007e22c3cab32a6fb500bb9fe6bfa072 *CHANGES
578df58bc674227717851b002aa852e9 *DESCRIPTION
bec490749735787cd71ef8c1c727fa1f *NAMESPACE
b31fd38c27ca197cbf9f163bd730df8c *R/MgsaGoSets-class.R
17030708af5fc95ac14d9e40c50c40fe *R/MgsaResults-class.R
7a12a6730ded54ff171177e7d1f8a96c *R/MgsaSets-class.R
a19ee11ebd50a51369bc79038aaa83bc *R/dottedTable.R
cb278748651f600942315512fda1a21e *R/mgsa-methods.R
78b3869cba87a4bd9b8e5c467263cf3e *R/mgsa-package.R
0b2a3d2c35f0314a80984212ae2abfc9 *R/zzz.R
8e9d2cfc24939ba544dfc000ea42194d *README.md
b2b64d833ce554de266797f6d14c139e *acinclude.m4
d2619cb48e498ffe18cdbe8d137999bb *aclocal.m4
019c1908e671b2ee11fff4c75d4c096c *build/vignette.rds
b2e34483e37c2552dbd286c4dcce70b5 *cleanup
cdd4397105e48eaee3a37e475cd83e5e *configure
c3838a88129d8f7da5740c3b32818b69 *configure.ac
ce7e373f09335e5aa4c1ea7e5b878c74 *data/example.rda
961adafd87cfeb40f0425a7e2792261d *inst/doc/mgsa.R
c2ef89d99d454b2d6e7bf119e53d0d92 *inst/doc/mgsa.Rnw
deb0c57376c59b2ddb99d57920fdd38a *inst/doc/mgsa.pdf
ca50bca65167232a695f63d89895dc4c *inst/example_files/gene_association_head.sgd
1f171caa3cf0e4a7d2f12ae8a140a52e *man/MgsaGoSets-class.Rd
370dffddcfb40cdc84b9a14d1a1c40e2 *man/MgsaMcmcResults-class.Rd
3ebc3a11f4fdb02059cbb0c44300cbd3 *man/MgsaResults-class.Rd
8abf2bd65c11b05eb94f5d7daf222bec *man/MgsaSets-class.Rd
ac4e1a95af458209c5d68eaf4ee5d9d5 *man/alphaMcmcPost-methods.Rd
9362fa2413dd79d04c5975ea2789bcc4 *man/alphaPost-methods.Rd
319e08271ae12b4ffad71e0ecb7ca46b *man/betaMcmcPost-methods.Rd
761a0731d1efd604c7ba7286bbd0b74f *man/betaPost-methods.Rd
346c8e6c10ba8e2e5a77e8dbad7f156f *man/createMgsaGoSets.Rd
bcef3c9acd5b6a10f6e6341e3fd5a476 *man/example-go.Rd
083d6b174cb968b07f45ea8cace61b0c *man/example-o.Rd
344b8bb77358f6f654b5fb9c9b6d178c *man/itemAnnotations-methods.Rd
4708ad843f83eb7aba65b06169f257cc *man/itemIndices-methods.Rd
d7d53b9530506505b854fc02dd93cba4 *man/length-methods.Rd
bc4f659baa9d56c33a28df92b32d1746 *man/mgsa-methods.Rd
b26e7f2c104dc29f59aa1a17bb7e81cb *man/mgsa-package.Rd
fd6e5046c269989cc9ee78f8971b20a2 *man/nsamples-methods.Rd
6bb8b5ce19d44aa3cf96c3523c7083b3 *man/pMcmcPost-methods.Rd
da0d7f3c8578b3946d36ec60eea63a55 *man/pPost-methods.Rd
7a223c5f8394ad09ca275b44845952a0 *man/plot-MgsaResults-method.Rd
62c42be6fa2d23168be0af762364696d *man/populationSize-methods.Rd
6bc62a8d3cea023c7e00192f268acf72 *man/readGAF.Rd
11d0bbe366d5c2140a23a86293c507c6 *man/restarts-methods.Rd
3081b8cd5c82e8ae89e79d6d4eba1566 *man/setAnnotations-methods.Rd
3499f893559cb1861f05ad9d9f030a1f *man/setsMcmcPost-methods.Rd
31d9713d9214493c499dc1abfdfb9cbb *man/setsResults-methods.Rd
1552159449a10878899b067cffe7ef33 *man/show-MgsaResults-method.Rd
1a5afbc058a32b9f58bafea28ca6b22a *man/show-MgsaSets-method.Rd
958d3d6e8e72c4113e914e0d90b9e68a *man/steps-methods.Rd
e3cf09f64ffbaf480652922498a851ba *man/studySetSizeInPopulation-methods.Rd
3eaa533645de31fa1cd24ba81214b3a6 *man/subMgsaSets-methods.Rd
a71794e9528f5ee9d8cd5df404e33904 *script/README
a2220ee94c90515b95f41b51050f3d50 *script/TODO
ed405d3474bb47e5b403638a05b801ac *script/buildman.sh
b1b407db6a6f68e34c2feaa85c426266 *script/demo.R
0f5b539a05beb2b103636365c12196da *script/test.R
3539114f08dc20729e8903cb0393837a *script/test2.R
6cce6f55ce3b62b418e1972b11345fd8 *script/test_GO.R
92f7dbb7c39cdd0cb87c513049866f08 *script/test_signature.R
6adb6b096401cbfa70eeb86021a8a4f9 *script/vignette_quick_example.R
ba2686d5da7451889096f9b1fdcf828a *src/Makevars.in
ba33cdbc6a2709a0f3f855589802cfea *src/mgsa-core.c
24fa81aa76ffdd3283f4ab02a28cc79c *src/mgsa-core.h
9f51533126239053ce779955bbdc110a *src/mgsa.c
5c9effff5472c05b386651887c64e75c *src/mt.c
a2c9376700b693185f0c731f1c72eaf8 *src/mt.h
803ddaf89d92fa32e94efbabd1836846 *src/mt19937p/example-mt.c
dbc29219de0cdf6403c198715ae5d091 *src/mt19937p/mt19937p.c
98518ea27ac981c2054f333388399194 *src/mt19937p/mt19937p.h
297f023d767ee5a88a7998eb71a34dfc *tests/testthat.R
011f53a02835c2c5d4eac51ab96bf5e5 *tests/testthat/gene_association_head.goa_ref_human.gz
65dec6bd6673d6bc26a4b7dbe9ffa0fe *tests/testthat/test-mgsa.R
56932ca0a9e0b046ff47eedd079eb44b *tests/testthat/test-readGAF.R
a2a9cba63b74265d385785a069dd11f6 *tests/testthat/test-subMgsaSets.R
c2ef89d99d454b2d6e7bf119e53d0d92 *vignettes/mgsa.Rnw
