25163e69493f233761ade8c0ea7dd276 *DESCRIPTION
d213bbcd3698cbd59a3188d6614b719b *NAMESPACE
37c836f0b979d12e92fea28b57ae66b1 *NEWS
bc526c72f16ca913b012abfb4ca323c5 *R/AllClasses.R
2b31d27c414861814c56bcae84403673 *R/AllGenerics.R
475963a5c6eeecc8581ca087be7dd235 *R/hapFabia.R
d8119d6dca8daec50bf878dcf8b6875a *R/methods-Factorization-class.R
46c651367e951f27f9d71d6bbb5decc5 *R/methods-IBDsegment-class.R
a98dd45f1c69a1df2c0bf4b9d832ec90 *R/methods-IBDsegmentList-class.R
129265a006964d7eaa695df0428ee9cc *R/zzz.R
bf13d7bd60e7e28dc845d3a7b3e7cad9 *build/vignette.rds
32c7d7bca375816f7860191c2775aed6 *cleanup
e3cbb8f466943d9cf07da11b38ea112d *data/chr1ASW1000G.RData
bc4d6116fbfab36c10649bb6bafb40b8 *data/hapRes.RData
8e2fe677875889c259fda1cfda475a8c *data/mergedIBDsegmentList.RData
adb9bcdf0493962bac7b65770cf9b937 *data/res.RData
8a0e3af313883961cf8329af8c58a4ca *data/simu.RData
3a38c64e153ab92c05ce46ee53841e6b *inst/CITATION
6309dc8a41040e96e0e96e3de6742c77 *inst/doc/hapfabia.R
748db0e9415fefae436b43769a464d61 *inst/doc/hapfabia.Rnw
716c1223b99840e7b19edea93fad8bf7 *inst/doc/hapfabia.pdf
9dff2900ccbe09513488f33ce673599d *inst/pipeline/pipeline.R
54fd725c64480ef6fa18dec2793e323d *man/IBDsegment-class.Rd
a3784b76cd3d646fa959bce0d6c2e703 *man/IBDsegmentList-class.Rd
96d9834cd51f4ec93d48022999eb2a7a *man/IBDsegmentList2excel.Rd
1f9d3a2178d31f83bd6eb00d2734012a *man/analyzeIBDsegments.Rd
6f32cf2bb3d792a294405420d557ff4a *man/chr1ASW1000G.Rd
a88c536537cba48bb9dea70fc6e9b030 *man/compareIBDsegmentLists.Rd
b9ec8503f664e9416fe4eba380b70db8 *man/extractIBDsegments.Rd
1047e5147f798a561a0cd66f021b44e6 *man/findDenseRegions.Rd
20f81a0d0aae9296697750a328d1da72 *man/hapFabia.Rd
f339923609ee79e69b7d5dd12165cbd6 *man/hapFabiaVersion.Rd
fb924cd022954db0c44c8141062d75c4 *man/hapRes.Rd
bc63f9bc525f84f5b339ea640de12120 *man/identifyDuplicates.Rd
14900c5c994f034a2f296786e365bc07 *man/iterateIntervals.Rd
8777551aaa68a1e0fee7c9b3ddb15334 *man/makePipelineFile.Rd
f638599fceb0d5266ba812ae7e8862c0 *man/matrixPlot.Rd
de0ccea047d0510348b3f93b6c789b30 *man/mergeIBDsegmentLists.Rd
f1414a888b59901979b0f27f19d506dc *man/mergedIBDsegmentList.Rd
2c3701e4131f6e5ed2b4bc0a55d62155 *man/plotIBDsegment.Rd
c27792f2b39d7e707c1bbbae1c73725c *man/res.Rd
340b32ff4ccf4b1484ae1080b86fa10e *man/setAnnotation.Rd
af103817421dbef4a910092311b701fe *man/setStatistics.Rd
9eb63c6c3d6bc98a9280d59d852da4cb *man/sim.Rd
3b3945225e0b75afb9dcdcb12e348560 *man/simu.Rd
26fe9c142dec37438b4533782005fdbb *man/simulateIBDsegments.Rd
cb912636fd6a5d425a439073f1580d02 *man/simulateIBDsegmentsFabia.Rd
2bc0f2187a5281907a9d1297d2792c12 *man/split_sparse_matrix.Rd
8218d71093c9912d872f24dd734e46fa *man/toolsFactorizationClass.Rd
4f27089fffa8da9a698ec0d324c50ee2 *man/vcftoFABIA.Rd
6c6a96898c53f0abae910b4bc7ce1045 *src/Makevars
3eed60b7132255180be789de5121973d *src/Makevars.win
7cf8982595c4a288651ffecc6fab0f38 *src/commandLine/split_sparse_matrix.c
9f07b1e63cb269d1755582da412ff65c *src/commandLine/vcftoFABIA.c
bf67ab9c691ea09d780d32fafc396928 *src/interfaceR.c
5b0f691dac05f70ed42096f6682688eb *src/split_sparse_matrixB.c
59c5da11c93f01684dc715f10a6e34b2 *src/vcftoFABIAB.c
efb91b4e67149d593b9217dfb152a13a *vignettes/bioinf-article.txi
796c822a42721e608226ad8b86954533 *vignettes/bioinf-bar.png
0d952d75222957d46e64ea8bb51d77c3 *vignettes/bioinf.cls
44c66e6ddf481a8cf1d76fdc7b3467ff *vignettes/figures/example1.pdf
51f39c6a9027e75fb6a5b84377307490 *vignettes/figures/example8.pdf
28785a4ef8dbf245ee737bc6d4dd9dfc *vignettes/figures/pedi.pdf
78490a80c35c3a30cb7f27c1d3b99cb1 *vignettes/figures/plotB1.pdf
b307f4465ce0f808cd684cec3dfa1d28 *vignettes/figures/vectors_new.pdf
748db0e9415fefae436b43769a464d61 *vignettes/hapfabia.Rnw
e8668eb03aadd108ab4e1740cb13df22 *vignettes/ibd.bib
422b02faf00a676c819b13b81ec67e99 *vignettes/natbib.bst
adbbf2c54998cc55da9dcaeb7647ec94 *vignettes/natbib.sty
