e13cac81325aeca9dfb6394e6705b998 *DESCRIPTION
934bdaae9cc4edff7d822517badfb7ad *LICENSE
1ca62f193bc3356fcaedcabfe555fe22 *NAMESPACE
e2dd9d3207946847af6f3fb058036509 *NEWS.md
3eae8c9369b5d4329db079ebd17bcb71 *R/GRanges.R
c04d822216e29100101e412ad1440aee *R/bigwigs.R
cc9d9eb2ea1fcaf00275339c0d3fc01f *R/data.R
f7330fc15a48ede351f871c709ebc042 *R/globals.R
2af362da7ede7dac11e90c8ace756054 *R/iterations.R
7fdafc990ad687be0fd95ffb8b81bceb *R/periodicity.R
f00f3abdbdfd124a288ddaed17726b54 *R/plot.R
0ecae232a2940aa0ef041d3ea9f4849c *R/track.R
a323e6d546663e2885bb2aad4d7c8f76 *R/utils.R
cd9df2a66f6a19304e876153c2274343 *build/vignette.rds
2a1c192ae7f6609af2133005e5b3dc48 *data/ce11_ATACseq.rda
80adeaca563c990a1b17e96e382063cf *data/ce11_TSSs.rda
46d6a32645f410f4e4c8cfd221c74f89 *data/ce11_WW_10bp.rda
d4c40f2ab4ca863adc0e46cb459f3179 *data/ce11_all_REs.rda
b46b4533e4e592e7cc0597bfe1f20291 *data/ce11_proms.rda
cac0bfd6119f338832b1ef6be327ec99 *data/ce11_proms_seqs.rda
5d81e7f7de286ba62c5db1b190dda717 *data/datalist
1653420aeaed4f6fa0d5ce79d9d6afb1 *inst/doc/periodicDNA.R
a2186992e19857690ada53f9b20371aa *inst/doc/periodicDNA.Rmd
05278b4f05061dde8d6abc38555bf449 *inst/doc/periodicDNA.html
3467ec3b1770d757fa9a04f900b859c7 *man/ce11_ATACseq.Rd
d820c61fb9a2a2004c0c74663a2224aa *man/ce11_TSSs.Rd
f8119c223b645337f1f9960302500085 *man/ce11_WW_10bp.Rd
2019b396da54bbcbd45c3e2c02217199 *man/ce11_all_REs.Rd
040070be9ffde23c345c9ffc34696591 *man/ce11_proms.Rd
bccefb1226c6411bc3e11cbdffb5fcac *man/ce11_proms_seqs.Rd
84bffade14c470cddfecb07df423bc35 *man/figures/TT-10bp-periodicity_tissue-spe-TSSs.png
d63a6e1496003b57872f729963f24e10 *man/figures/TT_tissue-specific-classes.png
e5e2319c54bae37953f6213c93e49076 *man/figures/WW-TT-AA-10bp-periodicity_tissue-spe-TSSs.png
d63a6e1496003b57872f729963f24e10 *man/figures/WW_tissue-specific-classes.png
8af7c13ba37af8e11f14de66bca18f64 *man/figures/logo.png
de766222e9b1771edafe38c3fad5a2b0 *man/figures/periodicityDNA_principle.png
af49437e45d595af669aae18bde6c54e *man/figures/ubiquitous-promoters_TT-periodicity.png
e5503f4602b795fcd23c2117bc7c8d06 *man/getPeriodicity.Rd
147dffd064e82d2a059b8d1481947a02 *man/getPeriodicityTrack.Rd
fb9529a897f66950f8cf1696b4936428 *man/getPeriodicityWithIterations.Rd
797d815310ab0ea849189f686441038d *man/plotAggregateCoverage.Rd
fd8dcf7853f268c21068a17093c1bdf6 *man/plotPeriodicityResults.Rd
5068f839f04ce487b98cce1b84a77206 *man/setUpBPPARAM.Rd
76140e0c4599e3ffa6ace6ec28f6c8a2 *man/theme_ggplot2.Rd
5957ee2880801acc5191916f47773ef8 *tests/testthat.R
69b433b756fecd158826df08b8063e2d *tests/testthat/test-generateperiodicitytrack.R
9cfac125190cafc90f9436933463dcff *tests/testthat/test-getPeriodicity.R
53fcaab1fb8728a719dbfb9f6f45a471 *tests/testthat/test-utils.R
2e7484fd62567d2178416447ca2fa8ff *tests/testthat/test-withIterations.R
a2186992e19857690ada53f9b20371aa *vignettes/periodicDNA.Rmd
