600583c82db687a9bd7df4096e1467fd *DESCRIPTION
4288c4c8188fc5afb490a746548c7985 *NAMESPACE
2803942403aca46e39de8324168ba94f *R/database.R
9a288bdae45e85bc9f47a3ac33c4abfe *R/dataset.R
d0cfc7e3d0146ed2b960235ff1c4b827 *R/graph.R
45161d85fd1516202281b64a5f4a7cde *R/layout.R
35ad40d5b9e7e482f0cdd005470f4b13 *R/ortholog.R
907a0efafefdc3157e710ed5d928516f *R/plot.R
7ccac643d875f228c710b6b34e61b3d1 *R/ppi.R
3885b6eb15bb7cb0440aedf06f369e4d *R/tfclass.R
b6097035b4dae5c938be60021bf4f904 *R/tools.R
0538a504b390f965c757b88d010870b6 *R/zzz.R
0b64c8c51317c38ffc0333759e9e68fa *build/stage23.rdb
939d408ccc5f8cba7844abc5eae1f673 *build/vignette.rds
39cf1ac4f3cf9c8cc4705db309db9578 *data/biogrid_hs.rda
ad0a8c78b1877871d539d9de7f700ea3 *data/biogrid_mm.rda
d73c41f429148f80af1ff717282917fd *data/datalist
ae075240be742c0969aad9c94e6a5e31 *inst/CITATION
88799e12a0bcb0bfc36b476bcb5951ad *inst/NEWS
2bd1f5b9fc49bd5ba9911be8dd79973a *inst/db/database.db
4cdcb264cd8a7562edd527720add4f70 *inst/doc/Introduction.R
e1ea1c20ccf4c32cc3b492e5e92e843d *inst/doc/Introduction.Rmd
e6870a0fc0e8bfb4923f3a216a8b896b *inst/doc/Introduction.html
98b9ba03259ae6d5fc4516e7a658a10a *inst/extra/ESC-expressed.txt
f658dbb8940b92bfdafc3dcf2cdb698f *inst/extra/ESC_Sox2_peaks.txt
fbb496fd5991c64b1437c46008ae2c4a *inst/extra/example.rda
ef10b0ee264bece1a4bc5de1d57d5102 *inst/extra/pwm_mm_logn.rda
437a3b466c73481572d3acda987eacef *inst/extra/sox2_enr.rda
8bf034224b0f19bbbb6cb98c90e979af *inst/extra/sox2_motif_list.rda
380492bb98fe9ecd48241bc9ab42771c *inst/extra/test.R
f41c2ce67d4c05dd947ee755befef8e9 *inst/unitTests/test_findTRM.R
01b478940cf224ac7d62d0acd31fe431 *man/annotateFreq.Rd
b48dd10357e07c4b38b208e584519524 *man/annotateModule.Rd
8141c017242dfd0e864366c0f112c591 *man/annotateTRM.Rd
a4a3fcdf308028c65516ab469321f964 *man/biogrid_hs.Rd
a56b89fbb7be9c2379930c4b41dd730a *man/biogrid_mm.Rd
7af09c8e43b0cf382abb6a8419a91023 *man/findTRM.Rd
0ef2fcb49929118ed4552c7f24efe61b *man/getAnnotations.Rd
a0eda0898758369f060931f5a059d9b4 *man/getBiogridData.Rd
b7906dfa72bea7b522555cdc9517a5c3 *man/getConcentricList.Rd
d29a73d4d17210f9adbe7c009476fda8 *man/getLargestComp.Rd
8576a5d96686a95581dde1d9d87603f9 *man/getMaps.Rd
e3d71af7bb6f8ef7849556c30cb503a8 *man/getMatrices.Rd
2a6caed7e8e52f781fbd3b0f6194a158 *man/getMotifsFromEntrezgene.Rd
184c165a09a5ee1b60f0be3c0f51e208 *man/getMotifsFromSymbol.Rd
3e8048ee110ccbae977b421561e961ce *man/getOrthologFromMatrix.Rd
b7fbdb9f6cb9ceffbb9af413f956fafb *man/getOrthologs.Rd
7e2be010f302db37b0d446956fcb36e2 *man/getOrthologsFromBiomart.Rd
5d6e1ab697ff05a748248ecdda6060f3 *man/getSequencesFromGenome.Rd
c092a8165313fdc870298ee2e444f1a2 *man/getSimilarityMatrix.Rd
bcba11b1da3e186d5b4fc187e534aa3b *man/getTFclass.Rd
db439be9f58248494c9b8cad97b15a3d *man/getTFclassFromEntrezgene.Rd
d76d66cf41a02d8de0a397ffbf99b0c7 *man/getTFterms.Rd
bc096c1904f8d7ec9b284017350cfe19 *man/initBiomart.Rd
268b3b4dea5ec65aff1f31de1584a2d9 *man/layout.arc.Rd
6a2fac617e66f04747525932f8134470 *man/layout.concentric.Rd
e779d55f5bcf70cfea542b965b0b073d *man/plotDegree.Rd
682103ec5cbadc90ebf4ebf7debb543f *man/plotGraph.Rd
aa2a704acdc03b6632ecb31c59b92fa0 *man/plotTRM.Rd
02a5c4a15a01709db404c8e8566850ac *man/plotTRMlegend.Rd
7d31c64d729fb4641ccd9ede17ce02b4 *man/processBiogrid.Rd
9311e6d7d7803bedabb1252cffd13d14 *man/rTRM-package.Rd
4deec355a3af1d1792b253cfdce91a40 *man/removeVertices.Rd
6a963be12a747514657ca489864365d0 *man/writeTRMreport.Rd
0daa909d2efb92e2e0627df5412e790c *tests/runTests.R
e1ea1c20ccf4c32cc3b492e5e92e843d *vignettes/Introduction.Rmd
ce495b966cb5e0ecbe7db38841e544a8 *vignettes/references.bib
12b5b2aaab42fc64bf31fd0cf3db4804 *vignettes/workflow.pdf
