9 *man/mLZ_regA_ReG_br.Rd
caec143c88554ca91089fb2bc78702dc *man/mLZ_regD_ReG.Rd
278a85e01873e5c1b210e30b1e775f46 *man/makeCrosswiseMatrix.Rd
165d454c667d20140bc6f4f0ddf45e87 *man/makeLZMatrix.Rd
37ce43795d9a09b348238f4fd0a85091 *man/mlzsMatrix-set.Rd
5ad1c0fff83c2d6751ad673c2febb88a *man/mlzsMatrix.Rd
99eba6ca63236e974793e4e110b4369e *man/mlzsMultiLocalZscores.Rd
e9d9f9addb17b3caafc23ddd0120b0f2 *man/mlzsParam-set.Rd
cfe5cc97994af8d3b7181ed5130ce17b *man/mlzsParam.Rd
198aeb39ea057d443b4ad8306522ca88 *man/multiLocalZScore-class.Rd
4b9da6a4db93260da140e81bed84d387 *man/multiLocalZscore.Rd
1ab664b0f052f5ba3d31dba1c82af539 *man/multiPermTest.Rd
4d5a66e256450f414656bf7919236fac *man/plotCrosswiseDimRed.Rd
f03b43494dc2bed80c720df76ca89123 *man/plotCrosswiseMatrix.Rd
bb83ba7b55636ce9ed1b3ec12d08bf88 *man/plotLocalZScoreMatrix.Rd
b4bab03f84a709c55b777da772985951 *man/plotSingleLZ.Rd
af42797fd3352a244017887a1d7513f9 *man/plotSinglePT.Rd
0a7caa4ca9a50532647b679c324a91d0 *man/print-genoMatriXeR-method.Rd
94d28d861074e1fe0d5235801d6d7075 *man/randomizeRegionsPerc.Rd
fe9e1bca32807b0569c229d2df26e298 *man/similarRegionSet.Rd
1448c6ac79c95601cd03e6b4da47a988 *man/subList.Rd
169cb2c886e9a5afe3dd9c88cd3459c8 *tests/testthat.R
8ffd4f6bfb00e80ab02878f1ba5f8fb6 *tests/testthat/_snaps/crosswisePermTest.md
2b77e66da46d1c25fd66d260cb72278a *tests/testthat/_snaps/getMatrix.md
ca80c72b71fc23f44cfb3ad2b46d23e1 *tests/testthat/_snaps/getMultiEvaluation.md
4bc1456cb18fa48d5707e604401812c9 *tests/testthat/_snaps/getParameters.md
434eede60b12528115251a1582c727dd *tests/testthat/setup-data.R
f021054353c7ba423cea235d40db46ff *tests/testthat/test-crosswisePermTest.R
92cd19c72b408c4ca886c79d0002a0ed *tests/testthat/test-getMatrix.R
3fce343b11d8c953734e5c3331b3f279 *tests/testthat/test-getMultiEvaluation.R
7649153889c5b93b9b9c8a11f699b4c5 *tests/testthat/test-getParameters.R
69199e7934616544497c80369ed4cb9a *tests/testthat/test-multiLocalZscore.R
87cbf4af02433317cdb44bd8bbe81d7f *tests/testthat/test-plotCrosswiseDimRed.R
be0b8f546eff5d9df9ae284ab93fc7e5 *tests/testthat/test-plotCrosswiseMatrix.R
fc29a2593e7106ab03cda9027acdb73d *tests/testthat/test-plotLocalZScoreMatrix.R
1e92630a601b776b3a5fea6c9f6a866d *tests/testthat/test-plotSingleLZ.R
668083946c6fc102d507d0ea8ab8d323 *tests/testthat/test-plotSinglePT.R
d1f10a727a09f8b765bfef5bad55df79 *vignettes/figures/AlienGenome_scheme.png
ef93f4ebe72a58ece73d00319d72545a *vignettes/figures/cohesin_complex.png
657cc39fe11c22f96a5f6a062a26bb36 *vignettes/figures/normal_ZScore.png
736ea51d174760521e238e17e51575dc *vignettes/figures/ntimes_stabilizations.png
278f1cf4ba902b3dce84c01a30acf384 *vignettes/figures/regioner_grphs.png
0eeb4123bb56a0aeebe4cd3ab15a411b *vignettes/regioneReloaded.Rmd
