a368b2e271e4ed02ddf6a2af117b7bde *DESCRIPTION
8f8c062ffb2676b031794c16270893c4 *NAMESPACE
dffa2dfcfb7e4d5b979e34a7d054b369 *NEWS
b895e6ec158f705e75281b1765528154 *R/GSAheatmap.R
bedfd9e276540fda5962e190bfcd5204 *R/GSAsummaryTable.R
e7311f69a4c14686e36a4c6061c71c89 *R/GSCsignificanceBatch.R
8289611ed74bbb28675bfc50e0a28d89 *R/GSCstatBatch.R
09cfcb1c105645ac72836b39a50f11c7 *R/GSCstatGenePerm.R
f9c484c705ebdaf91467d84499c9976e *R/GSCstatSamplePerm.R
568b5c894d29b8e97be06db52d7eb418 *R/calcGeneSetStat.R
5b67e4a04608df1963934dbfc72e6164 *R/checkLoadArg.r
24f1bf89661ab1dbbfba881f9926f4f5 *R/consensusHeatmap.R
4eb958ca486d2524189ba6dc9ccb1c19 *R/consensusScores.R
0422669b2f13de05714d2f06f0cf1039 *R/diffExp.r
cd5b8682343943358593457eb143400d *R/exploreGSAres.R
ac4eb6196be93cb067456d927759489a *R/extractFactors.r
b1f8c8ce2cc6a43238e36bceb91d776f *R/fdrGSEA.R
263017893c94aae97741db489522bfbc *R/geneSetSummary.R
c9e5a00c1bb624e7f138942ae8a70a6f *R/loadGSC.R
1ec5996d4640e757b0a896a30f401fdd *R/loadMAdata.r
562b6eeadc35a9daa8adf15052e64946 *R/networkPlot.R
ed635ea5b2907d4a09d8be5b8937c6b8 *R/networkPlot2.R
db9827e98ea717d01a004d2274627ce8 *R/piano-package.R
0e9ef0243a8a555a4f413821c8c861d7 *R/polarPlot.r
8d61f21db3e6d3111997a0f71f573057 *R/print_ArrayData.r
2e7367ea7e79036a6222f49e632b65cc *R/print_GSAres.R
87dbc67e429053cf9b6b0c8e577be96f *R/print_GSC.R
ae680bb7bae858554f717930b5cf0669 *R/pvalFromDistribution.R
641b23c8bdfcb3a8deb84399d73bba9a *R/pvalFromFractionGenePerm.R
7530441d5c3fe423cd15cc1a94fa589f *R/pvalFromFractionSamplePerm.R
5f42bbdbc4fec44aca84365cde34321f *R/runGSA.r
f0ddf1acbb58bb0c35edbea8e7777204 *R/runGSAhyper.R
0fb8639b43c48c17da0d297fd21aebbe *R/runQC.r
e212338a6c3b57bbe1cc29c672e1a6ee *R/writeFilesForKiwi.R
9773482d670950996d2975093a5fc15f *README.md
8b649b29c930d83d89daed76ac2d401b *build/vignette.rds
c9463c6485944ae643aea8b3c7ece477 *data/gsa_input.RData
88bcfd6dfceb2d596a485c2ff2c5ee67 *data/gsa_results.RData
9207861b9397afe3b4d783ea152d2495 *inst/CITATION
2ece1d08ea3f335b744c46b774955e03 *inst/doc/Running_gene-set_analysis_with_piano.R
9274af3d49409474a68d073b8aa2c967 *inst/doc/Running_gene-set_analysis_with_piano.Rmd
6952e1ebfa0486c3c3fb895234474753 *inst/doc/Running_gene-set_analysis_with_piano.html
7f469cf42f90bb376aca071ebe8a2eb6 *inst/doc/piano-vignette.R
dcb3e94393f4f4fb9e8df4db1080b049 *inst/doc/piano-vignette.Rnw
5e5ad9994da13a0e1b34f73d2ceb9cdd *inst/doc/piano-vignette.pdf
92bd1cb50f533ce93de4c8c4da4de76e *inst/extdata/norm_data.txt.gz
55100c372d0f2b8e6546c710cc294180 *inst/extdata/probe2metabolites_iIN800.txt.gz
ca5b52f70584b60d914e48dbd8d31503 *inst/extdata/probe2metabolites_iTO977.txt.gz
af282063f490df925f1e7d79f657b757 *inst/extdata/setup.txt
382bef63d8d9afd701c2a159b48e2161 *inst/shiny/css/cosmo.css
1fb3afcdd3019757ba48c018a290a245 *inst/shiny/css/style.css
d432e3145c79730b0518ea7709c931d6 *inst/shiny/css/toggle_switch.css
27c05790161a2e0ea3d68f8370d102e9 *inst/shiny/loggo.png
02b18ea6bca9571d8490acd1a0bbde7e *man/GSAheatmap.Rd
ef31697c61743f5b5f352710f33e3957 *man/GSAsummaryTable.Rd
d1cac73c2ea2d6ed410ff75eb3fff913 *man/consensusHeatmap.Rd
4cf3828e0021a1c9b1b99c48618aa2b7 *man/consensusScores.Rd
eb1e0d01eeb6e66e32b81fb77f45685d *man/diffExp.Rd
2aec953945326a886b10be71b422be47 *man/exploreGSAres.Rd
cfeb829ed2ab59ff6727ed79383d03c2 *man/extractFactors.Rd
c0fdfd8c0ee22743bc4044f7551ed6f0 *man/geneSetSummary.Rd
78f44116bf2f2dd519b490cab195de5a *man/gsa_input.Rd
17e77bcb1a1a163edb90782ccb556ff1 *man/gsa_results.Rd
e6846176f089c9d9235037c561a80ffe *man/loadGSC.Rd
65a0c1096f174504e316d0faed1254bf *man/loadMAdata.Rd
9b081d9befd03ddbd6be5d154ab02220 *man/networkPlot.Rd
74a72acbbec299755b82eff5ff99de16 *man/networkPlot2.Rd
24ea41a4c74ae52916c1e0fecdb711b6 *man/piano-package.Rd
5f9f8afa05d2b08029c3ad98879f2dfb *man/polarPlot.Rd
eab899fb30b7c68ea1b1dcf6ccfe4966 *man/runGSA.Rd
e678430e5ff51814c890db2520adfbed *man/runGSAhyper.Rd
ccbf534772ce7ce7a2eb2d29cea7a5a0 *man/runQC.Rd
840751a76a7ad1673ad7afdd07375e50 *man/writeFilesForKiwi.Rd
9274af3d49409474a68d073b8aa2c967 *vignettes/Running_gene-set_analysis_with_piano.Rmd
511e7924e455b94ba5a345e13c62988a *vignettes/consensus.png
1754a0bcf76409e34f373e8996479c8d *vignettes/diffexpfig.pdf
fce64c124dd931a88412d3e6301ecf2a *vignettes/heatmap.pdf
22144747bd6aade0aea39e80c53e3010 *vignettes/naturenobf.bst
bf7fd2f66c5039e56f85810e11109071 *vignettes/networkplot.pdf
0cbfb84dfa0da386f36253b91269c58b *vignettes/networkplot2.pdf
dcb3e94393f4f4fb9e8df4db1080b049 *vignettes/piano-vignette.Rnw
d4c6c58cba65ca4b0fe25b18e579d6fe *vignettes/qcfig.pdf
7ad8b286d542e1e0586b1a9668e8c14e *vignettes/references.bib
b373a0dac5ea7d4ac653c0ab7c3d2a3b *vignettes/rungsa.png
