b810df3ea002615d07c819b0ecdb5ed4 *DESCRIPTION
302b3991632a0c86c313b30cc2db53eb *NAMESPACE
ebb4e49b3ce68f8fb22491ccc857afaf *NEWS
3bba0adc77ac613f73cf474e266527a5 *R/AllClasses.R
207997f93e4b6806af05c761608469d7 *R/AllGenerics.R
cac07b21cf7ce6a9cff0ac5c36bd6e43 *R/Raw_Methods.R
fc96e56c574a57a2acd093ea646e8e8f *R/RcppExports.R
e7043c4c134c4bb2771155649f35e700 *R/SetMethods.R
1b0c3f4fa4022134b441012ae6e5f035 *R/ShinnyApp.R
14a8401746f32a101360eb1cd2b8199e *R/alignment.R
826de6cf9c11b69a49176b93b08c0e7c *R/annotation.R
91d8344fd6595af63e5c9201aac00068 *R/app.R
8890dde18263dbb59544175db19cea98 *R/package.R
b29496a7aeafb6eab9887221307e8a7a *R/peak_detection.R
e0ef681901465d24f47f9139cb2c086a *R/ptairMS-package.R
eefc03bc0882ee3243f544756a7fdda9 *R/read_data.R
991b86c7ba8005d59a0d60f123ce155e *R/scorePlotly.R
c2a7a2c7382387ac3504713ced009a5b *R/writeEset.R
c54db169bce57345ee1efde97addc66b *README.md
21e3d395ddf5186317ca8fb72dc93df4 *build/vignette.rds
15ecb99f37bb8452f8aea32f01fe9cfa *inst/doc/ptairMS.R
36d3051a579a5e662313bb66b2aed270 *inst/doc/ptairMS.Rmd
9e75167a162ee192ba11fb9631183825 *inst/doc/ptairMS.html
b7a4178fbe224ca0cee464049d856bb8 *inst/extdata/reference_tables/HDBD.csv
1c77723a54c3fe2dddc4270d2d8aa296 *inst/extdata/reference_tables/atomic_isotopes.tsv
c3bff08906f0f15ec37ac28fc34122fc *inst/extdata/reference_tables/atomic_weights.tsv
356ff96b25b7a29e7428188f8e2f2866 *inst/extdata/reference_tables/calib_table.tsv
1c1534659600dadec640792231f0a710 *inst/extdata/reference_tables/manualAdd.tsv
cb2775f2487d17f1a3436a15946a2352 *inst/extdata/reference_tables/vocDB.tsv
cbbebe3c010b97c69d3780bd958cba46 *inst/script/documentation.R
d82f9bba5a2b2ba3781afaf46151c2ef *man/LocalMaximaSG.Rd
67df3de6a9ee8b223aa5fd69e360cfd8 *man/OptimalWindowsSG.Rd
37f394af0ec0a80bf382b1e128c2eb4a *man/PeakList.Rd
9c722ee12a52de73549c14fc345b9954 *man/RunShinnyApp.Rd
e20651726158e77cd85505797bec04fb *man/TransmissionCurve.Rd
5c963cf5352dcf20afb24731176b95ac *man/aggregate.Rd
fe1bcbba8a22b3e0496283d84982569b *man/align.Rd
dba0a5d6658504ba3451ea0a7204abb8 *man/alignSamples.Rd
538773375cd036ddb12cdeb2992a1595 *man/annotation.Rd
ca1e52159d724ae97b9442294a63bced *man/calibration.Rd
592591bd2006c47f8dbb466d1fcac77f *man/calibrationFun.Rd
84224a5edeb72c62e5a3755cb101a246 *man/changeTimeLimits.Rd
4f07c910d00307a47fcb3472bf46d72d *man/convert_to_mzML.Rd
bcc9e6cff27d2e0e7caf43b78987c32b *man/createPtrSet.Rd
81501b7f6ad7ac8f2bdcfaa5f27b5a23 *man/cumulative_fit_function.Rd
aada9a7b625f0379523ffd04722db424 *man/deadTimeCorr.Rd
01bc46444ee9a85dd125fe22c6964a4e *man/defineKnots.Rd
e066372667698ef677ee310bfd878ea9 *man/detectPeak.Rd
8890185bd9a07c8d99b9289fc593cc1c *man/determinePeakShape.Rd
c663a6bfd00242a1fa3ee85861c3f3c6 *man/exportSampleMetada.Rd
67631115e782261006506481fb3938df *man/extractEIC.Rd
d8f0ddfc5e4ecace1f4af59036f3c1df *man/fit_averagePeak.Rd
2391d29a47be2c43bf5f667d069de378 *man/fit_averagePeak_function.Rd
8f70c883950a705f65f0ef7ad2704153 *man/formula2mass.Rd
f9a6b58d41f36c68da3673fc5d5ae6e3 *man/getDirectory.Rd
324671830cc82d0df9cb2d90f2a9001c *man/getFileNames.Rd
67071a0bffc35059c713c2e71f0af047 *man/getPeakList.Rd
1f55dd637f53ede3098b21bc3e3fad86 *man/getSampleMetadata.Rd
3ecba03478110246fe1e4ed73b714fb4 *man/importSampleMetadata.Rd
634bfd7a0c0fa492a7b668ece9dd2c3c *man/impute.Rd
6c1f6cd07218dd92e3c0a4cd75483029 *man/imputeMat.Rd
87d65cf3ab668f3f7819ac74a089457e *man/initializeFit.Rd
f10be346de0b2d7882f063b1318ea37a *man/makeSubGroup.Rd
dae553c5cb1b9c7af5321ebff1f7f144 *man/plot.Rd
24012c186ae460e8658a5377b4e635a7 *man/plotCalib.Rd
474780f5290d489c73df11e3f2fa209e *man/plotFeatures.Rd
2f6d7e9a65da3cc94ba38e51fccb6e62 *man/plotPeakShape.Rd
a56ef0a7cf61f120bc036287268e2fa9 *man/plotRaw.Rd
de33ea68ef6069d3453ef8a57e681335 *man/plotTIC.Rd
a05e030a692a359c4f4052dfef04d3fa *man/ptairMS-package.Rd
8b51b1fe948bcff9c3c0ce35c367aef7 *man/ptrRaw.Rd
cb5b63fb6376b1d61d8a878623cc0e33 *man/ptrSet.Rd
8bce04af899a548c92e539f328878bd4 *man/readRaw.Rd
a57fb1e0cc118c08f5d50aea9108223f *man/resetSampleMetadata.Rd
34bab6b21ad9cb7907ada829fc592446 *man/rmPeakList.Rd
6bb54e47b77863d9b5ecd1ac9d64140a *man/setSampleMetadata.Rd
e40f2d8d944e9acc87c89ba5f197609a *man/show-ptrRaw-method.Rd
636962c24d4958d2ed6040802c571f05 *man/show-ptrSet-method.Rd
d91ccadbce23ebe9c7205bdc9a9942a3 *man/snipBase.Rd
7882781791bad901651d392b976d2e52 *man/timeLimits.Rd
e463eba37201f5e3e5b182ba72bb755e *man/updatePtrSet.Rd
78bb115a7f327f7e7ec9e278b4b043b2 *man/width.Rd
782426dddd2796fcdcc670cc2059c7b0 *man/writeEset.Rd
822d6c2a640ce12b2a55116c89448ee3 *src/RcppExports.cpp
928de1f08d086f04e39de036407aad0e *src/align.cpp
7eb6f40f7b6318dc05ba3950ac2b0091 *src/findEqualGreaterM.cpp
28839eeb6203611f265738db45570220 *tests/testthat.R
e064d3d35bad10980bb7e0b9ec013357 *tests/testthat/test-alignment.R
94163c403960ffdf74df42102df9629f *tests/testthat/test-annotation.R
3bde327968ae81e9403a92a5a7b2c194 *tests/testthat/test-calibration.R
070306ced7df4647d287d7ecfb226182 *tests/testthat/test-delimitTime.R
59f72799388bcbd74d577e3d84cd0db7 *tests/testthat/test-detect_peak.R
7fcc4ab90bcbfad79e2765edf8111002 *tests/testthat/test-read.R
53c5c93b3850ce61e97dcf81583bce76 *vignettes/figures/permanent/ptairMS_workflow.JPG
36d3051a579a5e662313bb66b2aed270 *vignettes/ptairMS.Rmd
8df31b4cd838800003573a1688db2f6f *vignettes/ptairMS.bib
