75dc55fbb7da227e26f8a23d18d34477 *DESCRIPTION
82f1d21f18df76e8e3acfe35caaad5bc *LICENSE
2a05279702479cedd01d466c59d14187 *NAMESPACE
395e5a9b599690a24022ec5e698722ae *NEWS
c6dfacca98a553e0070262a5389a6341 *R/as.character.formula.R
d8f033af475bdc7e37d5a3b2c259741a *R/combiner.R
a00e9e932c09c746c379d59cc3d23f5f *R/corMirnaRna.R
1ea437b1d4e86296de3f771a1393d885 *R/corMirnaRnaMiranda.R
e3e8dd2a0a6c74d10ae9b66e6f1714ed *R/data.R
23966987864f50cd5140a3f79dc1bbfe *R/drawCorPlot.R
d0c718b190be997894f31a8b358f2ec7 *R/drawInterPlots.R
801f4a98d1140e99dbdd1ac77650fae5 *R/fdrSig.R
735c599b32f09b7bdabf165e120c1829 *R/finInterResult.R
9188e75482b1ea16e3d6540b1ccaa64a *R/geneVari.R
7fb5a5e370222ac47b0056f6e9fd566f *R/getInputSpecies.R
396ea0108c9fc03a96c106e2c8efe111 *R/importMirandaFile.R
e04c62170c53decc312e9ea8c79b6f57 *R/makeFormulaRightSide.R
73378c6b4a740837a224c52bcb4ca664 *R/miRanComp.R
b89ce67f20f8ab3bb66a3b5db87dfd5a *R/miRandaIntersect.R
7d816c6ed3b1c1e516689aaa24b4f4ab *R/mirRnaDensityCor.R
6d6a9dc8c5e1143ab742fb2ca8d6f010 *R/mirRnaDensityInter.R
1c2b77902182655aecf1979d8d915073 *R/mirRnaHeatmap.R
ed583d04737675668f4dc62690532020 *R/mirRnaHeatmapDiff.R
922e5d1f475d08b9589c9d0448947dfd *R/mirandaIntersectInter.R
0a0170cab449421b8e3c440b56d3bf1c *R/modelRsquared.R
6b0bef3436ab690e7333dc08fd05c4d9 *R/modelsFilter.R
f444190607249ecd3c78d7ea97e1df03 *R/models_gaussian.R
11df22bbe1bb28def83e8e2c6e6497a6 *R/models_multi.R
39d9b1dbf2a79b76f1412a1c25a0c605 *R/models_nb.R
a045c20cef2776b9249ba64e37b10d7f *R/models_poisson.R
df43ec5b0b4c2b53e411da7bd42d8028 *R/models_run.R
2f9c6fb52c3d71948082d14ad668ce91 *R/models_utils.R
6a4b5d52dea554c9ffcabff38416a25d *R/models_zeroinfl.R
8d27e61ceebfad0c88bde9ea3edeacf4 *R/one2OneRnaMiRNA.R
775137805c4189369a601ead1dc69e4a *R/one2manySponge.R
a35b89df429d10babced53c73670c23d *R/plotFit.R
4a7e4a52460b54d6d0dbaf6aa0685bcd *R/plotResiduals.R
51ebb0c36cfbbd22a69346f10182036b *R/plotTerms.R
e74a66a638dddd452f479b83a85fa0f4 *R/rsquRes.R
36c2a1ca64ee87a60a69c6cc99a0cc0c *R/runAllMirnaModels.R
6c911b2de09aeabc11062c2858d50ae4 *R/runModels.R
96a40dbf4b43e8fe71cd81cbe7e6fd80 *R/sampCorRnaMirna.R
d3a1bf2ef44fa0133da10c3f1c0718a3 *R/sponge.R
6ef2d174902fa39380475efab229ca8b *R/threshSig.R
3c22cfac9b0e6631fd11b2eb136f4af0 *R/threshSigInter.R
a1dc8c41b39f8ed5f106320e76c5edab *R/twoTimePoint.R
0e0d87673a50a1c1e7ffae74146ed7b2 *R/twoTimePointSamp.R
be03b94d99fb865fe29fc9abb916c4e9 *R/tzTrans.R
f1a2b4a85c0dd817f15b0dbc274438b6 *R/zzz.R
ee23da342368ecc8823d6e58cfe7bd36 *README.md
2e2bf47d5ae0e2a45fa4001e53f6254a *build/vignette.rds
8d6db619653159c87c1a3219f90d73a0 *data/Combine.rda
bc4d210f733ba4380cf5878a8174308d *data/corr_0.rda
2078ea47cfcc9190c5680442eafd3638 *data/final_results.rda
cf528e57f4e8ff8d71bba7089e7dd594 *data/geneVariant.rda
a898b899322951efa6ce06aba0f1095d *data/inter0.rda
4bc45d910076c4ae48ff4d170c7c9c92 *data/mRNA.rda
0f8dde9af8153919c644e9037e67fb09 *data/mRNA0_2.rda
f0a867dd101464c1bffcf62bfc2f5721 *data/mRNA0_5.rda
e2279ef7264af618dc3bbfade432aab6 *data/mRNA2_5.rda
b871fa7279991e2c44cd8613f2451110 *data/mRNA_fc.rda
48069aa499021e3370efc6a12a74a15f *data/mRNA_fc2.rda
4eafa9aeae769e4bbb52654d59c7afd3 *data/miRNA.rda
5f31061b25c4f60ec5dba0b31f981767 *data/miRNA0_2.rda
8f14dc12e880b9ba5c66aa7a7f1db574 *data/miRNA0_5.rda
1bfa7ea981fdaf0abd87fffea89edadf *data/miRNA2_5.rda
d09474e5cdb8cf7ad7ff305f7c5f5884 *data/miRNA_fc.rda
0cd7ee3277117f7beec9a11433c0813d *data/miRNA_fc2.rda
a6cf57fc5b7d2190626abe4534b29d8d *data/miRanda.rda
99d757ba1bbbb88ca63930062dc0a8a9 *data/miRandaM.rda
f5d7abb258273a073c99947600efcd3a *data/outs.rda
aceb99e8ab756083d3f1cc65d16af442 *data/outs2.rda
c2f6d1b896c4934ecb578a673fed78ed *data/results.rda
5d817aef91c7099d74f9710669e7efd1 *data/sig_InterR.rda
94b94bd393abe5f9183d73be4d8ed6fe *data/sig_corrs.rda
4f11bef04b8500be00f2f7756c44f9bd *data/some_model.rda
0ee4283df797dc80ef1836f14f26bca9 *inst/doc/mirTarRnaSeq.R
e880f91161d737e9c4165ef47b83b644 *inst/doc/mirTarRnaSeq.Rmd
2792111bd5cc10c5983a47b65098db4d *inst/doc/mirTarRnaSeq.pdf
c659616b823c24adf65825ab5b9cd51f *inst/extdata/miRandaPrepFiles/Epstein_Barr_miRanda.txt.gz
04a34e8bc99ef7aab1fc26a089e70239 *inst/extdata/test/EBV_mRNA.txt.gz
f4a0cb110d7892eb3389bf5b4c02cbda *inst/extdata/test/EBV_miRNA.txt.gz
e8f93e57ae07c928d6d41566c197237b *inst/extdata/test/mRNA0_2.txt.gz
16ad0076212bfa60755bb62c7a241e78 *inst/extdata/test/mRNA0_5.txt.gz
347b7e4cb34094075be7ba13bce35bce *inst/extdata/test/mRNA2_5.txt.gz
6646eadb3f9af07b31157415c50bc717 *inst/extdata/test/miRNA0_2.txt.gz
c162bb0bea3d66cb32b21f87a91706d2 *inst/extdata/test/miRNA0_5.txt.gz
7b4a392e6a8fa325f27315357fcd5ff6 *inst/extdata/test/miRNA2_5.txt.gz
15b7805ef7cbce83c19af40fd80447f1 *man/Combine.Rd
90e3a7649f1a86f0ca69c165eb1b6aa2 *man/canonicalModel_.Rd
dca88ec050af34472d07ff89f3a40bc9 *man/combiner.Rd
d7e3988c85397f5a2257f54f5b951d06 *man/corMirnaRna.Rd
1c2eb8902e0eab43fe9ac9c48e2b73f1 *man/corMirnaRnaMiranda.Rd
782031c6fa5e1050711f13a6e2d642fd *man/corr_0.Rd
6116bfafea216345d191df610a752f6a *man/downloadMirandaFile.Rd
7c18467fc73a1b672aa9944c739d50d4 *man/drawCorPlot.Rd
57d1637dd29da37b229ad1fd1b98c52c *man/drawInterPlots.Rd
6e7b53ebe7643ad8358272f15a587eb0 *man/fdrSig.Rd
4e0390499711f42691132b4634bff2c0 *man/figures/logo.png
69ee607c1535a555c1fcbd756474dd24 *man/finInterResult.Rd
87b36ee92e634b45a113987cc97d3d08 *man/final_results.Rd
05ea5f8f44b7d90420d166fbe359d97c *man/geneVari.Rd
d460e978d9263c3f39cd9469254c5db4 *man/geneVariant.Rd
ca857bbd79ac9fe7e86251f07705ca3a *man/getInputSpecies.Rd
ed80df162ffcb9b3ed1b26531caeac64 *man/glm_gaussian.Rd
741273644a3c756d3d9697f6df7ba9e8 *man/glm_multi.Rd
8bec725b4e25f6735872b2d43bbc4e1a *man/glm_nb.Rd
981a1bc1c2777516fbb3dbbc91b0b788 *man/glm_poisson.Rd
7bef9ad3f2b4bf4db963eebd30b78e5c *man/glm_zeroinfl.Rd
440eb3284d67865d4581e122255430d5 *man/glm_zeroinfl_negbin.Rd
c698e092c993657733a88bae3c234a1e *man/glm_zeroinfl_poisson.Rd
ee3e1048cbd4f52fa157c28bdb29ad58 *man/importMirandaFile.Rd
600ee89cafe5306eec477b4439a8bb0d *man/inter0.Rd
7823c0487d9eaaa1ab27cd1e27502841 *man/mRNA.Rd
e178004dfbfe44888645364685b3bba6 *man/mRNA0_2.Rd
bece7805292f740b0aa864af8fbcee8d *man/mRNA0_5.Rd
1eee23e2ca4a5c58ffa6490847d26e6d *man/mRNA2_5.Rd
ee8818eaf7c765b2bc11b8c54562808f *man/mRNA_fc.Rd
edd432c50b26e2c35f24131079ad9223 *man/mRNA_fc2.Rd
a1a778ff90c33337e0fefb51c633d949 *man/makeFormulaRightSide.Rd
d6664351b06b85344e4dc8fe57a09f68 *man/miRNA.Rd
01a2527571f0f5095ea57277659d98bd *man/miRNA0_2.Rd
3d9b54484c771c16aebbee75eeb90a29 *man/miRNA0_5.Rd
8737f9b86ca78040cdffb07df7722d84 *man/miRNA2_5.Rd
a8d342f1134c877d65cd825f45a8e5f6 *man/miRNA_fc.Rd
f9349799a9bbdb4732ddfbc575e746e1 *man/miRNA_fc2.Rd
df9826ddad86e072b39a5c9f9297221a *man/miRanComp.Rd
813e66494d8705ae4c050d825349daec *man/miRanda.Rd
5a6d2f8d5fe61207370a9b763e4ce546 *man/miRandaIntersect.Rd
98f95e767225f2d3d6730eb83d3c0f39 *man/miRandaM.Rd
5b38043233ec387e923a86c5fc8f0559 *man/mirRnaDensityCor.Rd
1f588fcb246d6ec539b31bfdc5a23c61 *man/mirRnaDensityInter.Rd
45090b79654f7d3fa02c8ac61de8b407 *man/mirRnaHeatmap.Rd
872c649456a31900edae6827ace3b57b *man/mirRnaHeatmapDiff.Rd
d0f6e4196a587a4153e621de4d3ccf9c *man/mirandaIntersectInter.Rd
859314258be8c104f7f44296482f85f7 *man/miranda_sponge_predict.Rd
f546833bdbca468cf2cc88b215e85103 *man/modelAIC.Rd
273e300554301d7850268e40126b7a81 *man/modelCoefficients.Rd
5299e9eb96a1d684a8051854066916e0 *man/modelData.Rd
27ba4a1334f215f04ad62ba4cda2bfac *man/modelModelName.Rd
762afa5b35974222bf370ba466640c4e *man/modelModelPvalue.Rd
d43d5822be3892091f043160aeca39cc *man/modelTermPvalues.Rd
94da60cd02954cebc2361cdc8c35c6c9 *man/modelsFilter.Rd
2b80cdd7560e1e05f2c66c5282108acb *man/one2OneRnaMiRNA.Rd
668fb5b2d3c7355bca7b522a31e3d010 *man/one2manySponge.Rd
bf87ad512bd56e8aba535791d540bcdb *man/outs.Rd
474e05a741348aeb783c682c74fa0538 *man/outs2.Rd
a4fe256b28013617392392f4d4a537f0 *man/plotFit.Rd
5f831a544ea41c673fd4e6ec558191a4 *man/plotResiduals.Rd
0d3af1409c85fc748e82e06ea094c5a0 *man/plotTerms.Rd
d7b3467a69e29a8aa3ba89e8bb0cbecf *man/results.Rd
2df45b3d2ecbe81f6e3ced39f917a34e *man/runAllMirnaModels.Rd
bf91318bf510beee6c3b405a879b9510 *man/runModel.Rd
29be4bd632de7cc02919fd03dcc265f9 *man/runModels.Rd
764cf7cfc0739b0b27b8cd84a2a9cf21 *man/sampCorRnaMirna.Rd
5e21041d7586741de96cdbe33704e973 *man/sig_InterR.Rd
d91e554ad779b567cb0312948cceac80 *man/sig_corrs.Rd
f8ee4960c571632a4d972f241be99685 *man/some_model.Rd
89c14b18181d67d102fc89886c7ddcbe *man/threshSig.Rd
2574468ab93d6031e172c5e0117e6c41 *man/threshSigInter.Rd
6f8503c4ce9705c66ab0ec59d4b825e9 *man/twoTimePoint.Rd
154c7f72404ced9d34050d1014942130 *man/twoTimePointSamp.Rd
f1814ba88168b049d4194b4e1dd950fa *man/tzTrans.Rd
e880f91161d737e9c4165ef47b83b644 *vignettes/mirTarRnaSeq.Rmd
