2d5ef911cf489ff7aab3ecc2b3a7de06 *DESCRIPTION
bd2d16ed7604d9c1ebffc37501768641 *LICENSE
aa79854c9ef333c1ab930a31c589e7a5 *NAMESPACE
de1ec75909b1663d405480988a13a839 *NEWS.md
b14c25074275ae8bfe5bbdc3aaf84782 *R/GRset.R
54dd85376495161d86f04708d59bfc08 *R/add_ensemble_regulatory.R
749fc5e51f40e4895a02ae47081dcd83 *R/annotate_cpg.R
c075a02eb9ba1fecccd796208b81b3cd *R/annotate_epimutations.R
d2ef47e67e331860f41cc100aef29022 *R/betas_from_bump.R
47f98a927a1f958066eb38edf6dca890 *R/epi_beta.R
b7147eb0da279d1ee2a794357c4e6212 *R/epi_iForest.R
f8e84da700828bd04c4db0485ed3e01a *R/epi_mahdist.R
b144c8b19d8fb22099feb94cc359f44e *R/epi_manova.R
e17ceabe7ed409e9781b86a8f3a9ba32 *R/epi_mlm.R
21e3ebc61dc77a6141522df290799ca7 *R/epi_parameters.R
5fc74a5e63d850feb7b1ded8922797ac *R/epi_pca_correction.R
2f215cd6e64b1931a434cb0a620149a4 *R/epi_plot.R
3ed5b2e2540688ecc2b64790b8efbff4 *R/epi_preprocess.R
33563e74badc74fb05dfa9840c8faa59 *R/epi_quantile.R
2b127a4df30872d41afe2f06306cd0bd *R/epimutations.R
052ec8e22c5cf54f78bc8674438ede2c *R/epimutations_one_leave_out.R
c3e4d6f0b981c3cc7d572bb03b427ee1 *R/get_candRegsGR.R
fd49f312681f68aa1d8a5fc1599f6e64 *R/globals.R
3fd15c2b3ce11873cfa3914647af67be *R/mlm.R
5eae209b0a3b0fc26abb1f98673c7e5f *R/mlmtst.R
d6e2036c6c2faa7d0e05ceead26e7325 *R/norm_parameters.R
750bb73de97cfc20125e514f79e82503 *R/plot_epimutations.R
8009dcb2dfbd0c8de75eeb68c5566081 *R/pv.R
86b6e761585abff40d19cd39fd8e6b1a *R/res.epi.manova.R
f4acd82d20289e7882a25ea2f89f76af *README.md
e4a86ddeea0bd20c2e4bd16f3370e826 *build/vignette.rds
90fb33d8395c5a94c9f68742335e1255 *data/GRset.rda
934ca22c3f840a223e0f6559a78459e2 *data/res.epi.manova.rda
e09bec8ffd5b55e0e7d06e241f62a615 *inst/CITATION
f9b68146bf7d19467bfe333e11995eef *inst/doc/epimutacions.R
cdf38ced9f97eca16043657cca54a3c7 *inst/doc/epimutacions.Rmd
770b2e96f0bc9f24a59352eb65bcc411 *inst/doc/epimutacions.html
bd9b02793eb436c5b3f13930d73bb026 *inst/pkgdown/templates/_pkgdown.yml
48f42faf179a39c4b1ced101327dcc39 *inst/scripts/getEffectiveNumberTest.R
ea94d9d4a1cfeafd3a9d316fa328bf73 *logo.png
70e3c3c63ecbfa9b120ff7a5d6ceb4b9 *man/AS204.Rd
bcfaa428e15b78a516a9ea87e3774a4b *man/GRset.Rd
281ab2b1de9da59e927517257f0230dc *man/UCSC_annotation.Rd
7027854297294ef8234cb4d4de00931a *man/UCSC_regulation.Rd
c434963a926c575432349640db52406e *man/add_ensemble_regulatory.Rd
f207d7e379177182a88d81ffd14854d5 *man/annotate_cpg.Rd
6e95aeb7029cd36743ae1c96756f0558 *man/annotate_epimutations.Rd
77aed3f7212d6127347d4b8f92a39133 *man/betas_from_bump.Rd
43b141e71b812b0f78fc1e0aa7d3a288 *man/betas_sd_mean.Rd
faaa411d95b246794abb243e814cb648 *man/cols_names.Rd
16349adf12f6e4a8031cf0c2d1969844 *man/create_GRanges_class.Rd
8e08f65b1626d631123755650c2a9453 *man/epi_beta.Rd
ab031740ed38203596c5547d3adbc231 *man/epi_iForest.Rd
1e24431635d885e36869f37d435dc13e *man/epi_mahdist.Rd
d918d70ceca481449c3e1b27e4716fbb *man/epi_manova.Rd
8f15c670830a7a156be9e311ce727ce3 *man/epi_mlm.Rd
c8b565e571ef20eb8022c7a7102f8429 *man/epi_parameters.Rd
5f25046bc688260e5bf93e0602545aa8 *man/epi_preprocess.Rd
d7b00b661d47858932bc8252ac55866f *man/epi_quantile.Rd
08a6c594e66760cb9c09a0d160eb2a6f *man/epimutations.Rd
5abf1ea0d89d176c4732f416f9ee1b2b *man/epimutations_one_leave_out.Rd
4920f5c8a9bb72e183ad2fe5f698499d *man/getBetaParams.Rd
3ebd1285d7d9c912c1c037c5dbbc50db *man/get_ENSEMBL_data.Rd
fc2a4f2767382c18ace149d02f12a666 *man/get_candRegsGR.Rd
3d175958a21bca7185ccad2a76631313 *man/merge_records.Rd
518b2f972e3cb3e4aaef9f6bc827077a *man/mlm.Rd
ee4b104e9996842a132e183b14e03d50 *man/mlmtst.Rd
f5c97be49412910155e7de685ad1fccd *man/norm_parameters.Rd
8872f8ae5ec9333b997cbb4b7176fb18 *man/p.asympt.Rd
44583b744add419d535fa2ac984f2c3d *man/plot_epimutations.Rd
079c59f29e6ef0e0588b9972f7d9b80d *man/process_ENSEMBL_results.Rd
496d670294fb928854a1edf22249ff4c *man/res.epi.manova.Rd
987d8abef274b5061eb696e7c2e0602a *man/res_iForest.Rd
d42a34aeb2f99476a156aa3f1779ff1d *man/res_mahdist.Rd
76e7f0a542b954a75cd81d9c3950f34e *man/res_manova.Rd
953573a93ea297041c1ee6df661ee1ee *man/res_mlm.Rd
32638fbfb2a6702e5de7023fd074ead9 *src/mlm_init.c
9934bb538300e2427ff5512c38d62b46 *src/ruben.cpp
00c43f9b7714ee20b1860a781721b14e *tests/testthat.R
5280e5de3127e24190dd1e029282792d *tests/testthat/init_data.R
604636e9e5882da470fdf218634960b9 *tests/testthat/test-epimutations.R
cdf38ced9f97eca16043657cca54a3c7 *vignettes/epimutacions.Rmd
3bf4f55af941436167a3f979cee5947f *vignettes/fig/gvizGenesannot.png
210163c34301741ec646ad0b2b9295ab *vignettes/fig/gvizRegulation.png
66374c971d49ff7228466e645f9a4934 *vignettes/fig/implementation.png
6bc21c9fd8a123b0a4275d47f1971996 *vignettes/fig/workflow.png
71a4c2a7eb630a3583f7d20bb2fae866 *vignettes/refs.bib
