57fc232daef671afae445da772f5b5cc *DESCRIPTION
ded9baffb471978b8d9149bd419bd024 *NAMESPACE
10cf270058446065d94bbd9d6f1d3309 *R/methInheritSim.R
e18b54ab3b3b1b3ed1a0ce29331caf94 *R/methylInheritanceSimInternalMethods.R
22b439e31fffafac2f63de95ff833fcd *R/methylInheritanceSimMethodsNew.R
faecf68d2be96b940b8e88cc5f0c80fc *README
1df996604efabb98a42390efe4f68ea4 *README.md
02cc278c85e312124d3fc91428f4b909 *build/vignette.rds
c3704c27495d3988eac314e1a5ca3bc8 *data/dataSimExample.RData
94880e31c031c451c26fbe46ddd434b2 *data/samplesForChrSynthetic.RData
7644644423f66b6c75c9d5a0252a4ee7 *inst/CITATION
d251217eccc8658cdf1b023d92cd1a7a *inst/NEWS
e4bb2560930168ee01a33a81d9861beb *inst/doc/methInheritSim.R
7faeb0e0d28e5278763271fe00fe775f *inst/doc/methInheritSim.Rmd
2fdd9b671776b47411b6fac0e0e288dc *inst/doc/methInheritSim.html
dcd5d50e181bade4b6d4ab6a67048aa4 *inst/unitTests/test_methylInheritanceSimInternalMethods.R
58117c6103b62714ad6d59cd3358194a *inst/unitTests/test_methylInheritanceSimMethods.R
62966ee58377a561b635ee691a2958d5 *man/calculateNbDiffCase.Rd
f5970936aaa913bec12784c39567f3e3 *man/createSampleID.Rd
87174e4c9cb355613ef7cb9643d14f10 *man/dataSimExample.Rd
dede1b7a35585bc34016e48a471f9379 *man/estBetaAlpha.Rd
237f9c1d8e8e262778a7f9974a9be1d6 *man/estBetaBeta.Rd
e39f2872629cfd601e11b4e78802fa51 *man/fixSeed.Rd
34dc42f24a3935612759da85491fa469 *man/getDiffCase.Rd
ce27006bd69996f24015e18ad76a554d *man/getDiffMeth.Rd
06d87457618dbc943ca0b93cf4af784b *man/getSim.Rd
1ed21696b3bb326a41b4d204d0c06893 *man/getSyntheticChr.Rd
ab28d2d2eb0dc6472e032701389e27c3 *man/methInheritSim-package.Rd
a08abd43c2f01cddab50e488247ab1a3 *man/runOnEachSynCHR.Rd
db085d30496f4e07504d0db8d627639b *man/runSim.Rd
e7c8dc5a2ff994ce294ce78a2071fafe *man/samplesForChrSynthetic.Rd
0da514d8531978f4806715a0d48a8e69 *man/saveData.Rd
b63ec2b9aa6226c1f5668d684e8726d6 *man/simEachGeneration.Rd
42ac752c5576f3d0b3b9e8d066d7ac31 *man/simInheritance.Rd
5a61e96d7139e3a719bd665413b22a8d *man/testIfAlreadyDone.Rd
bc7194be6d999326454d16a9abc66b51 *man/validateRunSimDoubleParameters.Rd
5a7b183f56419a96ccbc60c2b546199d *man/validateRunSimIntegerParameters.Rd
3c569bc7cae3980efc49d4ecf4190ce6 *man/validateRunSimLogicalParameters.Rd
70a6f89ee11c84f16983a79ee1860f7d *man/validateRunSimOtherParameters.Rd
e1993213d8f49a236f72bb7b36ed20c4 *man/validateRunSimParameters.Rd
6b65c82b5c90d9f9bd94c1434416038f *methInheritSim.Rproj
c35b46ba38eded80b62363d4083eccee *tests/runTests.R
92b362d0ead378d1e0915e4fd1fbc23e *vignettes/demo_runSim/methDiff_S1_1_3_0.9_0.8_0.5_1.rds
53c1c68b74835beabe7cbf172dc3724b *vignettes/demo_runSim/methDiff_S1_1_3_0.9_0.8_0.5_2.rds
225175eb0b5a54842ce7aaada142f38a *vignettes/demo_runSim/methDiff_S1_1_6_0.9_0.8_0.5_1.rds
1761d0c064656acd86fe57eb7a486a1f *vignettes/demo_runSim/methDiff_S1_1_6_0.9_0.8_0.5_2.rds
2a729caa02ff615de75c36b2b55cbea3 *vignettes/demo_runSim/meth_S1_1_3_0.9_0.8_0.5_1.rds
6b0cf21f5091edbb8cd96bf0c1b9e2bd *vignettes/demo_runSim/meth_S1_1_3_0.9_0.8_0.5_2.rds
9032bbf0122b03333c70badb442ec06f *vignettes/demo_runSim/meth_S1_1_6_0.9_0.8_0.5_1.rds
0cc24cfb06066e531e794ce3505e0050 *vignettes/demo_runSim/meth_S1_1_6_0.9_0.8_0.5_2.rds
8e1c44ac8377b79a8b438d80b05f9eea *vignettes/demo_runSim/methylGR_S1_1_3_0.9_0.8_0.5_1.rds
6bb19d54a2bd3668b92f48ef59be391f *vignettes/demo_runSim/methylGR_S1_1_3_0.9_0.8_0.5_2.rds
f5aa71621327719800180f8e9a5e95c5 *vignettes/demo_runSim/methylGR_S1_1_6_0.9_0.8_0.5_1.rds
457f3f55216cdc58e77d732797f82698 *vignettes/demo_runSim/methylGR_S1_1_6_0.9_0.8_0.5_2.rds
9df3d29bb6d19d282378299ed0b358f0 *vignettes/demo_runSim/methylObj_S1_1_3_0.9_0.8_0.5_1.rds
2254aef4eaa787132420987b71c133d7 *vignettes/demo_runSim/methylObj_S1_1_3_0.9_0.8_0.5_2.rds
44df0d08abef856624e77ea22765f0a5 *vignettes/demo_runSim/methylObj_S1_1_6_0.9_0.8_0.5_1.rds
8a28115c6c1c692f91a8f10e263f6471 *vignettes/demo_runSim/methylObj_S1_1_6_0.9_0.8_0.5_2.rds
8732666131a98e2fdf84693d28647958 *vignettes/demo_runSim/simData_S1_1_3_0.9_0.8_0.5_1.rds
b972c05b09e7ffecdfbd7d4f1d8f3eb1 *vignettes/demo_runSim/simData_S1_1_3_0.9_0.8_0.5_2.rds
12aee17ba12d4faf6563deaab94abbe0 *vignettes/demo_runSim/simData_S1_1_6_0.9_0.8_0.5_1.rds
ced32a0417e18ee1dff7e7113e594c22 *vignettes/demo_runSim/simData_S1_1_6_0.9_0.8_0.5_2.rds
6805c266453fcf9b2d3343064b0c07d2 *vignettes/demo_runSim/stateDiff_S1_1_3_0.9_0.8_0.5_1.rds
8b9117713bc38136f8f1ca84e3b02152 *vignettes/demo_runSim/stateDiff_S1_1_3_0.9_0.8_0.5_2.rds
f6d57559bd46022c6be12c7630f98d65 *vignettes/demo_runSim/stateDiff_S1_1_6_0.9_0.8_0.5_1.rds
673bde007e9b2faf681ba37ba85e4dfe *vignettes/demo_runSim/stateDiff_S1_1_6_0.9_0.8_0.5_2.rds
690e3353d3478a544821715dec42fdc5 *vignettes/demo_runSim/syntheticChr_S1_1.rds
85cefb02b72f81ca9b4623a72972cba4 *vignettes/demo_runSim/treatment_S1_1_3.rds
b5c1c917cfbc8a6c7dd22cbe4ceb86a8 *vignettes/demo_runSim/treatment_S1_1_6.rds
7faeb0e0d28e5278763271fe00fe775f *vignettes/methInheritSim.Rmd
4d1c722d48886b73d30a393ad6a3dab3 *vignettes/syntheticChr.png
