a512d53998ee46adedb2e1d2da87059a *DESCRIPTION
d9d49fe40806f47d4a2d10e16b476b09 *LICENSE
82d5961fc6bfc81c43f5a48a1be2aab8 *LICENSE.md
b545c03f12b4ca694fd8aa6cc7b0f858 *NAMESPACE
43a0e63b484736a6f122959624afea95 *NEWS.md
e4b7ae77267eb40746f27141b9604d47 *R/assess_immune_response.R
a1be753807e8d05907492c5d45a834b2 *R/calc_z_score.R
9d795459431af67cdc4d1af387ce0c02 *R/categorize_TMB.R
e56b40deea856a16df6f7f31c10d6d9f *R/compute_Ayers_expIS.R
de2ead8d92f9a89bb2e6bd30130f5a72 *R/compute_CC_pairs.R
b785be104fa0289567ea474892e8c925 *R/compute_CCpair_score.R
7486316a5077c552fecfc0f25150b53c *R/compute_CYT.R
1f9e2a5b2f7e3ca4b228129ceb27052b *R/compute_Davoli_IS.R
fe17a5c4cd673d73561b1508097bcf4f *R/compute_IFNy.R
bc4c362a0f7b347d58c3d4555ba009bc *R/compute_IMPRES_MSI.R
5b30a1102a5ec0f293b1a37eaff49972 *R/compute_LR_pairs.R
2c35cff9f9ee02c0cdadc899cb47af63 *R/compute_RIR.R
37a3675914a0bf734d82bb50feffb8ed *R/compute_Roh_IS.R
d30efba7c1ee2351533f0520e07ce927 *R/compute_TF_activity.R
bf77fdace1999a9a2b2ee4a994e439ee *R/compute_TLS.R
92732972d62297c2e2e2fbd8ade96394 *R/compute_Tcell_inflamed.R
c18e1e95086aa2985b76c3ccd082d76f *R/compute_cell_fractions.R
090937bef0cb2f535b52feb83aaa3289 *R/compute_chemokines.R
50441f8b80ed8685a92c625d71744054 *R/compute_pathway_activity.R
23656410ee6cb505f2c7b1d173cb1734 *R/compute_scores_immune_response.R
9e5e519566f82cc87a4b50acdc757746 *R/discretize.R
36f96e75ab76b4de67af88a6f5f231b3 *R/easier-pkg.R
cb0cf0f498d16bc9338b6cfb4d105bb9 *R/explore_biomarkers.R
c1cfcb7adb83937d095d257c7bcf48ef *R/get_OE_bulk.R
c87055a54b069d1fd2e28dc198e9b213 *R/get_semi_random_OE.R
d456828862b3dfad00a19bd79dcf8948 *R/predict_immune_response.R
76928e4e09b91d6759f22098ec055c67 *R/predict_with_rmtlr.R
cd12b6be13984530958dbc7a02029538 *R/reannotate_genes.R
7c38c2d32e8fe894f015ca55f9c04e1d *R/retrieve_easier_score.R
8dfbec6e7142709b20e5c2cfe1d63747 *R/rmtlr_test.R
486119ed992458099229bcb43dd5f6dc *README.md
6a85dc7ed4c12ce5f8715ab7b5a46520 *build/vignette.rds
8468b190ae8103b35b67f079733ed29c *inst/CITATION
b170643d15e6221db5f597e4d98a7501 *inst/doc/easier_user_manual.R
1fd725e78413cae5a50135ec8969d7bb *inst/doc/easier_user_manual.Rmd
261cac0ff8d3da03d45a89515b9eb04b *inst/doc/easier_user_manual.html
24b91429a12def683db5c3a9428d0f62 *man/assess_immune_response.Rd
90d875264b59ae861e3ae9cc6f7ceee3 *man/calc_z_score.Rd
b33f1357bc278f66f369074189d72aac *man/categorize_TMB.Rd
7074beb71042ce0ed13e5e6a48e49f69 *man/compute_Ayers_expIS.Rd
2f18613042ba2a616e4ecebd8c1d7a1e *man/compute_CC_pairs.Rd
185d0e282d67e0c606a2539b4a7e420c *man/compute_CCpair_score.Rd
28a3387c1224323291352000fb84cb44 *man/compute_CYT.Rd
8cf56008e55c9dba66e6fd43fbaa2c3e *man/compute_Davoli_IS.Rd
eaa1f28c458b1a67e059d384d5d8ac51 *man/compute_IFNy.Rd
d9097a416a2e580f24342351217910ee *man/compute_IMPRES_MSI.Rd
7e15a0de2333ee6a050ddb3a3ea56771 *man/compute_LR_pairs.Rd
3dbfe0428e030f88328db22100a8164e *man/compute_RIR.Rd
228eddf23823666f40d88ab0783089f4 *man/compute_Roh_IS.Rd
e07ca6c94e2ea746f4290b2cca97c432 *man/compute_TF_activity.Rd
0959a715ef41832b516bbeb818348abe *man/compute_TLS.Rd
06d4e10d24c5d747e2ccda298449cecf *man/compute_Tcell_inflamed.Rd
2c0caa65e74927e3828c269a46cde2be *man/compute_cell_fractions.Rd
8297545bc24e8e9852c95c928a507846 *man/compute_chemokines.Rd
05ca98605dcf81f2fda9f395d146599f *man/compute_pathway_activity.Rd
d680972ba2ecbceb6073a13006aa386a *man/compute_scores_immune_response.Rd
0f4970941b0e8f2b3212e62c2e745dfe *man/discretize.Rd
f75d463e6a6bf56466087532de1cd655 *man/easier-pkg.Rd
1f247a1e455a4b04dc984a59f0855cc0 *man/explore_biomarkers.Rd
8f3b72721c9ffb4c68c482d7c867a5c4 *man/get_OE_bulk.Rd
1193f9724b152fadd10eb94fb59965f3 *man/get_semi_random_OE.Rd
0dcee8190ae0007e045b9dd4ffad458f *man/predict_immune_response.Rd
33f4149b3edb019ba177cdccd6fced89 *man/predict_with_rmtlr.Rd
0e8614e1026788eb58d8c58d69b95314 *man/reannotate_genes.Rd
1b6f7fcc03c81e996ef4936ac49ac757 *man/retrieve_easier_score.Rd
7319ceb884eceb02544fd6888962319a *man/rmtlr_test.Rd
ee8510ab0399a062db5f2f01668c6412 *tests/testthat.R
88a9233eaa5518afd1bda5bf6f5667f3 *tests/testthat/test-easier_run.R
07d53a9dcafc101495785bfe63308bdb *vignettes/easier_image.png
b6edfcfe26f8359986b7a5671de6f706 *vignettes/easier_logo.png
1fd725e78413cae5a50135ec8969d7bb *vignettes/easier_user_manual.Rmd
8b8472fc9cd874b1554526c38c67893e *vignettes/references_easier.bib
