247497931ca89f9f6e96e6d1a24717c8 *DESCRIPTION
046805362c103ed18822cc28d6a8dccc *NAMESPACE
aea936b63c137979b3bb53f63926f5f9 *NEWS
8c9d14ad5dfe6b3e1686f6600c66da8f *R/color.R
45a4fa21e5aa1a52a4983075d38f7ca6 *R/genes.R
f6bccb29fbfefdd4e274a2b7330536d4 *R/getChromosomeColors.R
3acb9101421346f52ec521c10c2fc7ef *R/getChromosomeNamesBoundingBox.R
264c087e664de1e82af4ada1f1181812 *R/getCoordChangeFunctions.R
675881361b74310800821d724112ee87 *R/getCytobandColors.R
99ee9ed8cd7e14641bb252672443dca5 *R/getCytobands.R
3070d831a21bcfddbb2c6124d326acf4 *R/getDataPanelBoundingBox.R
f92855686836b65cd156a1accb9c0c1f *R/getDefaultPlotParams.R
e056fb708fdbccdcbeb14ade1624197a *R/getMainTitleBoundingBox.R
0f97488ed13dd63e07512c2b1efc72d4 *R/getVariantsColors.R
54e3a2bd539efa690e518a3b763d412a *R/kpAbline.R
0b8199f30e13efc109d5453cf9079798 *R/kpAddBaseNumbers.R
e5383b2d3d7d3987c3cbacdba679cb55 *R/kpAddChromosomeNames.R
6c1cecd074b9c5339c193f4e58967f4f *R/kpAddChromosomeSeparators.R
1290e96c77b9e915af7c45715ea2be92 *R/kpAddColorRect.R
3e79b8eaff3829f7fa4121fbeb46dd32 *R/kpAddCytobandLabels.R
8e3c75bbc78166a05401f236cac2091e *R/kpAddCytobands.R
8a3d04ad23e38f94200e774cc51842a9 *R/kpAddCytobandsAsLine.R
adb7dce7696fe2e99261c45a774fa4c0 *R/kpAddLabels.R
072dbb4c06a4154e070737ad40aabcb9 *R/kpAddMainTitle.R
55308fcdf813f57b6857bb3cca4c178e *R/kpArea.R
c7c08b2f1c7fc12a5a7882a3e8bd7944 *R/kpArrows.R
05ea6c091d1010b1bd9eab651f2bb156 *R/kpAxis.R
d867d7e53755657b1b1109765859e784 *R/kpBars.R
71caea4977a9f137edbc8e785462b054 *R/kpDataBackground.R
2ad6ebf621d7f0d1f3736d1d60d8959e *R/kpHeatmap.R
0cef3780cce05d7a290c16500b9e64ff *R/kpLines.R
7608522bfbec0d586fe2b22af5c10d41 *R/kpPlot2Lines.R
6e6e900f9097a288db3c3ed43e2ea09d *R/kpPlotBAMCoverage.R
cef3ab4ec7697d952df2aa77d32babd8 *R/kpPlotBAMDensity.R
87e898f65e11946e420cc81352787392 *R/kpPlotBigWig.R
564bc970a6dfc9b10c9611aa26ee93e9 *R/kpPlotCoverage.R
2b62f626ad06593111c892172c576d39 *R/kpPlotDensity.R
044ef666f17af4f02c7a96c71a4c37b6 *R/kpPlotGenes.R
7d233e52076cd859365367f580ead405 *R/kpPlotHorizon.R
01af50bb2f85376a68c391f8fc3584b7 *R/kpPlotLinks.R
2c536361a60b81c4f074c1bdb0865dd8 *R/kpPlotLoess.R
c489196ee8dcd7745f99b3095f51e022 *R/kpPlotManhattan.R
5369e0458045343d21d10a7696bd01ce *R/kpPlotMarkers.R
8376e078e886eceb2d03b1a12ee28d51 *R/kpPlotNames.R
f219570f93a9283229462766fb280831 *R/kpPlotRainfall.R
b700f0577940d2c816485e0f2d7c175e *R/kpPlotRegions.R
c52e05d625e27c46056a6ce8504a34a7 *R/kpPlotRibbon.R
87c29cf2d0b9fdb03399be4a291a4326 *R/kpPlotTranscripts.R
8a5d25cc86e86c8762ee33b9f11879ab *R/kpPoints.R
f52e9b4378f17f21789a78e1efa5f2db *R/kpPolygon.R
2711612b0da0fa1ce58020cd195026dc *R/kpRect.R
2ec9305c943cf16b1946d3b2681d48f3 *R/kpSegments.R
fdd446a452466dc38e1ddde84695ad47 *R/kpText.R
96752efbd6ddf5a8748b9de52973de2f *R/plotDefaultPlotParams.R
22f1f2e13ad062c8b64347ae941c8d2b *R/plotKaryotype.R
28f2e122b5d771938f97e622681882cd *R/prepareParameters2.R
6b669c75bf34c3b6596dc47ea5a4f03a *R/prepareParameters4.R
2f102ca7b481e1088f15443281d808ad *R/sysdata.rda
b2a09badc2362b36939c4d1fe026252a *R/text.R
2e741865dca9c1816762a33ebe8060af *R/utils.R
87347432728b8d0f10fcfefa3511b9ee *R/zzz.R
43f31cbfe2ef81e8709381193e4e16be *README.md
ff14f7192bc6b3c7c38ce407e6254e20 *build/vignette.rds
8b8256ecdd84865aaf51b85a6a2bae7a *inst/CITATION
e3a97b98f36b2dc2f35076a84567aab2 *inst/doc/karyoploteR.R
14c902f9b690bf6e81d6684deb485b74 *inst/doc/karyoploteR.Rmd
e1f10348410828c067564dc373e7613c *inst/doc/karyoploteR.html
4d69c078bb6a2d998b08571781fbd1ee *inst/extdata/BRCA.genes.hg19.bw
7ac05ee905f2ba2fc10c45cf9ca998fe *inst/extdata/BRCA.genes.hg19.txt
92c5ebc4b89bd8854a2efa8e676a088f *man/addGeneNames.Rd
72141ac89dbeb3b78f0398b010903035 *man/autotrack.Rd
6682eda7a1b4c7b35d1b1391c69ae622 *man/colByCategory.Rd
4420403c7434faf74f34d4a9622e90f7 *man/colByChr.Rd
b3ed8034e94838f433fc956ef9d4eef2 *man/colByRegion.Rd
bd75f4cd53e12f2500af35a642b75379 *man/colByValue.Rd
a61e6d04c04249b877afb021a2e87315 *man/darker.Rd
17b34c12ac6023c697be26097104d645 *man/filterParams.Rd
344801d7485d4eab81f3b70716bc25f1 *man/findIntersections.Rd
a49abb0b54c384bebcc90b8674794bd2 *man/getChromosomeNamesBoundingBox.Rd
74e7529cdb769a3323ac070cfa875f4c *man/getColorSchemas.Rd
4ffa4a384057ab0e9cbfe5b871fee23d *man/getCytobandColors.Rd
6d440340bef48e1677f3915c14e3ddb3 *man/getCytobands.Rd
a2cbb423ae1d8326e112ad6cb9f7e2ee *man/getDataPanelBoundingBox.Rd
eb9d6b0ce4e9772cde7acf3fdc61f109 *man/getDefaultPlotParams.Rd
3df76bff4501984b20cb3a7516474de9 *man/getMainTitleBoundingBox.Rd
93f0d34708f7210c61a308fae2b2ce7a *man/getTextSize.Rd
7b91e91bab274828c6e2856382bb6a33 *man/getVariantsColors.Rd
53b8fe44d8c79f795aaa16c58af987c0 *man/horizonColors.Rd
810d880f4e121c426a26df1520f6fbd9 *man/is.color.Rd
f1a444193afaae2b869b124efdbf5fcc *man/kpAbline.Rd
34e96b3757940e2b78713dea7c53caf8 *man/kpAddBaseNumbers.Rd
69ea6b06a57cb9e2f95295eebc008223 *man/kpAddChromosomeNames.Rd
f6a4f9adb0d6de7994bbd2ff74f313a5 *man/kpAddChromosomeSeparators.Rd
438c7c4b11110864715ad577b38dca43 *man/kpAddColorRect.Rd
f19d24dbc69427515063e09882865314 *man/kpAddCytobandLabels.Rd
e46dad13f23310384a9820966c16a6e8 *man/kpAddCytobands.Rd
42f8a0889c6761d9bea1d0f5f54c7805 *man/kpAddCytobandsAsLine.Rd
4e9abdb757ce15256024a5e38aa3614f *man/kpAddLabels.Rd
a2a7f8ec7b19bc1c8899484e2f37319f *man/kpAddMainTitle.Rd
ef66a25c4b88de681bbd665d7c69cba9 *man/kpArea.Rd
726db7eadd6f7655a986a4f6c4531fdb *man/kpArrows.Rd
57dd37b050fa8a391444f53360344c98 *man/kpAxis.Rd
75f4ad819f5747260e0e3239a535057d *man/kpBars.Rd
b8691b541eaed22115d790c822d99c2a *man/kpDataBackground.Rd
04e35fc84c9efe5d0830c5839f5dab76 *man/kpHeatmap.Rd
bd3ea5caf137ea1e1b437ee6c5a7360d *man/kpLines.Rd
ca3fa948667495c3b836024b57bedfad *man/kpPlotBAMCoverage.Rd
1161050a7f0ab72cd0d1da71229f9627 *man/kpPlotBAMDensity.Rd
e8765ae8f17b1e80dba8b71c1b3a3fda *man/kpPlotBigWig.Rd
c464dd88c19554459e2b6701b1428041 *man/kpPlotCoverage.Rd
9213392720bd70c7079f1e0e5f8efaa9 *man/kpPlotDensity.Rd
42a4bcb28cc7024c0b4eb32c1e41db52 *man/kpPlotGenes.Rd
eccf767429596211a2bbeef336d0997f *man/kpPlotHorizon.Rd
feb4c99c823dbbcc5a80af1c8309350e *man/kpPlotLinks.Rd
22027bd963612d8e266351412e75b24d *man/kpPlotLoess.Rd
f1a54a26d91e556acb09741d140461cc *man/kpPlotManhattan.Rd
6a29d51b4f06236a42cb5c66639879d3 *man/kpPlotMarkers.Rd
f92016ac4bc52a3a2f04ae5efcf5d977 *man/kpPlotNames.Rd
e32f2938acaaf995ea1467c2a1b479a8 *man/kpPlotRainfall.Rd
9a789238c6ec9354a1db84cc390fedd0 *man/kpPlotRegions.Rd
247d4368efcfb1e7a823806eafd6fb46 *man/kpPlotRibbon.Rd
a9503370d1fce0e0a393cf527a49e2b9 *man/kpPlotTranscripts.Rd
0caf1025f64c29c443ce4b0b35f3acb1 *man/kpPoints.Rd
4d8e7b8d0f502ea34452a50e66421d15 *man/kpPolygon.Rd
d84e2f03f2b94ace59b2093b66abe60a *man/kpRect.Rd
f8d03dfc6f914c6600a70e6f70229645 *man/kpSegments.Rd
85259e990316f39841a0c8390d9a3e47 *man/kpText.Rd
d8331b9aee802872020ef0e91fb72c9f *man/lighter.Rd
8bfaf64b7bc81d8c174ebfa322387634 *man/makeGenesDataFromTxDb.Rd
9710c8c2792b212c91445b8bce272f05 *man/mergeTranscripts.Rd
f60135440e19c066aa593f9018bf59f0 *man/plotDefaultPlotParams.Rd
ce5c1913713ea9792cb0aa98b9977fab *man/plotKaryotype.Rd
98854d0287f220f37681dca9fdf460df *man/plotPalettes.Rd
ac061671e0cdbab96944f1ea717565ae *man/prepareParameters2.Rd
6cec811592d24c60209331e62e90cb3b *man/prepareParameters4.Rd
07e8f1ca839c7e41d046a3df4490ca39 *man/processClipping.Rd
1fb14f74f9de2b3c60dc4e0dabc2ff3c *man/transparent.Rd
f1096c9a36d3fb1a05f1eca2c83895e0 *tests/testthat.R
e57394eb6e8a5379543ee4f2bf1f7c07 *tests/testthat/test_Cytobands.R
ba83959e853f6599d9bf6aa454e1c8ea *tests/testthat/test_colors.R
c956f12a18f44b9b6e43c2d760ca8e64 *tests/testthat/test_dataInDataCache.R
0154924cd24b3b14f1d6053b331a96df *tests/testthat/test_plotKaryotype.R
e4c548d9b1915c93711f4dc1f33e1422 *tests/testthat/test_prepareParameters.R
d6d810bf5ec4875accf8c2160dd3f8f4 *tests/testthat/test_utils.R
14c902f9b690bf6e81d6684deb485b74 *vignettes/karyoploteR.Rmd
