6f3b9bbee48390c6c49c418f60af5ba2 *DESCRIPTION
df5a67d1656b0cb316f0e70e64d50eb8 *NAMESPACE
e4704a81756767fe90bc312ed446f84e *R/AnalysisStats.R
18898a0fe398038adf7594486d409123 *R/Comparison.R
6b0c6c721c52acab983974c2db9a6b9d *R/Data.R
6ce3c9f89f74428fd51b5fb9419993f1 *R/IO.R
ef9c738d09a9dc869b026a45929cfe2b *R/IO_view.R
9223dc7d2f1380864c91df774745980f *R/Input.R
48d233b8dfff3f086865d2b507f52a90 *R/Ippolito.R
2a9a98e471d2b75880726d421d508df0 *R/Output.R
d09001531114bdaad34f3e1ba813805e *R/Plots.R
a1eda250ce70d996c7e4e8c077f1ef4d *R/PrimerDesign.R
5a8ed0aaefbdda33df7a154ec6ecffce *R/PrimerEvaluation.R
db2c387a7acc644d340fe08c0ed1e1eb *R/RefCoverage.R
3c3528d217853553b234f35aaf1b8d6a *R/Scoring.R
4336f4d22268b1e06e8a5e29eb76de02 *R/SettingsDoc.R
8ec36554c7cba0ab5ec62d13c993f8e9 *R/TemplatesDoc.R
2b176f6837c2fa1080fc3f0088b50875 *R/Tiller.R
89ac14c280b405eb61d8ac4604e0a1f3 *R/ambiguity.R
f45efac175c892936273af426252f64f *R/check_stop_codons.R
9b917db408d8244508da008a1736c4b7 *R/con_annealing_temperature.R
3607131784c1390bfd4e3151700f4daf *R/con_dimerization.R
57df0371e1e7c81137f708a0e8c804b9 *R/con_gc_clamp.R
4dd189090f22eb5447cde56f79e111f8 *R/con_gc_ratio.R
709adc599bd6befd7f27f6140c5a7cd3 *R/con_melting_temperature.R
5c07cb12051e5ea3067d5f69d65eeb92 *R/con_primer_coverage.R
015bc25a46de1e4d998b64cc3a8f906f *R/con_primer_efficiency.R
2195470e2266f6969b62c255a6c14a02 *R/con_primer_secondary_structures.R
15f9a41da799afd5bce79449ae043e29 *R/con_repeats.R
e0348ff71d8dfc811a0f31d4b777939e *R/con_runs.R
00ef763c4aaaa0f164d8c377ea64ccd4 *R/con_template_secondary_structures.R
f0436cc55c3dfc339ef84ff31572540d *R/constraints.R
aa624891180b06f470ae8cdb63cc3970 *R/constraints_eval.R
98603e7e961e6659ef8cec4738c93bf6 *R/errors.R
532f9bdd6c1f9ee24b4256bcd059a5b8 *R/filters.R
2a254fa8552e651eb1626fca318c869d *R/helper_functions.R
618e2fdaa167676fd01426e822dc50bd *R/initialize_primers.R
e7d1a19d90ea34c4a522706eb469a198 *R/initialize_primers_tree.R
a8b4b748b7e0aef93e7b43ba470dc373 *R/openPrimeR.R
ada98549a44e206baaaea1fe999bc0bb *R/optimization_ILP.R
b2b87c390de3716b20c9b00cb8fcf8ac *R/optimization_algo.R
2a1892c05b93cf17229816d951815e41 *R/optimization_global.R
aedf83e395c3a8897dbb152ebcdd59a0 *R/optimization_greedy.R
035731d3a6076e7c1454ecef2800d47a *R/plots_comparison.R
c8ddecf017a6980229777e560f6113b0 *R/plots_constraints.R
4435a9cc1b8bbe637c05af7bd20cd841 *R/plots_coverage.R
6794d76430c83ed1279ac1886c992ba8 *R/plots_filtering.R
c0a987d0474ab2c60c9571f4b8e1d139 *R/primer_significance.R
93494acc533f3adba0decbe2984c2bce *R/primers.R
8dcfa58a5d571c9c325db004631be74c *R/settings.R
7e1c1ec884bde730d2d8aef84cc14963 *R/startApp.R
192701f692e61dcf52fa6f73daa56bbc *R/sysdata.rda
0974c8106f01ba222d9de6b18b949874 *R/templates.R
50f3e02379de329fd3916ea2fbf61dc2 *R/zzz.R
895e7a3176520a70880ebdd52a3314b3 *README.md
4d04eae9e325260f994540c0797cf328 *build/vignette.rds
ac6a2df82d19f533cfcfa879fa29ee10 *data-raw/Comparison.R
b7b0d05bf8a5ef77af62bd2822422fe4 *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000016_Marks1991.fasta
f7b81a14efa7aa4f5f702d6fabced873 *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000025_Glas1999.fasta
2cb28c040252c4cba063772e3b3134a4 *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000032_Persson1991.fasta
2ac37547b37d311e2c0f170f84682709 *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000046_Cardona1995.fasta
07540f272ffdcd2907f7aaf33ed4813f *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000067_vanEs1991.fasta
c529d88f273662792627824112c4bbe1 *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000069_Rubinstein1998.fasta
aaf747d924f7e4045e0f66615d37ad74 *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000081_vanEs1991_CDR.fasta
0f7883f7aad4f92650d8cf7d05f1b96f *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000089_Chong2002.fasta
d4d47eb51704194fa179256f8f8abadf *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000090_Weng1992.fasta
2853846da8f47c61e4375546ea873a5d *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000095_Glamann1998.fasta
29a81cb9378ea9d0cc6c415aa463f549 *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000098_Manheimer1991.fasta
fb8118044caf65c7cf5c41c340936572 *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000099_Verhagen2000.fasta
b1cb9ae67fced742c040581505538513 *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000157_Szczepa2001.fasta
8a93456abd41f67d60ed92ff55daf8c7 *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000200_vanDongen2003.fasta
bd6c43db88f266af20e5ba6612dc39b6 *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000201_vanDongen2003.fasta
18fbeb7f5bb752148c829e221bf451df *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000203_vanDongen2003.fasta
a4ac8bdb1c8be93eba3f5a2b336caf87 *data-raw/IMGT_data/IMGT_primers/IGHV/IPS000221_vanDongen2003.fasta
c1cc0f3920c46ae24a900c9df04bdaa1 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000022_Marks1991.fasta
e4b7c48c384f0b067e1ac9f3ce67c219 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000038_Persson1991.fasta
fb74ad81e27d39d215a5ea5d76dcc82c *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000043_Cardona1995.fasta
7c8c4f0db1e7b6d53a7b9308880c60fd *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000045_Atkinson1996.fasta
2efe997cc00fcbd24c64d6049efe12e4 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000049_Chen1986.fasta
4b0f99d9b603c2acee291cbb2f9cead4 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000062_Chen1987.fasta
4d50f68c655c717d39133d395ba9820b *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000063_Giachino1995.fasta
5fc2bb317ff0aa234ccd5522fb713b8a *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000072_vanEs1991.fasta
41c6d9db0f894b5c71b64d2f9dc0ebf4 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000078_Glamann1998.fasta
6018078b3c969e50c341fd25f633f8a3 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000085_Manheimer1991.fasta
c582b9f00a7e6f740249a7f1ea836062 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000088_Rubinstein1998.fasta
84c9cd1da69640e6acf9d79dcd2607a7 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000093_vanBurg2001.fasta
e1659d599c392c6b619939f392b5bd35 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000115_Pongers1999.fasta
315f20e5ce64e30f17853c5d7b79b53a *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000121_Cox1994.fasta
d471e0731449507124e460c5226f942f *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000122_Padyukov2001.fasta
8e35cdfafd704953e373f98369ea4fe7 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000126_Padyukov2001.fasta
fcb41d5622883ce34e23f3dd7ed3ec49 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000154_Juul1997.fasta
1d6755c17eeb8bee307b07c741c662ad *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000158_Huber1993.fasta
aa233c26c8a52090e0667630884919c9 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000160_Timmers1993.fasta
b894d336250d480e1ad888160511bdb7 *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000164_Beishuizen1997.fasta
e1b4547cc42fc8bd6e7c3ff27e07197f *data-raw/IMGT_data/IMGT_primers/IGKV/IPS000206_vanDongen2003.fasta
f500760e68feb999f16625d012642b59 *data-raw/IMGT_data/IMGT_primers/IGLV/IPS000024_Marks1991.fasta
e736f1fcbc309e68e2663a8680f9b5bc *data-raw/IMGT_data/IMGT_primers/IGLV/IPS000066_Cardona1995.fasta
51a457095c334ec733d0a077c2a96402 *data-raw/IMGT_data/IMGT_primers/IGLV/IPS000073_Stiernholm1994.fasta
c2af5519de6ff127e8af38273349659b *data-raw/IMGT_data/IMGT_primers/IGLV/IPS000083_Moraes2003.fasta
4e05d3fb5a0ae1545e61c144742417c1 *data-raw/IMGT_data/IMGT_primers/IGLV/IPS000114_vanBurg2001.fasta
c4f3f84290ec1749a3a6ebd34fcc61a1 *data-raw/IMGT_data/IMGT_primers/IGLV/IPS000145_Rubinstein1998.fasta
8e02177e38562d7ba07a64f8d861f004 *data-raw/IMGT_data/IMGT_primers/IGLV/IPS000208_vanDongen2003.fasta
c453ddc41bf3454de332467a8911d48e *data-raw/IMGT_data/IMGT_primers/IGLV/IPS000240_Farner1999_1st.fasta
5e25511325019934141725886a9ff387 *data-raw/IMGT_data/IMGT_primers/IGLV/IPS000241-251_Farner1999_2nd.fasta
baf4d46f0b1d19d6d0341afd74896818 *data-raw/IMGT_data/literature_primers/IGHV/Brezinschek1995_IGHV_1st.fasta
b800bb42a5d44b89b64bc2ccb37953bf *data-raw/IMGT_data/literature_primers/IGHV/Brezinschek1995_IGHV_2nd.fasta
212ea1e6c91cd2dd0cbbed46f36e9f69 *data-raw/IMGT_data/literature_primers/IGHV/Ippolito2012_IGHV.fasta
078454629c3a9c8d94a444a984cc5f16 *data-raw/IMGT_data/literature_primers/IGHV/Kueppers1993_IGHV_1st.fasta
48c5af93a7572bd8db37317ec3fc06ff *data-raw/IMGT_data/literature_primers/IGHV/Lim2010_IGHV.fasta
ca6f057478d3e0af92bf414fe3c161a2 *data-raw/IMGT_data/literature_primers/IGHV/Murugan2015_IGHV_1st.fasta
2e24e3d815042cd8b297c0b3ac173c4a *data-raw/IMGT_data/literature_primers/IGHV/Murugan2015_IGHV_2nd.fasta
498aacf2de3230a2ccf83fbbb2cff91e *data-raw/IMGT_data/literature_primers/IGHV/Sblattero1998_IGHV.fasta
8e91cd296e55a0e53cfe50b009b44560 *data-raw/IMGT_data/literature_primers/IGHV/Scheid2011_IGHV_1st.fasta
4de9f02c7a4bbf156620b1b06b577df8 *data-raw/IMGT_data/literature_primers/IGHV/Tiller2008_IGHV_1st.fasta
42ece1b2a8b8b9631ea5d8ba3ec900a6 *data-raw/IMGT_data/literature_primers/IGHV/Tiller2008_IGHV_2nd.fasta
b021e033a39840364069e7a174e3af1a *data-raw/IMGT_data/literature_primers/IGHV/Wardemann2003_IGHV_1st.fasta
b4059424937237a51e955a3a7a537be6 *data-raw/IMGT_data/literature_primers/IGHV/Wu2010_IGHV_1st.fasta
8adcca144a6b348d7a44e2c888b2b963 *data-raw/IMGT_data/literature_primers/IGKV/Ippolito2014_IGKV.fasta
ac60150eb8c6fcd2610890d6e8274e02 *data-raw/IMGT_data/literature_primers/IGKV/Kueppers1993_IGKV_1st.fasta
34cd4146698fb364f2a39096cfa116f5 *data-raw/IMGT_data/literature_primers/IGKV/Lim2010_IGKV.fasta
0a5d3acb4ff75d4f4e6ebdc5b10f8808 *data-raw/IMGT_data/literature_primers/IGKV/Murugan2015_IGKV_1st.fasta
7aec25d0da877f3d4fd3caf4ae709741 *data-raw/IMGT_data/literature_primers/IGKV/Murugan2015_IGKV_2nd.fasta
296cc5d76862ccb637281130e07938b8 *data-raw/IMGT_data/literature_primers/IGKV/Sblattero1998_IGKV.fasta
298ff628845779bb0e9411d6202a6592 *data-raw/IMGT_data/literature_primers/IGKV/Tiller2008_IGKV_1st.fasta
4265c4b2373a3339cad943a688930267 *data-raw/IMGT_data/literature_primers/IGKV/Wardemann2003_IGKV_1st.fasta
eb5b1eccb7253b92f01df3c32e26a80a *data-raw/IMGT_data/literature_primers/IGLV/Ippolito2014_IGLV.fasta
142ead7e56a3f4304dae652495b1021e *data-raw/IMGT_data/literature_primers/IGLV/Lim2010_IGLV.fasta
ec11dc693a21ac3d090aa64949307d18 *data-raw/IMGT_data/literature_primers/IGLV/Murugan2015_IGLV_1nd.fasta
eb52c05f77aceb48ee31feba7c77dacc *data-raw/IMGT_data/literature_primers/IGLV/Murugan2015_IGLV_1st.fasta
05a4264b9491abf60d850934afe32916 *data-raw/IMGT_data/literature_primers/IGLV/Sblattero1998_IGLV.fasta
0ed4d0c8a027fdc6b6109a699f4536c2 *data-raw/IMGT_data/literature_primers/IGLV/Tiller2008_IGLV_1st.fasta
ad133572c72ea38810cbfe10882e95eb *data-raw/IMGT_data/literature_primers/IGLV/Wardemann2003_IGLV_1st.fasta
49949f90cf01e4cf349f858b3fa1d3e0 *data-raw/IMGT_data/primers/IGHV/Brezinschek1995_1st.fasta
b800bb42a5d44b89b64bc2ccb37953bf *data-raw/IMGT_data/primers/IGHV/Brezinschek1995_2nd.fasta
2ac37547b37d311e2c0f170f84682709 *data-raw/IMGT_data/primers/IGHV/Cardona1995.fasta
0f7883f7aad4f92650d8cf7d05f1b96f *data-raw/IMGT_data/primers/IGHV/Chong2002.fasta
0b22906a760e6dbb5f721d22e310f024 *data-raw/IMGT_data/primers/IGHV/Glamann1998.fasta
f7b81a14efa7aa4f5f702d6fabced873 *data-raw/IMGT_data/primers/IGHV/Glas1999.fasta
db6366a6ee21827807695069749f4a87 *data-raw/IMGT_data/primers/IGHV/Ippolito2012.fasta
6ce4f52c7ff39fcb866310b9af59de08 *data-raw/IMGT_data/primers/IGHV/Kueppers1993.fasta
0e523294d65dcbb35547715c3a28f60f *data-raw/IMGT_data/primers/IGHV/Lim2010.fasta
29a81cb9378ea9d0cc6c415aa463f549 *data-raw/IMGT_data/primers/IGHV/Manheimer1991.fasta
b7b0d05bf8a5ef77af62bd2822422fe4 *data-raw/IMGT_data/primers/IGHV/Marks1991.fasta
170df565d978203e88f387061654bc03 *data-raw/IMGT_data/primers/IGHV/Murugan2015_1st.fasta
2e24e3d815042cd8b297c0b3ac173c4a *data-raw/IMGT_data/primers/IGHV/Murugan2015_2nd.fasta
dc09bbd7d3117a3ab329d5e7953cd61a *data-raw/IMGT_data/primers/IGHV/Persson1991.fasta
4e1322420fd54b25262d7e1db697e67c *data-raw/IMGT_data/primers/IGHV/Rubinstein1998.fasta
7bb2b0a96ddce406a0f4b5639ae97e3e *data-raw/IMGT_data/primers/IGHV/Sblattero1998.fasta
f83613177e8e37a2920db33892cb0481 *data-raw/IMGT_data/primers/IGHV/Scheid2011.fasta
b1cb9ae67fced742c040581505538513 *data-raw/IMGT_data/primers/IGHV/Szczepa2001.fasta
de1cc43db0aad956a893418366cf2ad0 *data-raw/IMGT_data/primers/IGHV/Tiller2008_1st.fasta
42ece1b2a8b8b9631ea5d8ba3ec900a6 *data-raw/IMGT_data/primers/IGHV/Tiller2008_2nd.fasta
fb8118044caf65c7cf5c41c340936572 *data-raw/IMGT_data/primers/IGHV/Verhagen2000.fasta
59c412c258f135f1af98e6bde7367d1a *data-raw/IMGT_data/primers/IGHV/Wardemann2003.fasta
d4d47eb51704194fa179256f8f8abadf *data-raw/IMGT_data/primers/IGHV/Weng1992.fasta
2813f9018e5ed98eacfcb4267675f1bd *data-raw/IMGT_data/primers/IGHV/Wu2010.fasta
2abb61e9e0083f48abb937e5534e6f13 *data-raw/IMGT_data/primers/IGHV/openPrimeR2017.fasta
8a93456abd41f67d60ed92ff55daf8c7 *data-raw/IMGT_data/primers/IGHV/vanDongen2003_A.fasta
bd6c43db88f266af20e5ba6612dc39b6 *data-raw/IMGT_data/primers/IGHV/vanDongen2003_B.fasta
18fbeb7f5bb752148c829e221bf451df *data-raw/IMGT_data/primers/IGHV/vanDongen2003_C.fasta
a4ac8bdb1c8be93eba3f5a2b336caf87 *data-raw/IMGT_data/primers/IGHV/vanDongen2003_single.fasta
7aadc86d33dfad670d530726427241b8 *data-raw/IMGT_data/primers/IGHV/vanEs1991.fasta
aaf747d924f7e4045e0f66615d37ad74 *data-raw/IMGT_data/primers/IGHV/vanEs1991_CDR.fasta
15d7c36b5e89f13193cc086c766725d2 *data-raw/IMGT_data/primers/IGKV/Atkinson1996.fasta
b894d336250d480e1ad888160511bdb7 *data-raw/IMGT_data/primers/IGKV/Beishuizen1997.fasta
fb74ad81e27d39d215a5ea5d76dcc82c *data-raw/IMGT_data/primers/IGKV/Cardona1995.fasta
2efe997cc00fcbd24c64d6049efe12e4 *data-raw/IMGT_data/primers/IGKV/Chen1986.fasta
4b0f99d9b603c2acee291cbb2f9cead4 *data-raw/IMGT_data/primers/IGKV/Chen1987.fasta
90546252f0e4e79f423ac2f8180ed8f8 *data-raw/IMGT_data/primers/IGKV/Cox1994.fasta
4d50f68c655c717d39133d395ba9820b *data-raw/IMGT_data/primers/IGKV/Giachino1995.fasta
f2f26c896188024b122441eccfc8fded *data-raw/IMGT_data/primers/IGKV/Glamann1998.fasta
1d6755c17eeb8bee307b07c741c662ad *data-raw/IMGT_data/primers/IGKV/Huber1993.fasta
b6ffab00a4155d489c9ad3d28bdb39a1 *data-raw/IMGT_data/primers/IGKV/Ippolito2012.fasta
7b0e606fd501157890a346f62efda91e *data-raw/IMGT_data/primers/IGKV/Juul1997.fasta
c955f9bc6b18a695adf0e8aa40d7aee1 *data-raw/IMGT_data/primers/IGKV/Kueppers1993.fasta
742caab38e91da5fb2ef4aa504372ebd *data-raw/IMGT_data/primers/IGKV/Lim2010.fasta
6018078b3c969e50c341fd25f633f8a3 *data-raw/IMGT_data/primers/IGKV/Manheimer1991.fasta
c1cc0f3920c46ae24a900c9df04bdaa1 *data-raw/IMGT_data/primers/IGKV/Marks1991.fasta
19a42df8af37b0861b96e87ab729c851 *data-raw/IMGT_data/primers/IGKV/Murugan2015_1st.fasta
7aec25d0da877f3d4fd3caf4ae709741 *data-raw/IMGT_data/primers/IGKV/Murugan2015_2nd.fasta
50988a4e4c209cb29bc28397e1f9d015 *data-raw/IMGT_data/primers/IGKV/Padyukov2001.fasta
5fee3149c14e322fe2772df5f0e3f80f *data-raw/IMGT_data/primers/IGKV/Persson1991.fasta
e1659d599c392c6b619939f392b5bd35 *data-raw/IMGT_data/primers/IGKV/Pongers1999.fasta
ccc48b0a70976c46dd5abafed531cfb0 *data-raw/IMGT_data/primers/IGKV/Rubinstein1998.fasta
99515028ac1da8a6a95ec5a9635d4d20 *data-raw/IMGT_data/primers/IGKV/Sblattero1998.fasta
63ab8a6302cbde222b894ab074f28a6c *data-raw/IMGT_data/primers/IGKV/Tiller2008.fasta
875d7d59fe84cbcf10e42f64233d56f7 *data-raw/IMGT_data/primers/IGKV/Timmers1993.fasta
678cac9d5666834c2025a2f9ba360331 *data-raw/IMGT_data/primers/IGKV/Wardemann2003.fasta
fd285120833e2411d0d69781992617dd *data-raw/IMGT_data/primers/IGKV/openPrimeR2017.fasta
84c9cd1da69640e6acf9d79dcd2607a7 *data-raw/IMGT_data/primers/IGKV/vanBurg2001.fasta
e1b4547cc42fc8bd6e7c3ff27e07197f *data-raw/IMGT_data/primers/IGKV/vanDongen2003.fasta
5fc2bb317ff0aa234ccd5522fb713b8a *data-raw/IMGT_data/primers/IGKV/vanEs1991.fasta
e736f1fcbc309e68e2663a8680f9b5bc *data-raw/IMGT_data/primers/IGLV/Cardona1995.fasta
c453ddc41bf3454de332467a8911d48e *data-raw/IMGT_data/primers/IGLV/Farner1999_1st.fasta
5e25511325019934141725886a9ff387 *data-raw/IMGT_data/primers/IGLV/Farner1999_2nd.fasta
c532ad9118d934b0edbde0ed9d4a65d9 *data-raw/IMGT_data/primers/IGLV/Ippolito2012.fasta
56a1d59d43973e3d07d3262d16aebbbf *data-raw/IMGT_data/primers/IGLV/Lim2010.fasta
f500760e68feb999f16625d012642b59 *data-raw/IMGT_data/primers/IGLV/Marks1991.fasta
6e25cb3af19e395bf0e8d16969cda1db *data-raw/IMGT_data/primers/IGLV/Moraes2003.fasta
48e4f8fb7c9a62c9a162252b3437c3dd *data-raw/IMGT_data/primers/IGLV/Murugan2015_1st.fasta
ec11dc693a21ac3d090aa64949307d18 *data-raw/IMGT_data/primers/IGLV/Murugan2015_2nd.fasta
0e7c05b611fe4c3165a33401f856255f *data-raw/IMGT_data/primers/IGLV/Rubinstein1998.fasta
aa0bdf00f84444014461f8abceb6d5dc *data-raw/IMGT_data/primers/IGLV/Sblattero1998.fasta
51a457095c334ec733d0a077c2a96402 *data-raw/IMGT_data/primers/IGLV/Stiernholm1994.fasta
035c07328499be7f9c03e26c95dc1133 *data-raw/IMGT_data/primers/IGLV/Tiller2008.fasta
d939836a4545c4c9d99a5378023ce7fa *data-raw/IMGT_data/primers/IGLV/Wardemann2003.fasta
6a1c24a5fee57eee00060d1bfe645039 *data-raw/IMGT_data/primers/IGLV/openPrimeR2017.fasta
4e05d3fb5a0ae1545e61c144742417c1 *data-raw/IMGT_data/primers/IGLV/vanBurg2001.fasta
8e02177e38562d7ba07a64f8d861f004 *data-raw/IMGT_data/primers/IGLV/vanDongen2003.fasta
0b22906a760e6dbb5f721d22e310f024 *data-raw/IMGT_data/primers_mod/IGH/Glamann1998.fasta
6ce4f52c7ff39fcb866310b9af59de08 *data-raw/IMGT_data/primers_mod/IGH/Kueppers1993.fasta
dc09bbd7d3117a3ab329d5e7953cd61a *data-raw/IMGT_data/primers_mod/IGH/Persson1991.fasta
4e1322420fd54b25262d7e1db697e67c *data-raw/IMGT_data/primers_mod/IGH/Rubinstein1998.fasta
7aadc86d33dfad670d530726427241b8 *data-raw/IMGT_data/primers_mod/IGH/vanEs1991.fasta
15d7c36b5e89f13193cc086c766725d2 *data-raw/IMGT_data/primers_mod/IGK/Atkinson1996.fasta
90546252f0e4e79f423ac2f8180ed8f8 *data-raw/IMGT_data/primers_mod/IGK/Cox1994.fasta
f2f26c896188024b122441eccfc8fded *data-raw/IMGT_data/primers_mod/IGK/Glamann1998.fasta
7b0e606fd501157890a346f62efda91e *data-raw/IMGT_data/primers_mod/IGK/Juul1997.fasta
c955f9bc6b18a695adf0e8aa40d7aee1 *data-raw/IMGT_data/primers_mod/IGK/Kueppers1993.fasta
50988a4e4c209cb29bc28397e1f9d015 *data-raw/IMGT_data/primers_mod/IGK/Padyukov2001.fasta
5fee3149c14e322fe2772df5f0e3f80f *data-raw/IMGT_data/primers_mod/IGK/Persson1991.fasta
ccc48b0a70976c46dd5abafed531cfb0 *data-raw/IMGT_data/primers_mod/IGK/Rubinstein1998.fasta
875d7d59fe84cbcf10e42f64233d56f7 *data-raw/IMGT_data/primers_mod/IGK/Timmers1993.fasta
6e25cb3af19e395bf0e8d16969cda1db *data-raw/IMGT_data/primers_mod/IGL/Moraes2003.fasta
0e7c05b611fe4c3165a33401f856255f *data-raw/IMGT_data/primers_mod/IGL/Rubinstein1998.fasta
1cf4a3a9a4638c3202902128a1cdb309 *data-raw/IMGT_data/primers_mod/adaptor_info.txt
baf4d46f0b1d19d6d0341afd74896818 *data-raw/IMGT_data/primers_raw/IGHV/Brezinschek1995_IGHV_1st.fasta
b800bb42a5d44b89b64bc2ccb37953bf *data-raw/IMGT_data/primers_raw/IGHV/Brezinschek1995_IGHV_2nd.fasta
b7b0d05bf8a5ef77af62bd2822422fe4 *data-raw/IMGT_data/primers_raw/IGHV/IPS000016_Marks1991.fasta
f7b81a14efa7aa4f5f702d6fabced873 *data-raw/IMGT_data/primers_raw/IGHV/IPS000025_Glas1999.fasta
2cb28c040252c4cba063772e3b3134a4 *data-raw/IMGT_data/primers_raw/IGHV/IPS000032_Persson1991.fasta
2ac37547b37d311e2c0f170f84682709 *data-raw/IMGT_data/primers_raw/IGHV/IPS000046_Cardona1995.fasta
07540f272ffdcd2907f7aaf33ed4813f *data-raw/IMGT_data/primers_raw/IGHV/IPS000067_vanEs1991.fasta
c529d88f273662792627824112c4bbe1 *data-raw/IMGT_data/primers_raw/IGHV/IPS000069_Rubinstein1998.fasta
aaf747d924f7e4045e0f66615d37ad74 *data-raw/IMGT_data/primers_raw/IGHV/IPS000081_vanEs1991_CDR.fasta
0f7883f7aad4f92650d8cf7d05f1b96f *data-raw/IMGT_data/primers_raw/IGHV/IPS000089_Chong2002.fasta
d4d47eb51704194fa179256f8f8abadf *data-raw/IMGT_data/primers_raw/IGHV/IPS000090_Weng1992.fasta
2853846da8f47c61e4375546ea873a5d *data-raw/IMGT_data/primers_raw/IGHV/IPS000095_Glamann1998.fasta
29a81cb9378ea9d0cc6c415aa463f549 *data-raw/IMGT_data/primers_raw/IGHV/IPS000098_Manheimer1991.fasta
fb8118044caf65c7cf5c41c340936572 *data-raw/IMGT_data/primers_raw/IGHV/IPS000099_Verhagen2000.fasta
b1cb9ae67fced742c040581505538513 *data-raw/IMGT_data/primers_raw/IGHV/IPS000157_Szczepa2001.fasta
8a93456abd41f67d60ed92ff55daf8c7 *data-raw/IMGT_data/primers_raw/IGHV/IPS000200_vanDongen2003.fasta
bd6c43db88f266af20e5ba6612dc39b6 *data-raw/IMGT_data/primers_raw/IGHV/IPS000201_vanDongen2003.fasta
18fbeb7f5bb752148c829e221bf451df *data-raw/IMGT_data/primers_raw/IGHV/IPS000203_vanDongen2003.fasta
a4ac8bdb1c8be93eba3f5a2b336caf87 *data-raw/IMGT_data/primers_raw/IGHV/IPS000221_vanDongen2003.fasta
212ea1e6c91cd2dd0cbbed46f36e9f69 *data-raw/IMGT_data/primers_raw/IGHV/Ippolito2012_IGHV.fasta
078454629c3a9c8d94a444a984cc5f16 *data-raw/IMGT_data/primers_raw/IGHV/Kueppers1993_IGHV_1st.fasta
48c5af93a7572bd8db37317ec3fc06ff *data-raw/IMGT_data/primers_raw/IGHV/Lim2010_IGHV.fasta
ca6f057478d3e0af92bf414fe3c161a2 *data-raw/IMGT_data/primers_raw/IGHV/Murugan2015_IGHV_1st.fasta
2e24e3d815042cd8b297c0b3ac173c4a *data-raw/IMGT_data/primers_raw/IGHV/Murugan2015_IGHV_2nd.fasta
498aacf2de3230a2ccf83fbbb2cff91e *data-raw/IMGT_data/primers_raw/IGHV/Sblattero1998_IGHV.fasta
8e91cd296e55a0e53cfe50b009b44560 *data-raw/IMGT_data/primers_raw/IGHV/Scheid2011_IGHV_1st.fasta
4de9f02c7a4bbf156620b1b06b577df8 *data-raw/IMGT_data/primers_raw/IGHV/Tiller2008_IGHV_1st.fasta
42ece1b2a8b8b9631ea5d8ba3ec900a6 *data-raw/IMGT_data/primers_raw/IGHV/Tiller2008_IGHV_2nd.fasta
b021e033a39840364069e7a174e3af1a *data-raw/IMGT_data/primers_raw/IGHV/Wardemann2003_IGHV_1st.fasta
b4059424937237a51e955a3a7a537be6 *data-raw/IMGT_data/primers_raw/IGHV/Wu2010_IGHV_1st.fasta
c1cc0f3920c46ae24a900c9df04bdaa1 *data-raw/IMGT_data/primers_raw/IGKV/IPS000022_Marks1991.fasta
e4b7c48c384f0b067e1ac9f3ce67c219 *data-raw/IMGT_data/primers_raw/IGKV/IPS000038_Persson1991.fasta
fb74ad81e27d39d215a5ea5d76dcc82c *data-raw/IMGT_data/primers_raw/IGKV/IPS000043_Cardona1995.fasta
7c8c4f0db1e7b6d53a7b9308880c60fd *data-raw/IMGT_data/primers_raw/IGKV/IPS000045_Atkinson1996.fasta
2efe997cc00fcbd24c64d6049efe12e4 *data-raw/IMGT_data/primers_raw/IGKV/IPS000049_Chen1986.fasta
4b0f99d9b603c2acee291cbb2f9cead4 *data-raw/IMGT_data/primers_raw/IGKV/IPS000062_Chen1987.fasta
728340a097e01a76eb4a5785f58643bd *data-raw/IMGT_data/primers_raw/IGKV/IPS000063_Giachino1995.fasta
5fc2bb317ff0aa234ccd5522fb713b8a *data-raw/IMGT_data/primers_raw/IGKV/IPS000072_vanEs1991.fasta
41c6d9db0f894b5c71b64d2f9dc0ebf4 *data-raw/IMGT_data/primers_raw/IGKV/IPS000078_Glamann1998.fasta
6018078b3c969e50c341fd25f633f8a3 *data-raw/IMGT_data/primers_raw/IGKV/IPS000085_Manheimer1991.fasta
c582b9f00a7e6f740249a7f1ea836062 *data-raw/IMGT_data/primers_raw/IGKV/IPS000088_Rubinstein1998.fasta
84c9cd1da69640e6acf9d79dcd2607a7 *data-raw/IMGT_data/primers_raw/IGKV/IPS000093_vanBurg2001.fasta
e1659d599c392c6b619939f392b5bd35 *data-raw/IMGT_data/primers_raw/IGKV/IPS000115_Pongers1999.fasta
315f20e5ce64e30f17853c5d7b79b53a *data-raw/IMGT_data/primers_raw/IGKV/IPS000121_Cox1994.fasta
d471e0731449507124e460c5226f942f *data-raw/IMGT_data/primers_raw/IGKV/IPS000122_Padyukov2001.fasta
8e35cdfafd704953e373f98369ea4fe7 *data-raw/IMGT_data/primers_raw/IGKV/IPS000126_Padyukov2001.fasta
fcb41d5622883ce34e23f3dd7ed3ec49 *data-raw/IMGT_data/primers_raw/IGKV/IPS000154_Juul1997.fasta
1d6755c17eeb8bee307b07c741c662ad *data-raw/IMGT_data/primers_raw/IGKV/IPS000158_Huber1993.fasta
aa233c26c8a52090e0667630884919c9 *data-raw/IMGT_data/primers_raw/IGKV/IPS000160_Timmers1993.fasta
b894d336250d480e1ad888160511bdb7 *data-raw/IMGT_data/primers_raw/IGKV/IPS000164_Beishuizen1997.fasta
e1b4547cc42fc8bd6e7c3ff27e07197f *data-raw/IMGT_data/primers_raw/IGKV/IPS000206_vanDongen2003.fasta
8adcca144a6b348d7a44e2c888b2b963 *data-raw/IMGT_data/primers_raw/IGKV/Ippolito2014_IGKV.fasta
ac60150eb8c6fcd2610890d6e8274e02 *data-raw/IMGT_data/primers_raw/IGKV/Kueppers1993_IGKV_1st.fasta
34cd4146698fb364f2a39096cfa116f5 *data-raw/IMGT_data/primers_raw/IGKV/Lim2010_IGKV.fasta
0a5d3acb4ff75d4f4e6ebdc5b10f8808 *data-raw/IMGT_data/primers_raw/IGKV/Murugan2015_IGKV_1st.fasta
7aec25d0da877f3d4fd3caf4ae709741 *data-raw/IMGT_data/primers_raw/IGKV/Murugan2015_IGKV_2nd.fasta
296cc5d76862ccb637281130e07938b8 *data-raw/IMGT_data/primers_raw/IGKV/Sblattero1998_IGKV.fasta
298ff628845779bb0e9411d6202a6592 *data-raw/IMGT_data/primers_raw/IGKV/Tiller2008_IGKV_1st.fasta
4265c4b2373a3339cad943a688930267 *data-raw/IMGT_data/primers_raw/IGKV/Wardemann2003_IGKV_1st.fasta
f500760e68feb999f16625d012642b59 *data-raw/IMGT_data/primers_raw/IGLV/IPS000024_Marks1991.fasta
e736f1fcbc309e68e2663a8680f9b5bc *data-raw/IMGT_data/primers_raw/IGLV/IPS000066_Cardona1995.fasta
51a457095c334ec733d0a077c2a96402 *data-raw/IMGT_data/primers_raw/IGLV/IPS000073_Stiernholm1994.fasta
c2af5519de6ff127e8af38273349659b *data-raw/IMGT_data/primers_raw/IGLV/IPS000083_Moraes2003.fasta
4e05d3fb5a0ae1545e61c144742417c1 *data-raw/IMGT_data/primers_raw/IGLV/IPS000114_vanBurg2001.fasta
c4f3f84290ec1749a3a6ebd34fcc61a1 *data-raw/IMGT_data/primers_raw/IGLV/IPS000145_Rubinstein1998.fasta
8e02177e38562d7ba07a64f8d861f004 *data-raw/IMGT_data/primers_raw/IGLV/IPS000208_vanDongen2003.fasta
c453ddc41bf3454de332467a8911d48e *data-raw/IMGT_data/primers_raw/IGLV/IPS000240_Farner1999_1st.fasta
5e25511325019934141725886a9ff387 *data-raw/IMGT_data/primers_raw/IGLV/IPS000241-251_Farner1999_2nd.fasta
eb5b1eccb7253b92f01df3c32e26a80a *data-raw/IMGT_data/primers_raw/IGLV/Ippolito2014_IGLV.fasta
142ead7e56a3f4304dae652495b1021e *data-raw/IMGT_data/primers_raw/IGLV/Lim2010_IGLV.fasta
ec11dc693a21ac3d090aa64949307d18 *data-raw/IMGT_data/primers_raw/IGLV/Murugan2015_IGLV_1nd.fasta
eb52c05f77aceb48ee31feba7c77dacc *data-raw/IMGT_data/primers_raw/IGLV/Murugan2015_IGLV_1st.fasta
05a4264b9491abf60d850934afe32916 *data-raw/IMGT_data/primers_raw/IGLV/Sblattero1998_IGLV.fasta
0ed4d0c8a027fdc6b6109a699f4536c2 *data-raw/IMGT_data/primers_raw/IGLV/Tiller2008_IGLV_1st.fasta
ad133572c72ea38810cbfe10882e95eb *data-raw/IMGT_data/primers_raw/IGLV/Wardemann2003_IGLV_1st.fasta
140462f905fa9dd371bf943b945b3746 *data-raw/IMGT_primer_set_extractor.py
d0f4e8ef28ebd9ac8782d4c701c31042 *data-raw/Ippolito.R
7562d690d07a7aba60842c80e30d22b6 *data-raw/PCR_ref_data.xlsx
ac467c1d516e06ad2bff092ff14990b2 *data-raw/RefCoverage.R
482e1eb2ecc85ec51fb819c050cf7c87 *data-raw/Tiller.R
446b0078a9705e82c444c08da44e7865 *data-raw/common_restriction_sites.txt
c81583d994131da9993d5c6b2c7a93ed *data-raw/sysdata.R
8c685a238084eefcbcfb8837c9a84d23 *data/Comparison.rda
747fc2c1428b01ed25431f3ed76a5c2f *data/Ippolito.rda
6eee685707ada25f2c811cc250abd504 *data/RefCoverage.rda
3a3c6189fe070ee6cee6f18da314461d *data/Tiller.rda
4cd02b99af5dcea5ac8b48cd49783755 *inst/CITATION
3664bd3fc4a6b096cb45bdd9bcfe5b9d *inst/NEWS
5d809efd469ed8c29c95fffc16e153de *inst/doc/openPrimeR_vignette.R
18028543eb174131cfef6a8c61f0abc4 *inst/doc/openPrimeR_vignette.Rmd
3ed14f49457e494eb33bb60f7d0cc126 *inst/doc/openPrimeR_vignette.html
fe2c8c67b127f6a1dde88c797a79c8c5 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Brezinschek1995_1st.csv
abd7e35bc6de8091c4a788815a4283e2 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Brezinschek1995_2nd.csv
13fb42e22d2645d69ce407bb2cae4291 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Cardona1995.csv
e0b2856675a546c1b74336d319e98f34 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Chong2002.csv
98733f708b70c6d1e6926401a34db46f *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Glamann1998.csv
26aa3cccdd1c9839735d95b5bb0b8e32 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Glas1999.csv
084cdfd334688ac675f9a878daaaaa1e *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Ippolito2012.csv
fcf45987057cb472e797b15412e764c2 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Kueppers1993.csv
3e5ace04e208adf76ccc0ab49599e40e *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Lim2010.csv
be6bab16761683327fe4d480b01f4c20 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Manheimer1991.csv
7e31e9eb0d24b0de1a94d25a010b1187 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Marks1991.csv
763955e913d1edca7edb568895530280 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Murugan2015_1st.csv
f09a4b47c1fa2c77c397c8f9efc25298 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Murugan2015_2nd.csv
d93a8221a73862a10a6238b6aa3360ab *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Persson1991.csv
00205d51f9bc342377141f282b9157bc *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Rubinstein1998.csv
a104b074b2d02407fc23f00922b2ac7d *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Sblattero1998.csv
5895cf68a0b9d97c5f2a5556094eb2eb *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Scheid2011.csv
91233905ef385a2638fa45cc6d03544c *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Szczepa2001.csv
139e234fc5666849809e7d3ddcffe34f *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Tiller2008_1st.csv
cd3dd4702482d5a5f3e1bffbd1a6123d *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Tiller2008_2nd.csv
06f022c0d4b7cba6438ef272e76ba333 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Verhagen2000.csv
3dba80370f512c5e89d0d8335a4ba737 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Wardemann2003.csv
5d7262daaf7ab033ad997b446f01a0c8 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Weng1992.csv
9ae022a08e4f413a183cb9c17be00fdb *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Wu2010.csv
8798dce12d14e6913e7708f35a60056c *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_openPrimeR2017.csv
ed236559f2aa69ce5599da2861568e00 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_vanDongen2003_A.csv
af6de6199155ba67d56a460019b1c76a *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_vanDongen2003_B.csv
478a993971926c530a62f2a3cd81d3db *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_vanDongen2003_C.csv
6a4c5aad61c772995af30093b77697cc *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_vanDongen2003_single.csv
d1ff3368c892c2313c2cb01c41a5ac82 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_vanEs1991.csv
b51b7c74474544de753da63c7c8fc477 *inst/extdata/IMGT_data/comparison/primer_sets/IGH/IGH_vanEs1991_CDR.csv
3875a2ae22d936a02b33f8cc4aa0eb57 *inst/extdata/IMGT_data/comparison/primer_sets/IGH_templates.csv
34052409d76bf478998baab6947b0416 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Atkinson1996.csv
398d93c4e2f4c30f374292e34880bc96 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Beishuizen1997.csv
4ec1768445497177e7eab2f18c7ddfeb *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Cardona1995.csv
cca4206e18752ce64330afb68a97bfc4 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Chen1986.csv
4ccd9b22e42e109386710b104b3f2a94 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Chen1987.csv
8d7dcd82d7300aa366e537b24893b5cc *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Cox1994.csv
91624b01f769fe88326cd369fa1e2506 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Giachino1995.csv
24b94db365807854b8c85033f54ca715 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Glamann1998.csv
f59d4b69a5fbb088480f0e9680bab47d *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Huber1993.csv
f67290bda35c8c848461e616d8160cfc *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Ippolito2012.csv
7c54c6e566f2a49a752679639505c07e *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Juul1997.csv
6e9143e429c4cf6b7e497f704bee95bd *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Kueppers1993.csv
8a9637060b6064827490eae92d3a0ed5 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Lim2010.csv
1c475e572df3708d7eeec36c8105ecb8 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Manheimer1991.csv
9a32dad840d0dbd346bf4ccd6418334d *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Marks1991.csv
02772951c99464d78a61cddab6c89ac7 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Murugan2015_1st.csv
c4f66a821f860b49cc2f852cce8b9a88 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Murugan2015_2nd.csv
4e46454eb68bdb5bca1ee7a99386960b *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Padyukov2001.csv
f5861608beb5df7dad122e54b8c8ede5 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Persson1991.csv
66f75dfea6001b9674eef0b9004e7e35 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Pongers1999.csv
19a7d24eff9bcc4a3af4da48fdc0e245 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Rubinstein1998.csv
ff7d2f01fa12914cf57e2a51b9aff508 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Sblattero1998.csv
0dd672d533b67147e2d953286f8244f5 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Tiller2008.csv
b4d407ada8585eae2484339577114916 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Timmers1993.csv
08067b1bf417a2cd52cdb1481fc784e6 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Wardemann2003.csv
267a06bcec18222c5026dd5d8eca7b3e *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_openPrimeR2017.csv
60a5e203c324bfaee112367cf491e5fd *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_vanBurg2001.csv
4abd60a0f9be7667c4b96b7b5f46885a *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_vanDongen2003.csv
0ce2b56cbd14503829f8633573c78ef4 *inst/extdata/IMGT_data/comparison/primer_sets/IGK/IGK_vanEs1991.csv
7fa015b9ea330fad3f8d2ee1ee272b95 *inst/extdata/IMGT_data/comparison/primer_sets/IGK_templates.csv
255ed00f177bcc5f9753bd1d492fff8e *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Cardona1995.csv
eb0edac950e1826ae79271f58d1b96d0 *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Farner1999_1st.csv
e3a18af6dfd82a0f2bcad34b25f784c8 *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Farner1999_2nd.csv
ab9156e2f29a0e9ed45935a8789847b9 *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Ippolito2012.csv
0187fcfaee4633836f650811ba185924 *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Lim2010.csv
1414529ab6e9269f5c479f945790aca9 *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Marks1991.csv
24ed21a65226ffcf123ea81e2f48f30c *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Moraes2003.csv
9a36336bd50ae1712b5aefab24e833e7 *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Murugan2015_1st.csv
f6a34e865b7a0e5ee757b7da14e63f57 *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Murugan2015_2nd.csv
b92eae718284f6d37d23bb4494df56e7 *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Rubinstein1998.csv
332da3d3560e6aa81c043d2f979227b5 *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Sblattero1998.csv
0aefae019c0802c100c79fffe3a6ef49 *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Stiernholm1994.csv
73869a2bcc769511b80c1b804b22d0bb *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Tiller2008.csv
8fb30d13d0dd65e33e900159223b5869 *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Wardemann2003.csv
1e7b3db032f33560fc392b1cce768cfa *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_openPrimeR2017.csv
a071b9ef7128e2f17fa78cf3a97ac77d *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_vanBurg2001.csv
7f51d205a03c3ca44470246fb2af9afa *inst/extdata/IMGT_data/comparison/primer_sets/IGL/IGL_vanDongen2003.csv
4d8cc0a87b19e0e363505f154811e578 *inst/extdata/IMGT_data/comparison/primer_sets/IGL_templates.csv
6b37c14b187880947f31ee2828887739 *inst/extdata/IMGT_data/comparison/templates/IGH_templates.csv
12cede4200079e58797a7c83ed49e00e *inst/extdata/IMGT_data/comparison/templates/IGK_templates.csv
854d73977e807a8e67bcf31207d52210 *inst/extdata/IMGT_data/comparison/templates/IGL_templates.csv
49949f90cf01e4cf349f858b3fa1d3e0 *inst/extdata/IMGT_data/primers/IGHV/Brezinschek1995_1st.fasta
b800bb42a5d44b89b64bc2ccb37953bf *inst/extdata/IMGT_data/primers/IGHV/Brezinschek1995_2nd.fasta
2ac37547b37d311e2c0f170f84682709 *inst/extdata/IMGT_data/primers/IGHV/Cardona1995.fasta
0f7883f7aad4f92650d8cf7d05f1b96f *inst/extdata/IMGT_data/primers/IGHV/Chong2002.fasta
0b22906a760e6dbb5f721d22e310f024 *inst/extdata/IMGT_data/primers/IGHV/Glamann1998.fasta
f7b81a14efa7aa4f5f702d6fabced873 *inst/extdata/IMGT_data/primers/IGHV/Glas1999.fasta
db6366a6ee21827807695069749f4a87 *inst/extdata/IMGT_data/primers/IGHV/Ippolito2012.fasta
6ce4f52c7ff39fcb866310b9af59de08 *inst/extdata/IMGT_data/primers/IGHV/Kueppers1993.fasta
0e523294d65dcbb35547715c3a28f60f *inst/extdata/IMGT_data/primers/IGHV/Lim2010.fasta
29a81cb9378ea9d0cc6c415aa463f549 *inst/extdata/IMGT_data/primers/IGHV/Manheimer1991.fasta
b7b0d05bf8a5ef77af62bd2822422fe4 *inst/extdata/IMGT_data/primers/IGHV/Marks1991.fasta
170df565d978203e88f387061654bc03 *inst/extdata/IMGT_data/primers/IGHV/Murugan2015_1st.fasta
2e24e3d815042cd8b297c0b3ac173c4a *inst/extdata/IMGT_data/primers/IGHV/Murugan2015_2nd.fasta
dc09bbd7d3117a3ab329d5e7953cd61a *inst/extdata/IMGT_data/primers/IGHV/Persson1991.fasta
4e1322420fd54b25262d7e1db697e67c *inst/extdata/IMGT_data/primers/IGHV/Rubinstein1998.fasta
7bb2b0a96ddce406a0f4b5639ae97e3e *inst/extdata/IMGT_data/primers/IGHV/Sblattero1998.fasta
f83613177e8e37a2920db33892cb0481 *inst/extdata/IMGT_data/primers/IGHV/Scheid2011.fasta
b1cb9ae67fced742c040581505538513 *inst/extdata/IMGT_data/primers/IGHV/Szczepa2001.fasta
de1cc43db0aad956a893418366cf2ad0 *inst/extdata/IMGT_data/primers/IGHV/Tiller2008_1st.fasta
42ece1b2a8b8b9631ea5d8ba3ec900a6 *inst/extdata/IMGT_data/primers/IGHV/Tiller2008_2nd.fasta
fb8118044caf65c7cf5c41c340936572 *inst/extdata/IMGT_data/primers/IGHV/Verhagen2000.fasta
59c412c258f135f1af98e6bde7367d1a *inst/extdata/IMGT_data/primers/IGHV/Wardemann2003.fasta
d4d47eb51704194fa179256f8f8abadf *inst/extdata/IMGT_data/primers/IGHV/Weng1992.fasta
2813f9018e5ed98eacfcb4267675f1bd *inst/extdata/IMGT_data/primers/IGHV/Wu2010.fasta
2abb61e9e0083f48abb937e5534e6f13 *inst/extdata/IMGT_data/primers/IGHV/openPrimeR2017.fasta
8a93456abd41f67d60ed92ff55daf8c7 *inst/extdata/IMGT_data/primers/IGHV/vanDongen2003_A.fasta
bd6c43db88f266af20e5ba6612dc39b6 *inst/extdata/IMGT_data/primers/IGHV/vanDongen2003_B.fasta
18fbeb7f5bb752148c829e221bf451df *inst/extdata/IMGT_data/primers/IGHV/vanDongen2003_C.fasta
a4ac8bdb1c8be93eba3f5a2b336caf87 *inst/extdata/IMGT_data/primers/IGHV/vanDongen2003_single.fasta
7aadc86d33dfad670d530726427241b8 *inst/extdata/IMGT_data/primers/IGHV/vanEs1991.fasta
aaf747d924f7e4045e0f66615d37ad74 *inst/extdata/IMGT_data/primers/IGHV/vanEs1991_CDR.fasta
15d7c36b5e89f13193cc086c766725d2 *inst/extdata/IMGT_data/primers/IGKV/Atkinson1996.fasta
b894d336250d480e1ad888160511bdb7 *inst/extdata/IMGT_data/primers/IGKV/Beishuizen1997.fasta
fb74ad81e27d39d215a5ea5d76dcc82c *inst/extdata/IMGT_data/primers/IGKV/Cardona1995.fasta
2efe997cc00fcbd24c64d6049efe12e4 *inst/extdata/IMGT_data/primers/IGKV/Chen1986.fasta
4b0f99d9b603c2acee291cbb2f9cead4 *inst/extdata/IMGT_data/primers/IGKV/Chen1987.fasta
90546252f0e4e79f423ac2f8180ed8f8 *inst/extdata/IMGT_data/primers/IGKV/Cox1994.fasta
4d50f68c655c717d39133d395ba9820b *inst/extdata/IMGT_data/primers/IGKV/Giachino1995.fasta
f2f26c896188024b122441eccfc8fded *inst/extdata/IMGT_data/primers/IGKV/Glamann1998.fasta
1d6755c17eeb8bee307b07c741c662ad *inst/extdata/IMGT_data/primers/IGKV/Huber1993.fasta
b6ffab00a4155d489c9ad3d28bdb39a1 *inst/extdata/IMGT_data/primers/IGKV/Ippolito2012.fasta
7b0e606fd501157890a346f62efda91e *inst/extdata/IMGT_data/primers/IGKV/Juul1997.fasta
c955f9bc6b18a695adf0e8aa40d7aee1 *inst/extdata/IMGT_data/primers/IGKV/Kueppers1993.fasta
742caab38e91da5fb2ef4aa504372ebd *inst/extdata/IMGT_data/primers/IGKV/Lim2010.fasta
6018078b3c969e50c341fd25f633f8a3 *inst/extdata/IMGT_data/primers/IGKV/Manheimer1991.fasta
c1cc0f3920c46ae24a900c9df04bdaa1 *inst/extdata/IMGT_data/primers/IGKV/Marks1991.fasta
19a42df8af37b0861b96e87ab729c851 *inst/extdata/IMGT_data/primers/IGKV/Murugan2015_1st.fasta
7aec25d0da877f3d4fd3caf4ae709741 *inst/extdata/IMGT_data/primers/IGKV/Murugan2015_2nd.fasta
50988a4e4c209cb29bc28397e1f9d015 *inst/extdata/IMGT_data/primers/IGKV/Padyukov2001.fasta
5fee3149c14e322fe2772df5f0e3f80f *inst/extdata/IMGT_data/primers/IGKV/Persson1991.fasta
e1659d599c392c6b619939f392b5bd35 *inst/extdata/IMGT_data/primers/IGKV/Pongers1999.fasta
ccc48b0a70976c46dd5abafed531cfb0 *inst/extdata/IMGT_data/primers/IGKV/Rubinstein1998.fasta
99515028ac1da8a6a95ec5a9635d4d20 *inst/extdata/IMGT_data/primers/IGKV/Sblattero1998.fasta
63ab8a6302cbde222b894ab074f28a6c *inst/extdata/IMGT_data/primers/IGKV/Tiller2008.fasta
875d7d59fe84cbcf10e42f64233d56f7 *inst/extdata/IMGT_data/primers/IGKV/Timmers1993.fasta
678cac9d5666834c2025a2f9ba360331 *inst/extdata/IMGT_data/primers/IGKV/Wardemann2003.fasta
fd285120833e2411d0d69781992617dd *inst/extdata/IMGT_data/primers/IGKV/openPrimeR2017.fasta
84c9cd1da69640e6acf9d79dcd2607a7 *inst/extdata/IMGT_data/primers/IGKV/vanBurg2001.fasta
e1b4547cc42fc8bd6e7c3ff27e07197f *inst/extdata/IMGT_data/primers/IGKV/vanDongen2003.fasta
5fc2bb317ff0aa234ccd5522fb713b8a *inst/extdata/IMGT_data/primers/IGKV/vanEs1991.fasta
e736f1fcbc309e68e2663a8680f9b5bc *inst/extdata/IMGT_data/primers/IGLV/Cardona1995.fasta
c453ddc41bf3454de332467a8911d48e *inst/extdata/IMGT_data/primers/IGLV/Farner1999_1st.fasta
5e25511325019934141725886a9ff387 *inst/extdata/IMGT_data/primers/IGLV/Farner1999_2nd.fasta
c532ad9118d934b0edbde0ed9d4a65d9 *inst/extdata/IMGT_data/primers/IGLV/Ippolito2012.fasta
56a1d59d43973e3d07d3262d16aebbbf *inst/extdata/IMGT_data/primers/IGLV/Lim2010.fasta
f500760e68feb999f16625d012642b59 *inst/extdata/IMGT_data/primers/IGLV/Marks1991.fasta
6e25cb3af19e395bf0e8d16969cda1db *inst/extdata/IMGT_data/primers/IGLV/Moraes2003.fasta
48e4f8fb7c9a62c9a162252b3437c3dd *inst/extdata/IMGT_data/primers/IGLV/Murugan2015_1st.fasta
ec11dc693a21ac3d090aa64949307d18 *inst/extdata/IMGT_data/primers/IGLV/Murugan2015_2nd.fasta
0e7c05b611fe4c3165a33401f856255f *inst/extdata/IMGT_data/primers/IGLV/Rubinstein1998.fasta
aa0bdf00f84444014461f8abceb6d5dc *inst/extdata/IMGT_data/primers/IGLV/Sblattero1998.fasta
51a457095c334ec733d0a077c2a96402 *inst/extdata/IMGT_data/primers/IGLV/Stiernholm1994.fasta
035c07328499be7f9c03e26c95dc1133 *inst/extdata/IMGT_data/primers/IGLV/Tiller2008.fasta
d939836a4545c4c9d99a5378023ce7fa *inst/extdata/IMGT_data/primers/IGLV/Wardemann2003.fasta
6a1c24a5fee57eee00060d1bfe645039 *inst/extdata/IMGT_data/primers/IGLV/openPrimeR2017.fasta
4e05d3fb5a0ae1545e61c144742417c1 *inst/extdata/IMGT_data/primers/IGLV/vanBurg2001.fasta
8e02177e38562d7ba07a64f8d861f004 *inst/extdata/IMGT_data/primers/IGLV/vanDongen2003.fasta
6e20be15524eb8d6386f8958c92347d0 *inst/extdata/IMGT_data/primers/Test/test_both.fasta
acaf8048342b9b3e3d4f0995f77a4b86 *inst/extdata/IMGT_data/templates/Homo_sapiens_IGH_any_exon.fasta
0a6656ff55ed3b39d7c7d7823f9dc3d7 *inst/extdata/IMGT_data/templates/Homo_sapiens_IGH_any_leader.fasta
c54dd3e8aec2c76ca161cfb6a632766d *inst/extdata/IMGT_data/templates/Homo_sapiens_IGH_functional_exon.fasta
d11dc21c815bf0bd19a08793a75b2744 *inst/extdata/IMGT_data/templates/Homo_sapiens_IGH_functional_exon_exp.fasta
d18839006b123efbff46d1ac293e7a4b *inst/extdata/IMGT_data/templates/Homo_sapiens_IGH_functional_leader.fasta
c1805a994be22384f185613ab9e75aba *inst/extdata/IMGT_data/templates/Homo_sapiens_IGH_functional_leader_exp.fasta
a77a94565e00d962eb5cbb8fdac05b9e *inst/extdata/IMGT_data/templates/Homo_sapiens_IGK_any_exon.fasta
70200256d6d745f9223db53345faa8c5 *inst/extdata/IMGT_data/templates/Homo_sapiens_IGK_any_leader.fasta
b3a2b181bccc6c004e9bff7d2102665b *inst/extdata/IMGT_data/templates/Homo_sapiens_IGK_functional_exon.fasta
3204ae5d3016b187f65e51c22c2134eb *inst/extdata/IMGT_data/templates/Homo_sapiens_IGK_functional_leader.fasta
4e50ef02c726902c21aa13767cd3abcd *inst/extdata/IMGT_data/templates/Homo_sapiens_IGL_any_exon.fasta
ff4caf25a513cf54f4c0a6aadd0c9275 *inst/extdata/IMGT_data/templates/Homo_sapiens_IGL_any_leader.fasta
1aa5de3404cee46c62a77a946f6646d4 *inst/extdata/IMGT_data/templates/Homo_sapiens_IGL_functional_exon.fasta
b31a294916acc56b515b989a317dfd79 *inst/extdata/IMGT_data/templates/Homo_sapiens_IGL_functional_leader.fasta
9c26a2fc8ec9ed5a2c3594fc4ce7ae73 *inst/extdata/Vir/HIV-1/gag/comparison/primers/Wei2004.csv
5b0431667ad2cea543ace2bbef38fbd8 *inst/extdata/Vir/HIV-1/gag/comparison/templates/HIV1_REF_2010_gag_DNA.csv
7e972a48e632a157a68123bb5418a23b *inst/extdata/Vir/HIV-1/gag/primers/Wei2004.fasta
beab63b17f8531ceb721b6a42e620db9 *inst/extdata/Vir/HIV-1/gag/templates/HIV1_REF_2010_gag_DNA.fasta
3cfdc438cc8c04ee06be3a7ff490e44d *inst/extdata/Vir/HIV-1/pol/comparison/primers/Dudley_2014.csv
7f64eccbe999aa61254f7b6fdcc01d42 *inst/extdata/Vir/HIV-1/pol/comparison/primers/Nie2011.csv
2c41b3f001274ea534d5709eeeabb4fe *inst/extdata/Vir/HIV-1/pol/comparison/templates/pol.csv
2ed8246f5dbae1a413e8edf0700c1496 *inst/extdata/Vir/HIV-1/pol/primers/Dudley2014.fasta
dc7b032241eeaf5eeb104195b404214a *inst/extdata/Vir/HIV-1/pol/primers/Nie2011.fasta
75c9637eda46c3d7411e6c37113097bb *inst/extdata/Vir/HIV-1/pol/templates/HIV1_REF_2010_pol_DNA.fasta
fb6e60cf1f52a656b69cc91913f1590c *inst/extdata/report/disclaimer.Rmd
ed4091eca9732e12ba5b1b0539861075 *inst/extdata/report/header.tex
ce2dd11fc84976223421fa11c122e690 *inst/extdata/report/logo_text.png
ca87a59d6fdbc0950ecb0def26d801f9 *inst/extdata/report/parameters.Rmd
6f0ce3d4f340fb44b67ae44d622be171 *inst/extdata/report/report.Rmd
64a0ea1b46627926fa2a082af97a135a *inst/extdata/report/report_comparison.Rmd
8ea3314145db4b12ac01d6dfc534ab7b *inst/extdata/settings/A_Taq_PCR_design.xml
ff0b4caaa8aba062fffac279ee7f84a2 *inst/extdata/settings/B_Taq_PCR_evaluate.xml
d05b9f6663544c57b56b1ac46d1c3767 *inst/extdata/settings/C_Taq_PCR_high_stringency.xml
ba5f0bb00719f5d819afcdc017c89e14 *inst/extdata/settings/settings_schema.xsd
b45ac1f0785572f41414b7b9fed3f309 *inst/tutorials/introduction/compare_primers.Rmd
3ee89ea405f3a78d3787592f3a5e5915 *inst/tutorials/introduction/designing_primers.Rmd
cd49be00d645d3c6cadf11c2b6e662bf *inst/tutorials/introduction/evaluate_constraints.Rmd
7b05d6e15261882067e2ccb84e22d1b2 *inst/tutorials/introduction/introduction.Rmd
40a0f8215fc8ffa41190bc36d29055a7 *inst/tutorials/introduction/introduction.html
179db58bc28243cda0e92532ea626b87 *inst/tutorials/introduction/loading_primers.Rmd
4b35d2fd18b547e25c7bfbf32655b9b5 *inst/tutorials/introduction/loading_settings.Rmd
f65daf0189cdf2e4af20bd5404acd8ca *inst/tutorials/introduction/loading_templates.Rmd
74ce2f4d1bd6daeffc1977e4272f81c3 *inst/tutorials/introduction/preliminaries.Rmd
2f21ca734b85bcf720d6258c6de3aab5 *inst/tutorials/introduction/primer_coverage.Rmd
262306cd58c387051cefd4bea19376e5 *man/AbstractConstraintSettings-class.Rd
37e522701dee89ea24f26d3eb8c1d427 *man/AnalysisStats.Rd
695af5908b401a90ff6e6b6b748634f1 *man/Data.Rd
07ed796b1ea30278065d07b67cb56574 *man/I.cvg.Rd
280fa05f44573d31a4cb048facbc4e3c *man/ILPConstrained.Rd
241e879e0d34edba3547d6e1e232c843 *man/Input.Rd
7ef343f456b24341a20b17e188e4c781 *man/J.cvg.Rd
fd8574e9ec33d938060e6984a8b995a9 *man/Output.Rd
77f8f01169726fdfea5c42b09590cf53 *man/Plots.Rd
c883095251d05c272adae8cce5aefffd *man/PrimerDesign.Rd
91dbb8cb2edf0ece3c1b6ed916f8eab8 *man/PrimerEval.Rd
b5404045dbac7ac34353c96b440e7070 *man/Primers-method.Rd
868741e57a2177863e84494bfa5dbe24 *man/Scoring.Rd
2bcf78385948f269560fd5f0aebb153c *man/Settings.Rd
678b9877b48546012f167479e65f1d31 *man/Templates-method.Rd
49754a8588f4fffe3044e9a942abc89c *man/TemplatesFunctions.Rd
98c8c88b59715220cf15db1a59d9e937 *man/add.coverage.constraints.Rd
98a611bbbdf6efdf30e89eeef389b563 *man/add.dimerization.constraints.Rd
6a0683111b152cfb56bc167f2bd6ac4a *man/add.uniform.leaders.to.seqs.Rd
568637c6339897704a78b2c500a20aa7 *man/adjust.ORF.start.Rd
58a3a2f1dda6dcf8e459ae61daa741e3 *man/align.seqs.Rd
fa97ac14908dfbda7d0589e7785c490c *man/align.structures.Rd
a4f92c411c6ba538512f44eecda43951 *man/ancestor_of.Rd
7ab4217ab1bea103fe33463249486a6d *man/annealing.temp.rule.of.thumb.Rd
77dc3a753d8f33caa25a54311f80db4c *man/annotate.binding.events.Rd
55512e05d6fc6af4a3e3d46cc8d4a624 *man/apply.constraint.Rd
4c0c458e26ed3f16c1a9bb1daec6e8fd *man/apply.constraint.list.Rd
01f3b0da64fb492ea2663d8023bc58a8 *man/assign_binding_regions.character.Rd
5b2cce4adc84cc2391f651e6c143b3f6 *man/assign_binding_regions.numeric.Rd
3e0b996fb9fd340f6d26c8e5143c6c75 *man/augment.primer.cvg.Rd
ea5ae2c64959463d1f2b59193acf24f4 *man/batchify.Rd
38a1b1110e22ed03309a6c4059392d1a *man/batchify.simple.Rd
69ff0b858be88a7188d88cba5e390432 *man/batchify.temp.Rd
39097b762287d68b5b8da261cd1d9383 *man/build.ILP.df.Rd
3943b2e6b25a104dda9caa47e25695bc *man/build.gain.df.Rd
191b3a36f536488f383088b822f495e6 *man/build.tool.overview.Rd
a0145b684c1ca5be17718a57b7666049 *man/build_leader_df.Rd
24dc6ca763dbe8a93774c6a0a86db120 *man/call.melt.Rd
f29b925da2f61c4d0e0f4bd59b78b653 *man/call.melt.single.Rd
c94b573f7c9f1d00ea448292d7e46f81 *man/cascaded.filter.Rd
aee1a9fbd4bf44fb18a056d48500cd72 *man/cascaded.filter.quick.Rd
f68f006f3c5269571284afeecf130e39 *man/cbind.Primers.Rd
fda7de59284d66d66a573170764d06af *man/cbind.Templates.Rd
b71dff7819fd65adbe76865966f91476 *man/check.3prime.hexamers.Rd
ef33f9d099968963282c3e809086c4df *man/check.3prime.mismatches.Rd
7f9f83d5f766deac7c2ca574158d96c0 *man/check.init.primer.length.Rd
a5380feb640c6aa7e7ddde41a6b69165 *man/check.init.primer.length.single.Rd
6e260490f3dbd73d28650fda992d538a *man/check.mutations.Rd
1c0cd2cfd009d65cbf0c4cc37a4bcbe5 *man/check.template.constraints.Rd
8903e33a82cd4063898c64542ff9bd75 *man/check.tool.function.Rd
aa3a78c4113de0e3a4c2a2d01e5ffd8e *man/check.tool.installation.Rd
efa5148a8bb1df63a9ddf3515dab625c *man/check_constraint_settings_validity.Rd
b903f7fb0ae79cde7f1020204b065c7d *man/check_constraints_comparison.Rd
d67287d84621b73ce13e4f230663805c *man/check_correspondence.Rd
6de290ac769f5dc479c2bc6640379cec *man/check_cvg_constraints.Rd
942d567961ef167d19e9d2ad2599f62e *man/check_interval.Rd
a67d0dab45d14f6ca6120c4d64fc9f2f *man/check_limit_value.Rd
4cb27115f6c99131e59d9d855bf5e065 *man/check_limits.Rd
9bdfe3690aeeddd71e4df6a8f69e7d5b *man/check_names.Rd
ee2bedffd62b7aae7b5f98e2e1b0ab60 *man/check_report_deps.Rd
08f1beb56cc593a5494465a476d96192 *man/check_restriction_sites_single.Rd
210bc1ee560d1ea8c4b20fb63d33c498 *man/check_setting.Rd
413718c12afef9c0195521364d0acd42 *man/check_settings_validity.Rd
31e38c8ec80928eb928cc436504eba39 *man/combine.binding.events.Rd
c642051b2978de9363b54e94b223b8ac *man/combine.strings.Rd
4ed1091951d30e5c013703ca7a4a2c67 *man/comp.Rd
3fef1f3f96dd0333d56fcb6161a1d40f *man/compare.constraints.Rd
32a01c9a5ef33fd16576d0792a925ef6 *man/comparison.cvg.Rd
5120abc5e0d90cfe923c3135c3387e27 *man/comparison.stats.raw.Rd
f2a7c322e1e9baffec59c8cc976f67ea *man/complement.sequence.Rd
860497b7c2f94a9289ef16aa398a81d0 *man/compute.Ta.Rd
96f9419aff6505545e138eeecd6e8cde *man/compute.Tm.baldino.Rd
42e0d495cd0082a5336ff03897c85adf *man/compute.Tm.sets.Rd
b293d68c4c21e4d6c204b6a1854611b5 *man/compute.all.cross.dimers.Rd
a1871da0758fd64734f29db647c9d7e7 *man/compute.all.cross.dimers.frontend.Rd
f04c674ed86327ff9fb3e411a4cab1d5 *man/compute.all.cross.dimers.unfiltered.Rd
fee7792da73d914686b26402f54d8071 *man/compute.all.primer.subsets.ILP.Rd
bce02b84bad268c7215565f5c945f6e2 *man/compute.all.self.dimers.Rd
2384961af3344ef2859f60e084ac2669 *man/compute.all.self.dimers.frontend.Rd
bb0fe5e20268470d8d34ec19fa0f64da *man/compute.basic.details.Rd
e87b0177f69de4fc7e1630995d90d425 *man/compute.constraints.Rd
45ea9f9962bd8081f9a8070a58b4ab4e *man/compute.covered.Ta.Rd
d79f2d40ad0d9699e9fb1def110beca4 *man/compute.dimer.matrix.Rd
5e74b3a69a4645872afa1dbe7e8a30ab *man/compute.efficiency.Rd
a747a6c5f3ca6cd36b367913245933f2 *man/compute.empiric.melting.temp.Rd
a50ba96d56f94b15f19d182b64a584e4 *man/compute.gc.ratio.Rd
0b660b8bf999c6c1a4e923141a9e59fb *man/compute.melting.temps.Rd
726bb0a178cc63992c966034d2d2769f *man/compute.melting.temps.thermo.Rd
2115edcf34ba6be5f929ff10becc1023 *man/compute.mismatch.table.Rd
89b01db5464887b88ad3c7a486b87ae2 *man/compute.primer.efficiencies.Rd
d9928cb9254619c418239f89c62bee74 *man/compute.secondary.structures.Rd
f43d8949795196602ddcb08234b262dc *man/compute.sodium.equivalent.conc.Rd
53cf3f2615c204581ff711f29e074573 *man/compute.structure.vienna.Rd
ba288c0959f939ef336c27680158797c *man/compute.template.secondary.structures.Rd
9856f239d7a4b42abeadfcbd1cd4d4bb *man/compute.unique.covered.idx.Rd
403ea9631e3bc2f8ed2dbbeaa1489261 *man/compute_annealing_temp.Rd
9b614ea868dd3d1548d45dff0601294f *man/con_select.Rd
24b449b87feb9d84ae24ba1facba3d25 *man/condition.Rd
02cbc9ca3b18b924e969c3f820d1e844 *man/consecutive.GC.count.Rd
d7cf09e026c73f64da44f49254a5b513 *man/constraints.to.df.Rd
e48d334d7a525c3728617ecc840fd3be *man/constraints.xml.format.Rd
85842bd5c206b1757848dbf3d48ec9b2 *man/constraints_to_unit.Rd
98c897182dbf4281ef34090c5d451e7d *man/convert.PCR.units.Rd
8d0b650ec6c70c4701b796697fed1299 *man/convert.from.iupac.Rd
a5b8e17985993a7c07e7b8fea34350f6 *man/convert.temperature.Rd
78322f00efe6fd0e2de1d573f5972419 *man/convert.to.iupac.Rd
b98cda87c7682dfa1b14c034f88e91a5 *man/copy.melt.config.Rd
a66b460b64c9280a8d6dbb45c524ad05 *man/covered.primers.to.ID.string.Rd
e3f86977069baa7938f3246d42fba636 *man/covered.seqs.to.ID.string.Rd
cd9ca2d08f217f5871b7c5e0f52ea522 *man/covered.seqs.to.idx.Rd
e67c66b801f0600d24292ff91a607263 *man/create.G.matrix.Rd
ca6b25f6f96c8a538d56a35268a35777 *man/create.PCR.table.Rd
af54104dac7f748e19cfc1eff44792be *man/create.Tm.brackets.Rd
d4e9765184474c7538760244528c7d1e *man/create.constraint.XML.Rd
3d97de769bd4c8dced3df988639665b7 *man/create.constraint.table.Rd
c446ced50baf0cb63b98f0d953c5a592 *man/create.cvg.text.Rd
387e8d964074d2c417e31c8ab00f8614 *man/create.initial.primer.set.Rd
650ad267e839b799aecd7c443052633e *man/create.k.mers.Rd
86c51caafd98ced154088d7fc67ac2d6 *man/create.kmer.Rd
7816397c17662d04269e27e2704ee9f3 *man/create.options.table.Rd
6ebe974c658d0342d23a9fe891191d64 *man/create.other.table.Rd
e1cb51676c7853e8a1857f9c2a9c6778 *man/create.primer.ranges.Rd
aae3c9f0ae310938f400f1cb1c42dc97 *man/create.primers.naive.Rd
b17443af7c48750cbaffedd88194d9e2 *man/create.primers.tree.Rd
515c17414e573715286d194459d357be *man/create.uniform.leaders.Rd
6f841566df2920dc09c997dd9dec4e46 *man/create_fulfilled_counts.Rd
684e120627f25d8049d29f73fe3e2ff2 *man/create_report-Primers-Templates-method.Rd
1a9b6d1bab2d3421417925c14d2a1b20 *man/create_report-list-list-method.Rd
f24eaab0127f47c76d1e2da406a1f1ff *man/design_primers.single.Rd
c8c7c5480148e8202cc161b9c669f793 *man/detect.gap.columns.Rd
7f9865abb9486e416b6d6b37c88379bd *man/dimerization.table.Rd
a6cc00eecc1da270275cf758bb134839 *man/dir.copy.Rd
bd5f226bbac36aaaf9e409d75bfbd4fc *man/disambiguate.primers.Rd
422db435e5ac1731d7520e71d2bda938 *man/estimate.cvg.Rd
f45a0fe0dfd896c10c5e0419680ff58b *man/estimate.cvg.dir.Rd
28388777d664493f64ac7fb50bfffae0 *man/eval.comparison.primers.Rd
324ac87998aa8a847a64b964c84813cc *man/eval.constraints.Rd
0033a2663cfbed0760ad8b0b0fdf49e7 *man/evaluate.GC.clamp.Rd
6d40106f83f01d02b75ffd300b414e85 *man/evaluate.basic.cvg.Rd
3ca307ac96e2d47511b43ee05dd08617 *man/evaluate.constrained.cvg.Rd
2d2ec0a6bbdd8969540ae5eb6fbd02bf *man/evaluate.cvg.Rd
9ca525193ce595235cb0a560e41447bb *man/evaluate.diff.primer.cvg.Rd
479a09386371f11e6dcf6b28545a6d58 *man/evaluate.fw.rev.combinations.Rd
e2c7c103088ef48994d80b511da66dbe *man/evaluate.primer.cvg.Rd
e30d72cf7ddf690c6533145fd943d299 *man/evaluate.template.constraints.Rd
89631684a8fbb3406428a314a58c860d *man/exclude.cols.Rd
9d3def10bbd11c8c203e571b56dbe008 *man/filter.by.constraints.Rd
81e7e7e41dbfc8689948aeff00fda815 *man/filter.comparison.primers.Rd
f64ec76ab9a90e9bd53d341f007375c0 *man/filter.primer.candidates.Rd
dbeff18a036c9281d7a72aa75773e037 *man/filter.primer.set.opti.Rd
5efe5f98ba9337290ff74231dd6f2913 *man/filterLimits-methods.Rd
609fcd696d5bca6f254f38507b478440 *man/filter_primers.by.Tm.delta.Rd
e2891333652a6253a16dac9a3ddb2cf9 *man/filters-methods.Rd
17cbe0d05ee5d3f9a6a9ee3e59a5ec90 *man/fix_constraint_boundaries.Rd
896cf18579997d1bcabe702b5a79e21a *man/format.constraints.Rd
eda1da8ded8cc2f2527f298871a3b6ce *man/format.seq.ali.Rd
71def1fe19c4494137ce81552e53a3f2 *man/format.seqs.tex.Rd
de0d65c56571f0abe8c0bd75e068eb83 *man/get.3prime.mismatch.pos.Rd
20ed699222938e16819e2464c84462ef *man/get.ILP.vars.Rd
76c8aec65af0e776a284acb81f3713a5 *man/get.ORFs.Rd
3ff162847b75b5e80b35e881a1852e89 *man/get.PCR.settings.Rd
7aea0326fc667bcb527b5352a54da76a *man/get.analysis.mode.Rd
60e37231fbc3fd430dc3d647736826e1 *man/get.consensus.seq.Rd
000e9e6b74985e6c2b07d973f9d26e86 *man/get.constraint.value.idx.Rd
2b2f42775456b78df55d563e462a3586 *man/get.constraint.values.Rd
f4222daf8150433756f7009bdde2912d *man/get.coverage.matrix.Rd
737a574cc3578f5195bf0ee1241aae64 *man/get.covered.templates.Rd
3cc0310e85d1222b453c7a86f42a34f9 *man/get.cross.dimers.Rd
b69d0896337256bab78245e316ca4e8f *man/get.cvg.constraint.settings.Rd
9a1e0396c26efa505f2396d431ca01e8 *man/get.cvg.gain.Rd
dcf846ae77386b3961730fde25831024 *man/get.delta.G.Rd
a41a4157d0e7faf11dd1683bddd63ec8 *man/get.dimer.data.Rd
5bbee434724d4121aae7923a4c2cae77 *man/get.duplex.energies.Rd
71f9cd761f2f4308d6a67599b5648e23 *man/get.eval.cols.Rd
16e6ea020033b94f995134c58fd81593 *man/get.extension.Rd
ff92ef7aa16aec03a42c4827c36d2df5 *man/get.init.file.name.Rd
34c06546eec16e3d91a8b2786d83dbb7 *man/get.leader.exon.regions.Rd
80dea39799bafdd990693298ff5f4a2e *man/get.leader.exon.regions.single.Rd
e93979cddddb33b504953bb85cac39fc *man/get.matches.Rd
28f1cbcd9c507e3793071794abe37a8e *man/get.melting.temp.diff.Rd
0aedba349e2dc4fd2a6faa7bf261fbf1 *man/get.merge.idx.Rd
9f9f76895050a9fb2ce35549a08a7070 *man/get.missing.df.Rd
7d66d3cf6dc800e461182fa35b9a83ca *man/get.other.constraint.settings.Rd
0fe9fada7d95b3ce085bf5451653b7e6 *man/get.plot.height.Rd
e8652cad4441f8560ffa1663c9f85468 *man/get.primer.binding.idx.Rd
2a7c4e00c77e5667d6b2af617be1895a *man/get.primer.identifier.string.Rd
3e1e0361509e7dba1ca009eb60d0e09e *man/get.redundant.cols.Rd
02e269cc60003b530a65c84eea3c5aba *man/get.relative.binding.pos.Rd
3f411a93a9d41764d6a2cfd389e11dba *man/get.run.names.Rd
409cb80b716f6a3666f4271857fcb913 *man/get.self.dimers.Rd
8c140a0d52ca9b6746047a3502b9bef6 *man/get.sets.from.decisions.Rd
50071c93751db261bc7bcb57e541a640 *man/get.static.tool.info.Rd
a7adf7e0b6241ba0e42ae17e9e7faca1 *man/get.tree.seqs.Rd
feddd5731913c5934255a13e01eb1dc7 *man/get.unlist.idx.Rd
7fca33afd95affc14a132dacffbc032c *man/get_constraint_deviation_data.Rd
31191e7b9cca20157e6532cfce802173 *man/get_covered.vanilla.Rd
b7ab9130855bdb818be40f8434960460 *man/get_cvg_stats-Primers-method.Rd
8987f511ff44c7e4d1a284e915d96e85 *man/get_cvg_stats-list-method.Rd
6c8ff4e3ea6b39bbe4c41a2497c6a1af *man/get_max_set_coverage.Rd
9a36024882f33e52fc36eb741cf2def0 *man/get_plot_primer_data.Rd
89ba67de7747d45b623eae790c639c35 *man/get_primer_cvg_mm_plot_df.Rd
c4f1cdab52151bd879842fb783da649a *man/get_report_fname.Rd
67c87f784af3c82fdbd410156748587f *man/get_template_cvg_data.Rd
16b73f91702eb29f23b0b325f495bfef *man/hclust.tree.Rd
b59bf81ccd73d5d56c355c1fd156333b *man/highlight.mismatch.Rd
282cc9bbccbef8c69ea6201eee979c4e *man/html.format.structure.Rd
ee9e8d010025aeb008b970f4e1467b82 *man/initialize.primer.set.Rd
efd4e29f49133b2b2e3771899856ba6d *man/insert_str.Rd
34467d4553e25b1724799e989cf8a64a *man/interleave.Rd
afde8f886f88c61de0894d0f91a4d844 *man/joule.to.cal.Rd
4f104331235077fabc694465e8e0f2e4 *man/listToXml.Rd
7094bb8fecb7c92ec765af34545d4e03 *man/merge.ambig.primers.Rd
d3dfdca82358575874d14adb6906b720 *man/merge.binding.information.Rd
821c1c0d3d0b5ff36da01ff02e4571c7 *man/merge.primer.entries.Rd
62ce2f7c58eaf94248f4325367de6aaf *man/merge.primer.entries.single.Rd
8db5d8b82d651c81ec4fe9dc43476253 *man/merge.select.Rd
0305d073f204aab5a9590f51ed83053d *man/merge.template.decisions.Rd
72db1f4ed2334c1522ebf0abe55fee1d *man/mismatch.info.Rd
7355c902796c621e919f5ab15d41edaa *man/mismatch.mutation.check.Rd
ab1ddb6607962a4f145402e6eaa5daf5 *man/mismatch.string.to.list.Rd
58686785cc6f88f332bbee61d9e46515 *man/modify.col.rep.Rd
b6651244c152987a22df31bba85529d1 *man/my.disambiguate.Rd
3cd2ef815645a1b62b75b7c84b35c054 *man/my.error.Rd
c79866d86d1cbd559bcf9e4eb96cff9b *man/my.read.fasta.Rd
b9bb9169ed193a55bfe71dd8c8183166 *man/my.warning.Rd
37f4fcf8bd02e9351b992bef85022a92 *man/my_ggsave.Rd
f75f4e8f9996c89fd2155e552e7a607b *man/my_rbind.Rd
f4bb55f4868a92dde79df86e83c2d3e3 *man/nbr.of.repeats.Rd
2cc318c8ae2c293a1c999a2bd9fe193e *man/nbr.of.runs.Rd
01ea67968c5ba6725778743d9e9eefa3 *man/openPrimeR-package.Rd
fb5ba4f522e00fe5b10912216ef33f47 *man/opti-methods.Rd
caf8bc85c57da0d69ac990478b5401a9 *man/optiLimits-methods.Rd
c05e791f60693247688640fc5ded7673 *man/optimize.ILP.Rd
8efb6a9a2b5f3850901ee0ff0018f9aa *man/optimize.primer.cvg.Rd
c853f2ac85d9ef4645ffa99c5e8c1b67 *man/optimize.template.binding.regions.dir.Rd
a37d853f81bd501785f72511db6c7904 *man/optimize.template.binding.regions.single.Rd
6cb31d2561a9fb4ee57685d94fa6cfac *man/pair_primers.Rd
5beebb66a5541f7f6f0fd66722c50745 *man/parse.IMGT.gene.groups.Rd
d504cfdf9186060f0f78cd92ff0ebdab *man/parse.constraints.Rd
85c4e45f1744f2c295f2949fa2bd8b0f *man/parse.header.Rd
110fbb3175b9f57f960095f3c9347f36 *man/parse.oligo.results.Rd
dcf00f6bb01016d80160ff067f1376b4 *man/plot.Delta.DeltaG.Rd
8744340292c360e02c216e6035d65f74 *man/plot.all.cvg.info.Rd
e69baad20ae0972918969c920fc18f29 *man/plot.all.filtering.stats.Rd
85bf7584c0b2ae3d08f39f29715fb15c *man/plot.dimer.dist.Rd
5f8e3815936b6a7366aa5487632d1221 *man/plot.excluded.hist.Rd
2dffb3384ca47c6a5dd9f480654c82e4 *man/plot.filtering.runtime.Rd
074b7109246b73cadb1f02f64093271f *man/plot.filtering.stats.Rd
e10d8d2b09a0a64fdb2de0be333799e3 *man/plot.filtering.stats.cvg.Rd
c259950883c61a0d1089a06d40677902 *man/plot_constraint-Primers-method.Rd
2c565d035f2bf59509f5e87ebfe7e233 *man/plot_constraint-list-method.Rd
d53a06d0c2d217ef8eeabeb593fe98eb *man/plot_constraint.histogram.Rd
3cbd66a03bb014cb1e61b701ae07c2ca *man/plot_constraint.histogram.nbr.mismatches.Rd
61afc3c25661f9b6267959676037f884 *man/plot_constraint.histogram.primer.efficiencies.Rd
1f3cbf6769c301c8e018b565ddf2dc39 *man/plot_constraint_deviation-Primers-method.Rd
dbd5dccd7c9e5169cff13f3af58ce830 *man/plot_constraint_deviation-list-method.Rd
74b8a8dd8e90d9cb72168e49af94099b *man/plot_constraint_fulfillment-Primers-method.Rd
5c5a391a1277710eb39b7e9c451a06ee *man/plot_constraint_fulfillment-list-method.Rd
d9b9ecb0751ac6c0a2f4e3f7d273c160 *man/plot_cvg_constraints-Primers-method.Rd
db9117512408b978fe937d0dba638a1a *man/plot_cvg_constraints-list-method.Rd
34e99c12b1536654fcd54c1c0d06297e *man/plot_primer.comparison.box.Rd
1508fcb8b91f2ef7dc25d179b80b32c9 *man/plot_primer.comparison.mismatches.Rd
b14247e4e80dd1a37824cf558c75548e *man/plot_primer_binding_regions-Primers-Templates-method.Rd
1832555c94d1ba2cef5b558a896ed1d1 *man/plot_primer_binding_regions-list-list-method.Rd
5ec2407167c7fc3325a67ce191ad24d7 *man/plot_primer_cvg-Primers-Templates-method.Rd
92f34c494824dfbd3d9cf9af55fa1a03 *man/plot_primer_cvg-list-list-method.Rd
2b88792f1fc221b92dd0b6a5b349311d *man/plot_primer_cvg_mismatches.Rd
354bbf52707773696732cde69c36f9ff *man/plot_primer_cvg_unstratified.Rd
0dca37f5c5598177cbf69764ed948612 *man/plot_template_cvg-Primers-Templates-method.Rd
cda679c20f0510221ddff48d2937d27a *man/plot_template_cvg-list-list-method.Rd
128e7ce1fa7bafa4286eb9f3c25f9fcb *man/plot_template_cvg_comparison_mismatch.Rd
60551c9412a2fbba91541133bcd545d7 *man/plot_template_cvg_comparison_unstratified.Rd
56fc7134172620a3dc1bb34fb8e4921b *man/plot_template_cvg_mismatches.Rd
06cd31e9c28612da3d4a1132dbf58a72 *man/plot_template_cvg_unstratified.Rd
0ca65e709d4f2cce792a43b20e8fd54b *man/plot_template_structure.Rd
752ebb44cc2fa052d88ecb846d16e6ca *man/pos.to.range.Rd
00e2a1c5560b536d992863bcf7422d31 *man/predict_coverage.Rd
b7f6eded99f5cd769f47c1450d59d3da *man/prefilter.primer.candidates.Rd
09ef8abce0f67962249598de8f69a7af *man/prepare.constraint.plot.Rd
64619b0705f7e65ea8f5857315e13609 *man/prepare.dimer.seqs.Rd
8654271855c8faa3afd943ae61ae52fe *man/prepare_mm_plot.Rd
be352ea5f900e63ba8d66818abe55ac8 *man/prepare_template_cvg_mm_data.Rd
32b4772612eded9a806162139ba6e9fb *man/primer.binding.regions.data.Rd
533b1530ba9d331f3530c2fb104421da *man/primer.coverage.for.groups.Rd
b32b07c6482b28e033d1d1de730d6e5c *man/primer.set.parameter.stats.Rd
778e4c609f0d661b8f9b88e335c7f46e *man/rbind.Primers.Rd
4842c92d09ba50069821112b0dff2d8b *man/rbind.Templates.Rd
783364eb4c83cfbeb31090e971730bdc *man/rbind.primer.data.Rd
3a5975a8fea8547783c92d85aea2018b *man/read.leaders.Rd
1baa9e5f95e28db97d2330625e49ba85 *man/read.secondary.structure.raw.Rd
583b3ec5657bb5681c72a11fc5887b1f *man/read.sequences.Rd
4a5299677e0fd13b3a80ad0a92bfa780 *man/read_primers.internal.Rd
11aa0b427c941fd343c9fe5046e02e86 *man/read_primers_csv.Rd
1aeba8c4d7894ed7311bbe3658b88b71 *man/read_primers_multiple.Rd
f348b200b96626cfc1c4572c9755744f *man/read_templates_csv.Rd
b00eb4506faa3a900b6a61c1df1c07d0 *man/read_templates_fasta.Rd
d3cde378f3ee1d914b8dba71b962cb9b *man/read_templates_multiple.Rd
bccfd5a053001e61e7fbc7275e74244b *man/read_templates_single.Rd
f5f3ec9ff4041d1fc5ce877de50b93bc *man/relax.constraints.Rd
da86b31db83060afd246e8453312c91e *man/relax.opti.constraints.Rd
44370ab1757be188e987949095935ca6 *man/remove.redundant.cols.Rd
9f4ce737298107fc1e4eb7c503f88ea3 *man/remove.seqs.by.keyword.Rd
1ca88ae8958fd2259e1cec70d47c731e *man/rename.constraint.options.Rd
8719b3c8a73435d014772e32a5df5976 *man/render_report.Rd
81d8e03df7727eacfa87b9912e1f3a64 *man/reorder.primer.table.Rd
0191005aa8230cd1ae02dd44d354096d *man/restriction_ali.Rd
89f591fd6ec18ecfb0c7c6e51ce50d06 *man/restriction_hits.Rd
88200227d921775d705f68ca2cf641b4 *man/restriction_match.Rd
0594efb4abcee3cacc9da6b02075259a *man/retrieve.leader.region.Rd
35cfad52ab23e0b97e853d0f29b9ed9d *man/rev.comp.sequence.Rd
0142dc468389072ff4c9917068b20a21 *man/rev.sequence.Rd
208ddc2907f932bb445d155d55f41758 *man/runTutorial.Rd
cbbaaf8e5aa3be58bc51139df697d7d9 *man/sanitize_path.Rd
2341c7597a1c15a743d09a4f2a6928e4 *man/score.conservation.Rd
00d23555fad8ade084081731082c986e *man/select.allowed.binding.events.Rd
32725b0d7ce3920842d80ce791a60042 *man/select.best.ILP.Rd
82e25416224262c4d3f5c86442a2cf33 *man/select.best.opti.result.Rd
77475f2349f9b41826ddd3923257ad3e *man/select.best.primer.idx.Rd
d38aa9fcb2af687e874978f9fe8e06b0 *man/select.best.primer.set.Rd
9434d034accb28ec471a8e9195b297b6 *man/select.binding.events.Rd
4120de7c869bfd99cddddfd91f40c813 *man/select.constraints.Rd
0b06e89f6c97666ebee2f9aea84c9ba5 *man/select.min.cross.idx.Rd
f4fe9b31e229e8e1a8df3e6221d16402 *man/select.primer.region.by.conservation.Rd
6024b05651aa129cee14e78c0ff60960 *man/select.primers.by.cvg.Rd
b8831eb537282150ed463688d25e8ac2 *man/select_best_binding.Rd
6b12e0879475d75820287ff222867132 *man/selenium.installed.Rd
c8b6ceb76b32e4c7298445a2d66517a1 *man/set.new.constraint.value.Rd
246a2e543ac89612aed3988762b47a32 *man/set.new.limits.Rd
592ff31ea362a6730357d2db1ba595ce *man/shannon.entropy.Rd
ca56791c0025b011d8e9cf694ea0922c *man/solve.ILP.Rd
3730cabc833188fbf29ffc8984dafdf6 *man/split_str_by_index.Rd
99b8799e82f0068e687cc0b36025e66d *man/stats_plot_data.Rd
b94660f830dc3c180a1bf53a138f7534 *man/store.filtering.sets.Rd
b28259c29ddb6ac1b41efdc280c34dc2 *man/string.list.format.Rd
a9ef225e8274d6fd6ff54e42cc02e985 *man/string.list.format.total.Rd
dd8ad2e88048ed7c1b1b7eeb8b7c971b *man/string.to.IQR.Rd
8371f1c6d7955b068349bfe0452d7a78 *man/subset.ILP.Rd
5aa7d7b5af9887a06ee6ebc0094970d5 *man/ungap_sequence.Rd
01aefe05c7756bed37963fbb48e947da *man/unify.leaders.Rd
f395425bf92a786e70d84f38b24f5d4c *man/update.binding.ranges.by.conservation.Rd
6e563fdc039303a8f0f7e36ff516397e *man/update.binding.regions.Rd
d6cf83a97bb0e47b8faef3223b75cbdc *man/update.constraint.values.Rd
d8ddfe3b352e8fdd3fb6c5dba3b451df *man/update.cvg.data.Rd
5be5a0117cd141052782eeae4beec923 *man/update.individual.binding.region.Rd
1bebdaeed8468ad32a7ad27f14b99a04 *man/update.opti.results.Rd
9d0002e528092839e673ec0ab341a5c3 *man/update_primer_binding_regions.Rd
3af9e9b93d7a32e0d96546b21d42d944 *man/update_primer_cvg.Rd
f9627ebe9e129bfe07901fac6f136b7f *man/validate_primers.Rd
ff20047b2505d8d3a0fea2d975ea6640 *man/validate_templates.Rd
4dd3ded0383bf9d024814924a8b18987 *man/view.cvg.primers.Rd
c24510f63f7ba24105040129b22b0612 *man/view.dimer.df.Rd
1105ebb4648ef3b8f342df2e277222cf *man/view.input.primers.Rd
684207ca2676953e767db9bee9f96f25 *man/view.primers.Rd
a745577d8b35ac49021af966ed7990cf *man/view.primers.report.Rd
19274a104ab2812298aa800fbd79d044 *man/visualize.all.results.Rd
10db34fb57c98096025679de2c938917 *man/visualize.filtering.results.Rd
cd8d36595ea2e3461f84e94ba9feb615 *man/were.constraints.relaxed.Rd
d18834ca76de749a98439d1f29bf43fa *man/write.out.primer.info.Rd
411824f9bb93b6d177f6c96ff26f29fe *man/xmlToChar.Rd
65b9fb77ffffe3cfa14fe711ab73b2e8 *tests/testthat.R
7cbe885fe61f719c1ad6b113b6d82518 *tests/testthat/load_test_data.R
5c17f7bfcd4d61ef52f74e8fd4923d04 *tests/testthat/test_IO.R
d707bb17c64d1e8dd747e562cd0b0c0e *tests/testthat/test_con_dimerization.R
7e696e0a8d99e58b0f8a311e42707b79 *tests/testthat/test_con_gc.R
8169265053c5352af6a075f5d24c4d80 *tests/testthat/test_con_primer_coverage.R
3b546686496d29b4966e2bc4ac151324 *tests/testthat/test_con_primer_length.R
532825dba6028b0e976a034fa001903f *tests/testthat/test_con_primer_specificity.R
81ed3a9e521c5f39f5c515226b58b9d6 *tests/testthat/test_con_repeats_runs.R
f7d30f766fc974890f30fa86e498bae8 *tests/testthat/test_con_secondary_structure.R
edab9a59ffa02d7729eb75e1e44b7fb5 *tests/testthat/test_primer_comparison.R
ed6312b5280e9521bdcf4926b058e523 *tests/testthat/test_primer_design.R
8f78f7460d98b848471cc0884497c578 *tests/testthat/test_primers.R
8d76cdc09d3ce5211bd0db30c5db2f3e *tests/testthat/test_settings.R
a2dfebf6526a2d565715ce0e8cd0f5d6 *tests/testthat/test_templates.R
18028543eb174131cfef6a8c61f0abc4 *vignettes/openPrimeR_vignette.Rmd
