c238ef6c23555f2c4a7fd4ae3675e745 *DESCRIPTION
1c1792eca618eb2ff1985264c2660bdf *NAMESPACE
3fdcdc83f41a05d57b850231e2e1ab49 *NEWS
75dbb3014f4f40ba0aa1b5b2d6bd2158 *R/Param.R
4b01c6ab0b75ddf92de110f8f99f1b38 *R/Transcript.R
cf97704907fa75a07032614fb1528578 *R/buildModel.R
4da973c924c7f11fdf2210ecd376b059 *R/defIgRanges.R
0a3ec25f0d2216112aadcd3520ce7e38 *R/evalModel.R
84c41ac2f5bcdf5e72d97fa54a478339 *R/prepIgBam.R
75077c7206e3b088265d7a74df1712c0 *R/runPRAM.R
fb488934ef2b39fa57a171c53581fbc8 *R/selModel.R
e38e17b3eb3781d0c859e0299f7a057e *R/util.R
953c9c4c72aecb1351bbd91712c3b986 *README.md
e1fc15aa32bf9be74af8da3874c6e5ce *build/vignette.rds
16c46ab9a666797523c52a116a3c1e93 *inst/CITATION
2d29e389c2953ac75779ac052f3941ca *inst/doc/pram.R
d1e5dcbcd8d5d8887e50eaf61729d265 *inst/doc/pram.Rmd
4e82659e166e02a748e180b0914ef17a *inst/doc/pram.html
6bc8dfb54b9e62665f41741b2609367c *inst/extdata/bam/CMPRep1.sortedByCoord.clean.bam
3c00bc5d9e5b4e0f16b1f0a1821d63d7 *inst/extdata/bam/CMPRep1.sortedByCoord.clean.chr10.plus.bam
cd18f07d323eec235e4f443244268ec9 *inst/extdata/bam/CMPRep1.sortedByCoord.clean.chr12.minus.bam
ddf08b29acc438c11554daf480bf1699 *inst/extdata/bam/CMPRep1.sortedByCoord.raw.bam
aca49d6b6a2ffd81f81b2f56d0b40e02 *inst/extdata/bam/CMPRep2.sortedByCoord.clean.bam
ab783a9429dbd68054ab1e202589d6f6 *inst/extdata/bam/CMPRep2.sortedByCoord.raw.bam
c72525196731ba5c7a453634e02c245e *inst/extdata/benchmark/plcf.tsv
0dc29665caca31ba0542276d3b7609c0 *inst/extdata/benchmark/tgt.tsv
312a28fd4191383057964266227d6622 *inst/extdata/chromsize/hg19.tsv.gz
0ec9c7b98e125033f6b712211c82e71e *inst/extdata/chromsize/hg38.tsv.gz
7a546ec366f0387ef4d6da49fec1b6d1 *inst/extdata/chromsize/mm10.tsv.gz
bcfe201a8da1b4b4dd7e69d6962d82fc *inst/extdata/chromsize/mm9.tsv.gz
c91b4bd76f65ff4982a7c32187a194de *inst/extdata/demo/SZP.bam
2bff64cd1a98e2a008a3a05aa3fa54e0 *inst/extdata/demo/TLC.bam
c8ff38a72ebd56b20e9b954a12f6800e *inst/extdata/demo/in.gtf
88418451ac78fa3dd45bf4bd49a8f5e5 *inst/extdata/gtf/defIgRanges_in.gtf
162b125396864c90049ee15a5fca22a6 *inst/extdata/gtf/gnc_v24_minus_chr18.gtf
a7cc0cbac78919adb1e6fcb74f8e6ee1 *inst/extdata/gtf/ig_mm10_chr12.gtf
a3b6aa1d02a8bb0f7997d6607c45caf3 *inst/extdata/gtf/selModel_in.gtf
0624089e8191beec85a3ce578e059b08 *inst/extdata/gtf/selModel_out.gtf
e88e53a580084e44f21144a99e466015 *inst/extdata/vignettes/pram.pdf
ff514d7cff02f9a47b03f3982faee5e2 *man/buildModel.Rd
0fd556aec7fff35cbf12e7f45523f910 *man/defIgRanges.Rd
1bedf0fe1bca5d10a42803dc68396de9 *man/evalModel.Rd
468133ff8d9ea21caf22224de7cbf321 *man/prepIgBam.Rd
d6a39ed0b3f042fa80db5ed3fde485c9 *man/runPRAM.Rd
68b372007ab21a86676dd00d179dd004 *man/selModel.Rd
f0db1060475ce316d8d1c1dd974b719d *tests/runTests.R
01b0926ad6b865d4fe83aaa3107926f9 *tests/testthat/test-Transcript.R
5aa004a2a27d0980fc880cbdec4b0fb5 *tests/testthat/test-buildModel.R
dca18a4e94ebe47abc49c3e4aef12814 *tests/testthat/test-defIgRanges.R
012d31e75cc6aca73ad60b1fad2ac1bd *tests/testthat/test-evalModel.R
3da8a850a1564925d9b0dc36575d7610 *tests/testthat/test-prepIgBam.R
6199efa6e95cec320031418efee6b112 *tests/testthat/test-runPRAM.R
528126956b33dda2671f1bc5f71c2c28 *tests/testthat/test-selModel.R
d1e5dcbcd8d5d8887e50eaf61729d265 *vignettes/pram.Rmd
6fc2a5bfce393f86f03ad5cc2f4ddccc *vignettes/workflow_noScreen.jpg
