a35ee83d2fad12b36f0a1aee2a86eee0 *DESCRIPTION
7c9fd80a527ff017b69cdbb7cee04b3f *NAMESPACE
daf197093573577096f2fc71d5b90048 *NEWS
9a398ca8f5b102ab9d806a601f9f6e62 *R/RcppExports.R
cb372092a82a3855a8776509e79b515a *R/addColumns.R
fae20bf0da857b85dae19bfeabaecc11 *R/binMethylome.R
c46298c81cf10700778b60dfd0cea2d3 *R/callMethylation.R
9794ffa98a6ded0af2121c3c33c4f7a1 *R/checkUserInput.R
dad10d23471f1eaca0ff503e34901c1c *R/collapseBins.R
c65801105f1d9f108b082dc3c34567ff *R/correlation.R
563ae2fc04b32fc68a53b86011cde38e *R/distributions.R
f9a413dbb17943fa00c302fc7e1c4026 *R/documented_objects.R
fb9a385824aaa92cb14f420032b8720b *R/export.R
0066a10d2163abbbda35c32f921e539d *R/extractCytosinesFromFASTA.R
bb7feee464a2b52983ff4f98677f2370 *R/getDistinctColors.R
6bd8b4c45be37c81a50ec6d61b2854c0 *R/getPosteriors.R
f2773253006536487871e8bd54ca8278 *R/global.R
54a2412bb9f24e70c7c55fd61d2891a8 *R/importData.R
82786f7213a308ab738efcfb8af43882 *R/inflateMethylome.R
774635ccaf66cbcee2e101d3069461aa *R/loadFromFiles.R
006c3739761cc1b17da1c99c2672f312 *R/methimpute-package.R
f81a2543836d5e9cc81557ded63f0102 *R/parameterScan.R
55205de1ff8bab07f51da2c1e956bf4b *R/permute.R
250dbaf41fd47e4d4f2ad633526a2ce4 *R/plotting.R
e0a9aa9f4950c16f4002a63eee56a357 *R/printMethods.R
ae9de9911f834b49fdf071dd288994f6 *R/timedMessage.R
e5c740b4cc93ea1d1e54d53d3cc9596c *README.md
2e1438e7057e2e48337eadb34d86fb1c *build/vignette.rds
05481ad42e984e0d4f71e8303d6ad682 *data/arabidopsis_TEs.RData
7394772588201a8e1c5e6410429f22c4 *data/arabidopsis_chromosomes.RData
05c7f6e1e17e0e548db5e137d649c636 *data/arabidopsis_genes.RData
e2cd7f1c9427adef2349b57e8b1a35a7 *data/arabidopsis_toydata.RData
bf29333345a27a27b5db2e79c184171a *inst/CITATION
bb58de92617384d812dc29a9db2f7625 *inst/doc/methimpute.R
7c998848932f4f20f7c9aca32cc9555b *inst/doc/methimpute.Rnw
084819fce314b56c7dc2a8740a043af1 *inst/doc/methimpute.pdf
9d0b77b1f7670bfbe61935ed67a6aa64 *inst/extdata/arabidopsis_BSMAP.txt
60219e7b83b8ee6ec130e4afb14fd43a *inst/extdata/arabidopsis_bismark.txt
f85ab993149cacd1c0ae25451f41d0c8 *inst/extdata/arabidopsis_bsseeker.txt.gz
fbbbb78434234d812858bd200771e438 *inst/extdata/arabidopsis_methylpy.txt
931b6241da6406b00cb1863722c30482 *inst/extdata/arabidopsis_rene.txt
fd76b9dd8664d0f57812e01fb6f2327d *inst/extdata/arabidopsis_sequence.fa.gz
76f70dd83f24ddd0082c1948f300d38f *man/arabidopsis_TEs.Rd
07f7ddafe66affa68bdf0cd01e27c2a3 *man/arabidopsis_chromosomes.Rd
d63e6e37b58b2de8fd8901ae46851ff4 *man/arabidopsis_genes.Rd
6e5639d8f832fe7c317a3308fccf2c78 *man/arabidopsis_toydata.Rd
af20aabd2d4451327ba6f8a345998b1f *man/binning.Rd
7a01b6b7e48d90b33dd7ec067b522bae *man/binomialTestMethylation.Rd
1b6b55e79d05a76edf20569a5aa8e35f *man/callMethylation.Rd
921cdf0a6cc3934beac0b4ee20533eb8 *man/callMethylationSeparate.Rd
47d1b89f8858b9196f0b912a30c17b0e *man/collapseBins.Rd
d7e9212cea3d00f145a1c58c75241f36 *man/distanceCorrelation.Rd
50169c1f58a3eddded7901b2311c0078 *man/estimateTransDist.Rd
4287f9abc6c6325d11901c8d57e42433 *man/exportMethylome.Rd
e11bd5606778e0051188e421190ef514 *man/extractCytosinesFromFASTA.Rd
dc0bcf1f8dc6dcbced9fe9ac7f18970d *man/getDistinctColors.Rd
7e830980023beba869b5fb698d00db1f *man/getPosteriors.Rd
d0ff8c4fde7a57dfa0a0e9c942827ab4 *man/getStateColors.Rd
d6c4e660c3b60ccd9d52323eb5fc93ba *man/import.Rd
ceaec19ea7fe10d5df593fcb1917a77a *man/importRene.Rd
ea509389808734bcad9c52dc36555027 *man/inflateMethylome.Rd
ad7d1ac6ce5af5046cdee999e21fc136 *man/loadFromFiles.Rd
9f35e17c65309141239104f4ea66a881 *man/methimpute-objects.Rd
891c17d9093e45042447604e8e89ea84 *man/methimpute-package.Rd
e6ef6477c35818c2f82679476786c9f1 *man/methimputeBinomialHMM.Rd
ff24d520b4d2466d1fce42b6dd8ae23a *man/methimputeData.Rd
c96ba1145232ee2731a21d3621c60114 *man/parameterScan.Rd
7b5fe843f01c6a64f1a41a84b51d0cfd *man/plotting.Rd
ea5c51678fa5db38585f1cf459911392 *man/print.methimputeBinomialHMM.Rd
6cb81cd168220fbdd2bfb4f314e09058 *man/transCoord.Rd
fbf6a81f85813dd0255ac8c99e00bb36 *methimpute.Rproj
4e9927c00d9401285cde84ad9db2dd4c *src/Makevars
4e9927c00d9401285cde84ad9db2dd4c *src/Makevars.win
2471cf8fdb1d0e64d3035e5b330d48c7 *src/RcppExports.cpp
9e90cf015ae30ad6b71cd3c10d86aca5 *src/densities.cpp
c3b3be7074fe3b33c243cf2456664736 *src/densities.h
2b96250439295f31c83d798a386f8702 *src/fitHMM.cpp
60aa46d758a5001dba42a184478840c6 *src/fitHMM_context.cpp
97e492691fdd20a464d9bdd24dd20266 *src/hmm_context.cpp
2d410efb318e0ea392bf53ef65d466d7 *src/hmm_context.h
4d96eb1ce384ee9b824550c40ba9e951 *src/methimpute_init.c
1bccd6eb47b152b863cc270b40c11fc9 *src/scalehmm.cpp
08976046cad4a470e4d0f121f766855b *src/scalehmm.h
7c998848932f4f20f7c9aca32cc9555b *vignettes/methimpute.Rnw
