85921c5f5853e01de86d4e87caf603f7 *DESCRIPTION
fa938a120a38834c5bb82cdfb297685c *NAMESPACE
0813b03e994f2598aacc98579d9a3fb8 *NEWS
8ac83991f296bd4850c28a69b4696e63 *R/AllClasses.R
7ebdb47ad659070e60c0f44befa416d7 *R/AllGenerics.R
6c3cad872c64959110d90fc58a1bd807 *R/BiocFileCache.R
4a9d9dfc3da75b0744fc4427b5f52532 *R/GenomicRanges-methods.R
86080e7dedefa1690d4c572bd997faf0 *R/IRanges-methods.R
322a6ca89e15e7817e0e78e5c8b83a04 *R/Rsamtools-methods.R
cfeb6e0258badd50e9ef9b27c6b39421 *R/ShortRead-methods.R
63f6209644dd127e069592d66c605002 *R/basename-methods.R
5e255672068c6c1321418eeed6384e3e *R/easyRNASeq-AnnotParam-accessors.R
f3ae03f36e8bbdf9382f652ce94a9784 *R/easyRNASeq-AnnotParam.R
1aac08148f94e77cf8fca47ea40fe1d5 *R/easyRNASeq-BamFileList.R
e6fbb79390bde41b230d10f77749817a *R/easyRNASeq-BamParam-accessors.R
59ffa8e17c3c68555ea00775da5201ee *R/easyRNASeq-BamParam.R
e54225eb9eb00d1e452347473b23653f *R/easyRNASeq-RnaSeqParam-accessors.R
cfeed8da26c6bd0984f8309aab7ff983 *R/easyRNASeq-RnaSeqParam.R
0e5d2e28655d997545c951408981443e *R/easyRNASeq-accessors.R
44b68c659a86663c69c2302d81492672 *R/easyRNASeq-annotation.R
3190a5658a9fa6c8c602595167a8d012 *R/easyRNASeq-counts.R
445640de0573eddf32fcd70b3a8f8c6d *R/easyRNASeq-coverage-methods.R
df8a1fbc83c2afb8c7eec6cb1f516654 *R/easyRNASeq-internal-AnnotParam-methods.R
1d12943f78bc350750e3df86f38f3946 *R/easyRNASeq-internal-annotation.R
414159c76a4861237ae64f0e1c1521cf *R/easyRNASeq-internal-counts.R
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258747cd4e0dccdf68b1f6185c0ffb49 *R/easyRNASeq-internal-normalize.R
5a9cde502bc2b387de45a3e07737c70f *R/easyRNASeq-islands.R
86e767609dfe44247d30f9de9148afab *R/easyRNASeq-methods.R
2759957472d4ff450a8736dd29531ce8 *R/easyRNASeq-normalize.R
ba2f72c7ceb1666fbed3352039e5dbd9 *R/easyRNASeq-package.R
e4d93d2471bf15eb0561e3f73a552d7b *R/easyRNASeq-simpleRNASeq.R
9026d9688510716c37c8baacb2928eb4 *R/easyRNASeq-synthetic-transcripts.R
09f424767a6ef7d4ddba238e5f3e1787 *R/edgeR-methods.R
5685a40d49893debc231b40199534ed4 *R/file.exists-methods.R
75f2adccf2ffdf6dd3e629da7d231136 *R/genomeIntervals-methods.R
b518c1a1893f4fc6b2f23315759f9b32 *R/parallel-methods.R
9c4182fe532ce0a8f1516f956eff17b7 *R/print-methods.R
9dc228492bae15e2f21a56377d895cee *R/show-methods.R
5bb93e75b64c89cf84f24aaaed36b191 *build/vignette.rds
5d0200d7ecbedb5d9e9536babedca3f2 *data/RobinsonDelhomme2014.txt.gz
d4bf401c8ee4fbc0f84ea6ee9da7aaea *inst/CITATION
c4c89e7eb031240287f39bd66a259566 *inst/doc/01-Introduction.Rmd
2e7d68f8948c27d87c6307f5fe155c10 *inst/doc/02-AnnotParam.Rmd
318b6d3b2181a622c980bd45d1a0eddf *inst/doc/03-SyntheticTranscripts.Rmd
5cccebc516f7427a569a20776797b3f5 *inst/doc/04-BamParam.Rmd
33f077e8defd643fb9d0ebd5cfcd07d5 *inst/doc/05-RnaSeqParam.Rmd
6c61d35ace121d29a50b06b1da084c48 *inst/doc/06-simpleRNASeq.Rmd
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d41d8cd98f00b204e9800998ecf8427e *inst/doc/09-Acknowledgments.Rmd
958f1eafa6cbc2fb936ff923e6ee2e86 *inst/doc/10-Foonotes.Rmd
d41d8cd98f00b204e9800998ecf8427e *inst/doc/11-Images.Rmd
7d88cc2503a48f4ec8937c362e25440c *inst/doc/12-Appendix.Rmd
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7f01514be0a71458becb5aef321414c8 *inst/doc/Bibliography/References.bib
c4c89e7eb031240287f39bd66a259566 *inst/doc/Chapters/01-Introduction.Rmd
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6c61d35ace121d29a50b06b1da084c48 *inst/doc/Chapters/06-simpleRNASeq.Rmd
048307962a774976e00d7f4258a6850f *inst/doc/Chapters/07-cleanUp.Rmd
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7d88cc2503a48f4ec8937c362e25440c *inst/doc/Chapters/12-Appendix.Rmd
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7943d045d66628a664a5069e392eb65e *man/IRanges-methods.Rd
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7f01514be0a71458becb5aef321414c8 *vignettes/Bibliography/References.bib
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5cccebc516f7427a569a20776797b3f5 *vignettes/Chapters/04-BamParam.Rmd
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958f1eafa6cbc2fb936ff923e6ee2e86 *vignettes/Chapters/10-Foonotes.Rmd
d41d8cd98f00b204e9800998ecf8427e *vignettes/Chapters/11-Images.Rmd
7d88cc2503a48f4ec8937c362e25440c *vignettes/Chapters/12-Appendix.Rmd
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bb3b22e77d3cfa87588e100674fc961a *vignettes/Makefile
ac92dbf5b6026eb5836d3acadc6db3b8 *vignettes/easyRNASeq.Rnw
289ef9ef497ee9f4b3d6c5274acbb35e *vignettes/simpleRNASeq.Rmd
