d8feaf49126a3fc090a35dce94b412a7 *DESCRIPTION
8c4797180ac87d0b4261cdc422ab7884 *NAMESPACE
82b665d73f5ae2fc92087ca93161a3cd *NEWS.md
5bb6e4135eab6e16891658fa6d69809a *R/af.R
b45f98141df35648953ab887368cb2ff *R/af_cap.R
047694b931e676401872a868474e7493 *R/af_snp.R
c84c083825da9df5ec468c62046e8e2b *R/center.R
851105b1277c123f340b1fae8cdad953 *R/centerscale.R
5d51ea249b98018b30b517a606419097 *R/check_geno.R
87e4be104736618cd070503cc9f57927 *R/compute_nulls.R
dea26da82bda42f9af6acffe552fd5b2 *R/convtests.R
1035defd793be9dcd21ec63a1e69b63b *R/covar_BEDMatrix.R
efe25e11d25c48b955e9d06c85dcdfc6 *R/covar_basic.R
f1db02a97be878beccb886b8115b2ac1 *R/covar_logit_BEDMatrix.R
f03d92ee2b0948b3c009e0a5cc3df9fb *R/covar_logit_basic.R
5fe07ad7e78b96a4fda68ea23112acaa *R/data.R
004a71150bbd0cd4bf3e1d2e69e6cbf7 *R/gof_stat.R
243605249abdf4be911d63fa86b67a10 *R/gof_stat_snp.R
0540bc9f292e7d5f8cf4535439cd7f55 *R/lfa-deprecated.R
0a90bd7fdd42ef4fdab5e2ef5bc69113 *R/lfa.R
65fe4840f9625fc31b370b4427a11bbc *R/lfa_BEDMatrix.R
3202f8525b97f39fdbcd051491826047 *R/lfa_matrix.R
2b50cd4c9d96fc57f2c8408868ec2133 *R/lreg.R
73543571d85d3a1c63817c5ec7874d4f *R/model.gof.R
392419f4320984a5a04031c51ed542ef *R/pca_af.R
ef6d335da7ca269e640182f0a44fb234 *R/pca_af_BEDMatrix.R
81912f6f904ba4aee4112e9f35ae9b3e *R/pvals_empir.R
9087a541cd845cec3093bfe1b447a9bd *R/pvals_empir_brute.R
7b72317f5fd424f047c6233ab896761d *R/read.bed.R
a8db977f0ed46ff0b5bebc0653163268 *R/read.tped.recode.R
ef7db151a71920498ab7660b2e57a42d *R/sHWE.R
17f7ec6ab6bd91d34af7d0c179a38f50 *R/trunc_svd.R
82a1458d44bd71ae9e3116af53c06064 *README.md
1bf18d9c216b8d95033f0bd2fe2906b2 *build/partial.rdb
a6d8ecef4d8435ba69da4151b600379e *build/vignette.rds
478178e9faea76754aa105e791d170ef *data/hgdp_subset.rda
622007efd830ab39c6c12c779d562e36 *inst/CITATION
d83d6cf6e2fb0cd3b0dcf123ba1237fb *inst/doc/lfa.R
244487ded34ac0e525c1bf4d8507dd3b *inst/doc/lfa.Rnw
371e0c7e7f2b826465c573ae1e824458 *inst/doc/lfa.pdf
70afdded179a5330f77e56feefa442d6 *man/af.Rd
69a495d7880d5107b7bb7f05e15ae91e *man/af_snp.Rd
cc01259c4e417eb5e4753fc466e0722b *man/center-deprecated.Rd
09e78f5903237a9d9ba9d540191f5251 *man/centerscale.Rd
0f35d3216bb2f63b56098b69ca5cdbe1 *man/hgdp_subset.Rd
41055273d7b0d1847a7cbe127d755fec *man/lfa-deprecated.Rd
ca6673481cb7f95a1931ca6f6dfce42b *man/lfa.Rd
55fb0f67dbe7a71317f22ec0c63656f0 *man/model.gof-deprecated.Rd
85295c825e290270baa68c96938a1137 *man/pca_af.Rd
03bc543fde81eb291890d19333c0eaf2 *man/read.bed-deprecated.Rd
26f4fb2927a32f0f751c361105eecaf8 *man/read.tped.recode-deprecated.Rd
4edd101589a254a2750678c43cf7a445 *man/sHWE.Rd
c30cb4a6fe056dd9ee756f63c4fd2b60 *man/trunc_svd.Rd
c8556a2922755d082a145709068435bd *src/Makevars
cc0f4b0c7d9decac0b4eff1436ea08ca *src/fastmat.c
d073c145cf9cdf10335ff38a4c38181b *src/lfa-init.c
6cc732374e5c730ba190c61f334f1cfd *src/lfa.c
1bf82dc27f57b6244682013b9e3c9bdf *src/lfa.h
c6303deb00c74bc071516c17a381db3c *src/lreg.c
90bfc391750ae193329303b87d83f8c2 *tests/testthat.R
898b22f229d7d67063602d1afbc5465d *tests/testthat/test-lfa.R
244487ded34ac0e525c1bf4d8507dd3b *vignettes/lfa.Rnw
8c0a739758ceec032125005078d43fa1 *vignettes/lfa.bib
