0fd3908c080c609496668163cc045667 *DESCRIPTION
5fed0ddc9260e7963b7049f2412530b4 *LICENSE
8c1d0be213168ce8960782699d8a63e0 *NAMESPACE
23ca1a0174911030cbbe5e443c18ba2f *R/SplatterScrape.R
3f4e164e6ab7dfbe08ee6af30087e80c *R/data.R
827a81fdbf4c503188c8d0c45760b660 *R/inferCNV.R
df1ff67ef951a8ffb6131a10ce7bb296 *R/inferCNV_BayesNet.R
eefe8d68054285c14957c378fb00dfe4 *R/inferCNV_HMM.R
8fc987ed3152041b8067b61094ebbeca *R/inferCNV_constants.R
5583bdda9ce07695a219448935428233 *R/inferCNV_heatmap.R
fd28829d8845dd363caacf2c107181cc *R/inferCNV_hidden_spike.R
26f30886a780c9e4446b24a14f7187ca *R/inferCNV_i3HMM.R
dc7b94a8bfb395afb14fd212134aa5af *R/inferCNV_mask_non_DE.R
80a2d3542f8e93f4fe104e434868e864 *R/inferCNV_meanVarSim.R
5df3e5c1b570e1f69684483f089435cb *R/inferCNV_ops.R
5b9017df6a9198d8c07b02897fc55732 *R/inferCNV_simple_sim.R
4ca76ba7ff1bfd6e6b09976bc76f9223 *R/inferCNV_tumor_subclusters.R
db2c9524f2e52fdbbd637a6de5f8f9b7 *R/inferCNV_tumor_subclusters.random_smoothed_trees.R
8822aea19d7ab4fb2e32d8aaaa7481bd *R/infercnv_sampling.R
c2c60191bc47fba101c00bb2b3bba143 *R/noise_reduction.R
a61275d9ece28a298c03d6dbdb30f0c4 *R/seurat_interaction.R
b4c1ab246a7fde8fe8bb485770bc5d6c *README.md
a9c3fef42f79fdd9f7d0904ccb5d63be *build/vignette.rds
028109ae842870b0b3f1f99578cf47a8 *data/HMM_states.rda
374fc677bfbbf3917e3e0ab0d1e5fa51 *data/infercnv_annots_example.rda
74c3f12974dd056d3e0c3e311cfc1c85 *data/infercnv_data_example.rda
889c19232f4f832eaf5b4464a2c88548 *data/infercnv_genes_example.rda
5e204496a733bf65e0dbc1313f50a855 *data/infercnv_object_example.rda
b2ab71270a230f67cd5a8481cf36fdbb *data/mcmc_obj.rda
383c5f38cdcd04b2016a12ac76a2b9a5 *inst/BUGS_Mixture_Model
689f7bb63d76f7707d42f52f364dfe6c *inst/BUGS_Mixture_Model_i3
c43f37de057e26cb765656500d931a72 *inst/CITATION
d1e26dd09054c3d3c13a35f2431747f8 *inst/NEWS
fc297245430923f43caa976dc6a9f1f1 *inst/doc/inferCNV.R
cf703a534c7a33de721693d4c99d9010 *inst/doc/inferCNV.Rmd
a61d2d4118e841f67478a288c408b467 *inst/doc/inferCNV.html
f4b57ec6b2be179b4283f1e01a35ca3e *inst/extdata/gencode_downsampled.EXAMPLE_ONLY_DONT_REUSE.txt
a8c09ec7566fa6e3f3fbaad48c2afc71 *inst/extdata/oligodendroglioma_annotations_downsampled.txt
4bdd37b7608031195b7cbfd5605a6077 *inst/extdata/oligodendroglioma_expression_downsampled.counts.matrix.gz
4b54b209029032e7e933ce29da1e8e35 *inst/script/README.txt
2fd0360291543ca875eb010251bea554 *man/CreateInfercnvObject.Rd
0621c68b690167653681e0a71c5ee7d9 *man/HMM_states.Rd
3d58ca20e2134e1126362ebae6dec4d7 *man/MCMC_inferCNV-class.Rd
e2d3bf7bd84f40006109fa553be8b919 *man/add_to_seurat.Rd
9773b3738ef6c41a06f55a237ba5c954 *man/apply_median_filtering.Rd
907cf651b237d561217d8c0f2d9a95cf *man/color.palette.Rd
8bb88f35d033c6ffa524f558975a1cac *man/filterHighPNormals.Rd
d73233d34f4da8a8ed1b15060104a49c *man/inferCNVBayesNet.Rd
1b7263aaf50716b25e2ed320a618e34c *man/infercnv-class.Rd
8c4f2d00c8ced22b247fc31b8075aae5 *man/infercnv-package.Rd
b9001cb026ae79558407f3fc52fa45ae *man/infercnv_annots_example.Rd
a7ce81245bda731361154aeb561766ad *man/infercnv_data_example.Rd
2eed2e6459e206a107c04749c461bc67 *man/infercnv_genes_example.Rd
ae823e4588d71310e9567ae05ef7dc1b *man/infercnv_object_example.Rd
80be746e827aba7542097892663afa75 *man/mcmc_obj.Rd
f1afc5b81b5a9c7f311cfc6f0a27349a *man/plot_cnv.Rd
9124c911084e59f5895f90f10ad48fbd *man/plot_per_group.Rd
3a296d1e68b435b26d78868e703386e9 *man/plot_subclusters.Rd
8cbbbd77f8d9214c9b7203f242ea1c65 *man/run.Rd
49d961223042ea29a978b9dc9466f0dc *man/sample_object.Rd
f2b4ec2c1090b8b345646748a1199b71 *man/validate_infercnv_obj.Rd
47accf716a9e4e966efa26fbb5877cf9 *tests/testthat.R
6d47c8a4ab54e71363e94bf39acb304b *tests/testthat/test_infer_cnv.R
cf703a534c7a33de721693d4c99d9010 *vignettes/inferCNV.Rmd
