add20f63b1fb100f8a053c2b5cc956fb *DESCRIPTION
8d7cdf3865033db67a64832da24a65c9 *LICENSE
2c8b9158cc21b5769feb8ea6d750b03f *NAMESPACE
4bf9f16be981fecf4643bb12c6e9a630 *NEWS.md
8eae2429443c8bb67aa4d0f1a6079be2 *R/calculate_all_cleavages.R
b045ea6909e7bb8d1f6b70d8d258d6f8 *R/data.R
cf9769f2e96df32f2b5db1fcca4d0091 *R/generate_report.R
756a9ed4e94ca48046d70010fd1231a5 *R/iceLogo_helper_fuctions.R
1343b3669b0d9c83d57c787648154fc0 *R/limma_stats.R
cdea648fe46ab69b52caee45eb2ce88c *R/log2fc_t_test.R
918269012d112eddbc8560b59605c6ad *R/mspms-package.R
376ae585ca8b46c79bb74fd7057bde00 *R/mspms_tidy.R
520e32bb0e9cdd122d2aab0b8fe44c7f *R/plot_all_icelogos.R
11e10197b97c4201410da94fe1f37630 *R/plot_cleavages_per_pos.R
58a1a48c6459919b21324ea23c25e83b *R/plot_heatmap.R
5c9f4aa6a507546a3d3fb34a89377ac4 *R/plot_icelogo.R
a607e37e2c6ba1ec2223a97db4501dd5 *R/plot_nd_peptides.R
2ed2a026fea3218d1b9427c62e3d0e82 *R/plot_pca.R
2d74532b31373d878ddc65db45f60e63 *R/plot_qc_check.R
124f59ce9643b8d58de6478d287c5fb1 *R/plot_time_course.R
327ae9bf7115021b6f1979ab9c768cba *R/plot_volcano.R
543bcd88435d0745230f8cbcfdfebd38 *R/plotting_helper_functions.R
bd04c9140cded06d9d6b682846e41889 *R/prepare_fragpipe.R
3fd5a8217e75cfed517d95873d6fd1f7 *R/prepare_pd.R
9f5d3c824054d36daa23d0d1688fe5a1 *R/prepare_peaks.R
1b6851e0b2b6e9e2b2b41abb19d8b70a *R/preprocessing_helper_functions.R
408e75bc691698ce9f53757b53a24d8d *R/process_qf.R
974c90ccbb83cc55a7bc1403f1cdc44c *R/processing_helper_functions.R
fd026d1c623415a3255b860a95ab8045 *R/statistics_helper_functions.R
b56ff2b193ecba52f9ec7f3b10cca008 *R/utils-pipe.R
40cd1c48da5df47d9f79cb973c78d12e *README.md
a517291e390a705402f192326b4e85db *build/vignette.rds
27ad76d4889dc095beb65a5acb4e71ec *data/all_possible_8mers_from_228_library.rda
4da3d438441d9f32568204ddfc72b71b *data/colData.rda
2136e87117926df3de76c2e17d469df8 *data/log2fc_t_test_data.rda
fdaaaebccca61bac04cdfecfbef084ae *data/mspms_tidy_data.rda
d258ac889296a652fe72539e461863ff *data/peaks_prepared_data.rda
0bd1b42df64c8fb0fcffc35529bc96e5 *data/peptide_library.rda
59187b4a20cc196248acdcd1ddb0dfb6 *data/processed_qf.rda
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18f699a9ffc2072e2afe02eb0b51631a *inst/doc/mspms_vignette.Rmd
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04c69094c019790c081350a38a098138 *man/all_possible_8mers_from_228_library.Rd
505687d8c76a313c080acac87e0c8bef *man/calc_AA_count_of_motif.Rd
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34d520cc4ea556d5de3b8e2ba03e524c *man/calc_AA_percent_difference.Rd
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9b7f95cf975f9533bc4ed9ba4c70bedb *man/figures/logo.png
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af033da31451f06c3f5526bb5efcbd71 *man/mspms_tidy_data.Rd
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774d9de8e95aa151215efcd304549d41 *man/pipe.Rd
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a0d959212595a245e9ba51de5c9ab010 *vignettes/images/logo.png
18f699a9ffc2072e2afe02eb0b51631a *vignettes/mspms_vignette.Rmd
