ddbc2309808dc3b0ca085149a0c9624b *DESCRIPTION
1d413886e8e915fc6c0d609c324acb0e *LICENSE
5d355cbb3b41f580fa73bba130a3bce3 *NAMESPACE
7fd8f14966b78fee7daa6c972068d142 *NEWS
23679d1d0f32e8a9013e0312e0253525 *R/alignCoor.R
4d047b9bb55a7fd3a7605fe502fea5ff *R/cellClusters.R
1d401c25cb44001a051638945173e7fe *R/create3dGenomicSignals.R
825f1ec39cd24d3c0a657b956b54870f *R/createTADGeometries.R
0e5b013646e0187ac71a7f884ca6740b *R/extractBAckbonePositions.R
bbd92d710ed8cb49e6af0f987110732f *R/geomeTriD.R
05151cb6e9bbc130787907c0f9c5d0cc *R/kabsch.R
25d611aa5862746a9dd222b1201271ea *R/loopBouquetHelper.R
6da18997560693f548544633d2b4a3d5 *R/loopBouquetPlot.R
5a472724834056da3cc521c5515fb77b *R/mdsPlot.R
8f5dbed67fa3266c22731cf8c20d5d5a *R/mdsPlotHelper.R
890515f7924c3f47200e48da4a00ccc4 *R/pointCluster.R
f235f575099a9174fd40415eb89e1e74 *R/privateUtil.R
ae75e5eb564cd7f64ea67a16527064eb *R/rglViewer.R
169370030e159c5f282739c1f2814258 *R/smooth3dPoints.R
663ca1c0f8c572066ff2fb3f6118c924 *R/spatialDistanceMatrix.R
e51f2ac285e9d54fdf493e8fd1c53526 *R/threeJsGeometry.R
15e99760c36b6f95513972d7565b5063 *R/threeJsViewer.R
74b70fae9ca12cd9c710572af637e0ab *R/view3dCells.R
e05cc2e4bbd7dec495c617041d34a5ac *R/view3dStructure.R
18897603f79492af67526512a6778b1d *README.md
116e5e276c8615878562143eadceaf2a *build/vignette.rds
fb69c277125ed5d963e5608be5bf95e9 *inst/doc/geomeTriD.R
c3eb757ffdaff6f0425e2dc9ab65a6a5 *inst/doc/geomeTriD.Rmd
54ddd9dd630bb9705a8e2004a141d084 *inst/doc/geomeTriD.html
60bf9249d6c13f4a74939662e3345109 *inst/extdata/4DNFI1UEG1HD.chr21.FLAMINGO.res.rds
0cc170086be0f435aa1feb5030077950 *inst/extdata/4DNFI1UEG1HD.feature.gr.rds
9073bac43af8d9af9ae97c847acb4806 *inst/extdata/filelist.md
7aa96a40df9ade3df7096f4d11c54813 *inst/extdata/nij.chr6.51120000.53200000.gi.rds
1460d99e29d233970e8274975a752c25 *inst/extdata/pbmc_small.3d.rds
e48408c61357af322550403956b012c3 *inst/extdata/script/4DNFI1UEG1HD.R
034d17b9aea60b8b2398b951341804c9 *inst/extdata/script/pbmc_small.R
cc368f5ceeb955f6337ee9bc0e2fa3f5 *inst/extdata/suzanne_buffergeometry.json
6c659b2dc6abc7a383cbbb900a0c60d2 *inst/htmlwidgets/lib/tjviewer/tjviewer.map.js
0473ae0152bf0d1800d9f7ebb3fb33d1 *inst/htmlwidgets/lib/tjviewer/tjviewer.module.css
7e135a63c876c20be77e7af3cb73d099 *inst/htmlwidgets/lib/tjviewer/tjviewer.module.js
307db8cfb8b83c1edbe6bddad8b47da9 *inst/htmlwidgets/threeJsViewer.js
41a29f6996856ffa9bf5df4af81eaec8 *inst/htmlwidgets/threeJsViewer.yaml
4ca405a68db76a76b5d0d5022d36d4d0 *man/SDC.Rd
f19c0bcce504d7196f00c079746e6454 *man/SRD.Rd
7e4e5cca5840cb93576c71d507974eea *man/alignCoor.Rd
2fe795283e64ab992bfc401df859b182 *man/autoK.Rd
6f6045df178bf12016c4c803188370d4 *man/availableGeometries.Rd
f7fa66db61d17b095203b2f44a34c22a *man/cellClusters.Rd
5e554b54919fefce2fe53f241ab7f085 *man/create3dGenomicSignals.Rd
e0e5b7023d0a4522ceb69af64f643e5f *man/createTADGeometries.Rd
43bbc50ec9a891eb7f72a0e7c632519d *man/extractBackbonePositions.Rd
be7ffd5f8ef06aac38942b7ee6bd5f07 *man/fill_NA.Rd
1cc3fef0cca647c16cf6986755e0e712 *man/gaussianBlur.Rd
83ead2073955d7a6028155861dc93418 *man/geomeTriD-package.Rd
53d28fa1f684ff340b28df537aef9b36 *man/loopBouquetPlot.Rd
628e444197e83603b2d8035580b08d82 *man/mdsPlot.Rd
b316b2564a9d1c496be32e8a13697a0c *man/pointCluster.Rd
e04440d22234c6cb7e00a9532b6251a8 *man/rglViewer.Rd
ae8dde4a8ef817d5b97569e4ef61a1e8 *man/smooth3dPoints.Rd
b103aa3d5bb5f378f91e8a2a9133a7ea *man/spatialDistanceMatrix.Rd
fa1c266a7f4915cec8fe3298f3bbbe7c *man/threeJsGeometry-class.Rd
c3655d0cc434066be61cdabfb178e60f *man/threeJsViewer-shiny.Rd
8b0ce4790350d3af34507c3774d4dd23 *man/threeJsViewer.Rd
18819163793c1ac84495b46fc8950fb6 *man/view3dCells.Rd
53d612561a7c0f0fa78d231c9bfa8d26 *man/view3dStructure.Rd
2fc53dac3bd635be5ef1c386788ab509 *tests/runTests.R
7087d32f4628ff0fe078fbff7dd5f8cf *tests/testthat/test_alignCoor.R
b66631023e0d3db474b8e34d389a4592 *tests/testthat/test_cellClusters.R
d4baf4664890ce2b0e7dac4df030c9fd *tests/testthat/test_create3dGenomicSignals.R
5419bafb32df8e268de56e5482d49109 *tests/testthat/test_inputCheck.R
1d1e6f6daa157052fad0352476553701 *tests/testthat/test_others.R
7f163932732f85af4fb71d29d00f0d5f *tests/testthat/test_positionCalculation.R
ceefc39b1154876b790c9e61519f0e6d *tests/testthat/test_signalCalculation.R
47b02a42ece2f053410056febf679147 *tests/testthat/test_threeJsGeometry.R
eaa3260efc7c323a9d3a172d499f9209 *tests/testthat/test_viewer.R
c3eb757ffdaff6f0425e2dc9ab65a6a5 *vignettes/geomeTriD.Rmd
