391e827def2a65df05e523eb464bd31f *DESCRIPTION
87372d06200439838cc15090ab1db1bf *NAMESPACE
88037379b7e2a50e4a35a9483fa6b2e8 *R/BioCpack2EntrezIDS.R
3e9321cd2170e2a50977d13485ca9d25 *R/BioCpack2Profiles.R
935286940bd95c6c448c40894dfece2b *R/BioCprobes2Entrez.R
10315f4415ad49c111d5373168b9a471 *R/GOTermsFrame2GOTermsList.R
1af92ade72b0d2900ff3b98132e69607 *R/GOTermsList.R
10cb002592630d2cf6c253f8058ffc75 *R/as.ExpandedGOProfile.ExpandedGOProfile.R
7a6ab5a07b32ab2c1e9119efa1140042 *R/as.ExpandedGOProfile.R
e73329335813b9ab42ebb70292d1f4d9 *R/as.ExpandedGOProfile.default.R
21f07a0161cecc5b8a8df4e38f9373a0 *R/as.GOTerms.frame.R
f6ea7f9c1218efc2336e76b9dab78523 *R/as.GOTerms.list.R
719c644fd272d2214e021696a8dd1597 *R/basicProfile.R
055e4e709fcddc21cedea59bfff69fcc *R/belongs.to.R
0790b21b788fc165d5bdbdb487384e3f *R/chiDisjoint.R
f1d0306a71754f841c93631ef2065eb7 *R/chiIntersect.R
b3b6b80ca60d2dbab74094d6862fd586 *R/chiPnP0Correct.R
44c9945e90d28ad0e0915a520b5b08cc *R/chiRestrict.R
45182557dc149e0ef5336d4d7b7d25fc *R/clustKidneyMF2.R
e795c38079aca703d9b224e89978e31c *R/compSummary.R
014a9aa9f91f5b21e11092e82bf78870 *R/compareGOProfiles.R
b2deb45e8e29672dfe389302661a2e2e *R/compareGeneLists.R
0114487dac2c802b200afc1d881a6942 *R/compareProfilesLists.R
1fd44206f6cc57bb66e12bbc83f6f8db *R/completeMat.R
d761cd008e20e9da4774998d07303a02 *R/completeNames.R
f5d3ce454862d7d857b902ae5ec74b89 *R/contrMatrix.R
88d183cfa6d356146ab9b05d14f57700 *R/contractCol.R
ad256a86a600d48c35ba12efd796faac *R/contractedProfile.R
8c6e2f9e20a51783016319b3ff2431f2 *R/contrast.r
dcc44e9784952d112322d2be4069e99d *R/covGO.ExpandedGOProfile.R
89928987921a0d03dbceee22d24f8bc0 *R/covGO.R
736b9178e76351692d13cfa67e749b86 *R/covGO.default.R
aec57760e4ae912203d5601252f91e87 *R/coverage.r
6fdfc0776e10a0cb72275f2ebf17892f *R/dEuclid2.R
19dd16c0058b5b60c24fd54e6cfc5821 *R/dgetGO.R
0f5204a223355dd6ea28f0f6937c3705 *R/dimsGO.R
590b7c4d6f2259066f5f612c7be69050 *R/equivClust2pdf.R
e8311b3f82c4ec6af1be551d186046ac *R/equivSummary.r
8545774d14cedbbc01c1b569c3eb3126 *R/equivalentGOProfiles.R
955fc105381e27932a1df8f8f85bef21 *R/estimProbPrecision.R
e751eab2a12609de0a2bd9d076fa0ac8 *R/expandCol.R
0c5d02b6cd3c2900d6887299b1838a33 *R/expandNames.R
e5867ccad68f69a91e6ab531eae9a719 *R/expandRndGO.R
9fa59d0c074ef1a859f7e731d21ff765 *R/expandTerm.R
1659a6246befdb8bc6db57ff14092f88 *R/expandedLevel.R
2332e8928fb00c72b2061bd3222edf3f *R/expandedProfile.R
40984905d092d677f08e41afd0d48190 *R/fisherGOProfiles.R
19cf5d7f56646cba2f21b64a10d5a617 *R/fitGOProfile.R
e678a08e4ee2e6fc52d0648eb7dd6a49 *R/frelGO.R
cf53a4f86b28d2eae8f6dfe3021b204b *R/fullGOProfile.R
86bdd529e6713b366ac4b5a3c806c98c *R/fullSetOfNames.R
ac72b82a904fdebc0a032b754d9ca02f *R/generate.multinomial.R
b4cfe1af3b62a38668514e70df173d14 *R/geometricProfile.R
c08a011635732f44ebbb1ac8dbf32036 *R/getAncestorsLst.R
e620bdb4f829cf10de7dafeafeb49864 *R/getGOLevel.R
acebdcfcd8334c70bc9639ba97bc4253 *R/has.element.R
8a7033aefe3f547403d07308042bae54 *R/has.ngenes.attr.R
ccccf2cbe915707ed94ba3fb7ebd99a2 *R/has.numGenes.attr.R
08502c35144f3a599c387e7c782e1e41 *R/haveEntrezID.R
3793d5557b3d73ed747e9c3d175c71ac *R/haveGO.R
47a98be331b95bcac341a7a50156401c *R/idEuclid2.R
c9ca5b60d8196f8e93dc254e340915bf *R/idEuclid2P0.R
720e3e2e0a72fb9f47b4bc5cc62da5da *R/internal.compareGOProf.R
20713f49c227ac90d5ff29d17cb5c8ab *R/internal.covGO.R
79f0625c1f967d49e6c5c7659329ad0f *R/internal.enrich.R
cb6abb9642193cc7dfae91ba75d6ec8d *R/internal.enrichProfile.R
0099ad88fb52bcfb48d35a0113f1d703 *R/internal.equivalentGOProf.R
f69335feb3382239e410b4dd73f4a8eb *R/internal.fitGOProf.R
ac49e1d67b1b69bc4757dd7868df7091 *R/internal.varDifStatPP0.R
cb530ecca0c4b92e04f440c84a9286d7 *R/internal.varDifStatPnQm.R
79b8b75e7c6dd38ef766cc7cb2d05e50 *R/ipvalueP1Q1PQLinCombChisq.R
ef866d5b16a93716dc6bba2fb6d6fc7e *R/ipvaluePQLinCombChisq.R
b496a3fd79cc8f5d82e7e0a6751611fa *R/ipvaluePnP0LinCombChisq.R
f309c6a279ac751c38f50f41980654f2 *R/ipvaluePnPmLinCombChisq.R
cb4fd24de46d40ca6a587a84da5d4bde *R/kidneyGeneLists.R
6a19a73db28aa0d82dbbcb5a8f16f004 *R/lcombChisqParsOK.R
d4e2aabdc3cae224855b217dd2eee02d *R/lenGO.R
e903f738c86a80db551a4c9c5af97a51 *R/meanICLength.R
0e54e94e3e21cfcb580d9f8a01aa79bb *R/mergeProfiles.R
37fb638e10e0bccfac1b8e51b7c81a06 *R/mergeProfilesLists.R
8b5a10ebbbb9bc73bcd468f5c03a110a *R/multinomial.R
d2532fb6a689957cb7cbe05126e3543a *R/ngenes.BasicGOProfile.R
47e0f9079cb32cf624a4194627306d8b *R/ngenes.ExpandedGOProfile.R
faedcdaa6f6258f345d377f337d29afa *R/ngenes.default.R
970bc5c04ce19184e2c3a996c9dd4f48 *R/ngenes.i.R
57d76664a37e17be62798481c631b945 *R/ngenes.matrix.R
bcecb38f779a6b4415015c6e3dbf8a00 *R/ngenes.numeric.R
2489d03d28ab3c30ef80937006258b3e *R/ngenes.r
5880c98b6127eab2f107d4d8a5722297 *R/niceProfile.R
79c63d0cdaf051f023a1202ba8ce9c38 *R/normIntLength.R
5162423da347ba74f4639813ea889d14 *R/plcombChisq.R
a02567ed16167ac29d9087b3c4ab5888 *R/plotProfiles.R
e61336aafdf56300b4055b887ce9de7d *R/printProfiles.R
152184722ff8d6d1b9d2b76bc41ec247 *R/profileEquiv_topDown2.R
c21300885333a31ee39336af5fbac2ce *R/pvalueExcludingLinCombChisq.R
468df1e51d1500aa4059753dae2a627b *R/pvalueIntersectLinCombChisq.R
8171b7704e45df92884d537529cb156b *R/pvaluePnP0LinCombChisq.R
7e172208f596edaf8cd2ef3ce4a91bc9 *R/pvalueRestrictLinCombChisq.R
5ea274278e2a7873b385e74d1ca20235 *R/qlcombChisq.R
89d1393f41c38d1250dbd77dd82db7de *R/rawProfile.R
849cd07ca48ed8aece53c76f48cc5d82 *R/reset.generation.multinomial.R
8c93be47f44b52278c5699ca4d715cb9 *R/rlcombChisq.R
1caa1d2829316bd5d91b1d40257eab19 *R/rndExpandedGOProfile.R
3664d6eb697ea76e3d5b9f981ed02463 *R/rndGO.R
72fae9739e68d9042278e7277151dbed *R/seDifStatPP0.R
1c348781f0448c8f5f799d9a63dae4e6 *R/seDifStatPnQm.R
5e988bc711637baf7228ebc32e39162b *R/secondOrderMarginals.R
008f4184103a8b47cef2a40c32fa206b *R/setN.multinomial.R
a89e5969d5be90f640e79852f0687997 *R/shortName.R
75f9e724a165eb6d00f4ae73bb3b9046 *R/sigma.excluding.R
0a022d917be7ff26407643eb537c23d6 *R/sigma.intersect.R
f7d0eb5305b6e584b70a3b1389f526bb *R/sigma.restrict.R
1c021a717de66231effb928fa2cb7493 *R/sum.and.R
42b60be5ee79b0509a93a0cebff212ab *R/sum.if.R
c42f153e54bdb33da807ecd85dcb6603 *R/table2xs.R
b6b9ba2559db6fe7bfbcd331406d436d *R/toNumVec.R
e518e3cd36841cfb07f5fa984049d780 *R/varDifStatPP0.ExpandedGOProfile.R
e6077b00aba1d06cb6bc7d3cad1fc4c8 *R/varDifStatPP0.R
10a1f0ec63d34249cfcc1971d6eeb754 *R/varDifStatPP0.default.R
9d8356a14952616e24dbef5a32955df5 *R/varDifStatPnQm.R
8f232bd78cc3956e24af18b7820efe12 *R/vecProfile.R
5c83df2ead2ae7f2cd1f47ba116ee514 *README.md
84fac59bbddabb78837748d1d6fed397 *build/vignette.rds
b1934b0750eeb6964898022e62016936 *data/CD4Ids.rda
4ade6fcf4fb7a7346555b408762a6b4e *data/clustKidneyMF2.rda
2a341567be87d88dc13a2b80f5a9a29f *data/drosophila.rda
2ae6c55565d81277c6be5494743e07f0 *data/hugoIds.rda
31102df2acaaff90e488c07d9524f666 *data/kidneyGeneLists.rda
580cf312453bd49d37f6c4728c5e3bbc *data/omimIds.rda
620d4fe216d8530aa8bd0661a0c35859 *data/prostateIds.rda
4cb0e5647bdd3b70018ecccfbc2c365d *inst/doc/goProfiles-comparevisual.pdf
94f3ab4a32d8519182201ae7ad7eb0cb *inst/doc/goProfiles-plotProfileMF.pdf
9b2a8b1c19ab072106ce523e6d200edf *inst/doc/goProfiles.R
1160216ee5df5840294c9c25c57fcc63 *inst/doc/goProfiles.Rnw
7b4d5c42fbbae77122978c46606bea93 *inst/doc/goProfiles.pdf
4ec3a9b25a301e1dbca52e7b9a250b92 *man/CD4ids.Rd
f2832eaa032b86398a0977e21a98aaf8 *man/GOTermsList.Rd
d321691067be70311bae6e3904e726bc *man/basicProfile.Rd
e63981df53709d45fe7b161ee1177265 *man/clustKidneyMF2.Rd
87afe9b17f95ec47a7184e2e67984751 *man/compSummary.Rd
766e04c0fd6577bdaa0d82d2a5d4a1ad *man/compareGOProfiles.Rd
5fb3508ab3a34f718ea42b3c376226eb *man/compareGeneLists.Rd
8be2ebfee554c07c54a7a867a8c598b0 *man/compareProfilesLists.Rd
69cea0fc3b3f1a2e9e15f6df41a98544 *man/contractedProfile.rd
07987df496f47a3aa0a24d98480b40a7 *man/conversionFunctions.Rd
6ce4225e3b15fe61f8db75d4988ea676 *man/drosophila.Rd
1ea1ce982f8a699baa30a5a57aab6640 *man/equivClust.Rd
346322fd9090b307cb34625eb6999805 *man/equivClust2pdf.Rd
22f30e5244649187f0c911e68e3dca20 *man/equivSummary.Rd
26f053633b1330dfb8c8b7078a0057a9 *man/equivalentGOProfiles.Rd
1d82cf12010c914402970b27d71f36ec *man/expandedLevel.Rd
1e630f14f8108bcdccd9f65fbad9b695 *man/expandedProfile.Rd
4536de30a06c7a5fba192efc78046915 *man/fisherGOProfiles.Rd
ab97297c8f5561414db268cff502e102 *man/fitGOProfile.Rd
825b63fb142100b99a59523b6e5d5f78 *man/goProfiles-package.Rd
5034ae56a3cfaddb2b273b3d95e7c28c *man/hugoIds.Rd
76a220beacb63f9b568ee66f39c594b5 *man/iterEquivClust.Rd
00cd8f1baca2aa80d2221dd2543abdfa *man/kidneyGeneLists.Rd
d0b6c74710414758f7c77784098480f5 *man/mergeProfilesLists.Rd
8df5596954682b2c2ea9dbae288454d4 *man/ngenes.rd
fd529f24fd00f9f7875b934e93784e07 *man/omimIds.Rd
6aa0704d59d4bba8116376e216a293d8 *man/plotProfiles.Rd
4ad95ffb61f206643b7da5f43001a720 *man/printProfiles.Rd
1563612028618ace72d50eba31708646 *man/prostateIds.Rd
ddfa957f03b4ef88217a0f640facf992 *vignettes/fancyhdr.sty
1160216ee5df5840294c9c25c57fcc63 *vignettes/goProfiles.Rnw
