79aa5ca3209a3eb63a4943cf76d30648 *DESCRIPTION
1e7c2bedf179d1de597dbbd4ead3b750 *NAMESPACE
f6a36aa985ff5bbe20de5370578deb64 *NEWS.md
7022e31dfd537683d32d21d280167c15 *R/data.R
306b0c829ace372b1b5e2136d2880f7d *R/data_validation.R
2fb683650bc97821791b1f4a50a844d5 *R/duplicate_classification.R
02a98f5f90440d7dd05c7d545ab18ffc *R/ka_ks_analyses.R
f9cc193d7ef77aa0b6fb608eecacfe40 *R/utils.R
3d6dd77798717feb27fc746e3e89bc98 *R/utils_duplicate_classification.R
7937afaf1677e72d06605758c12e72e9 *R/visualization.R
73b343f3b14a2c8f45c59c62fe5c285e *README.Rmd
269af127eaae78e1cec53f05ad459199 *README.md
5795753ec3ba0d218651e3246a9355ca *build/vignette.rds
e2fd3cb898183f8546a71f12862d9d8b *data/cds_scerevisiae.rda
a2d0ade5c0a0833abd8edee3ef1e6871 *data/datalist
fdde5b6a05b74dd5a64a79a8d4bf6747 *data/diamond_inter.rda
b8e584b5b2a87d150d1ed9a673b2a0a8 *data/diamond_intra.rda
3c994da79b462dd7cc230e602276d3b0 *data/fungi_kaks.rda
181d4d8c6acf5b570c0243819ae22938 *data/gmax_ks.rda
c5bd7c497c75edd77b22c1db607e1023 *data/yeast_annot.rda
94e426f320480dd96ab01a8b3fec550d *data/yeast_seq.rda
58dc07f08f79d259f9c59597beac3ce0 *inst/CITATION
7ec8ac14fdd273636d5d3cf07123f5a5 *inst/_pkgdown.yml
30355e71cafa26b38ca5b46676e5ae21 *inst/doc/doubletrouble_vignette.R
ce45a76c5438764a1b821e7b8a203769 *inst/doc/doubletrouble_vignette.Rmd
65ff8cb80a095f65cc20008a5a807aba *inst/doc/doubletrouble_vignette.html
e3fa3708942a28c1636803eb8ee88c80 *inst/script/data_acquisition.md
4e93576728f07ea02e7d5b7d467fe454 *man/cds_scerevisiae.Rd
a42e35145881cd7833b8ad1ac04b7d04 *man/classify_gene_pairs.Rd
98a882d5e57ccaacc6497e15c1f6b593 *man/classify_genes.Rd
fa201685017329d7239f7da423095bc6 *man/diamond_inter.Rd
b890a85e68829daee8871e58db8eb84b *man/diamond_intra.Rd
cc525d1e814b8ad9985c91e8ba0037ba *man/duplicates2counts.Rd
440373bbf6ded52871950f8546ef99bd *man/figures/logo.png
1af3c7adcf208a4b2842b7b7338c5c4c *man/find_ks_peaks.Rd
75db1681b9ee2ab7427b4b478bb7120e *man/fungi_kaks.Rd
9913f2de944ecc2a9077bf015de7017d *man/get_anchors_list.Rd
bc33027f30c1f39ccea59797e7819759 *man/get_intron_counts.Rd
fcbee2a764c292564c445a946987e5ca *man/get_segmental.Rd
df40c95c4b19f3a3d90c5a64b02951de *man/get_tandem_proximal.Rd
fe5491f034732ad07c2d545e2013e588 *man/get_transposed.Rd
b7a63e20c1981c6433fd6b5ae57c988f *man/get_transposed_classes.Rd
142a075cb074ad667dc2e9ffc6848a3d *man/gmax_ks.Rd
3231a437c8b666a4613cae5156ed5e39 *man/pairs2kaks.Rd
3819e3fed542d047a8c1f83a5c0e3ca4 *man/plot_duplicate_freqs.Rd
a950991376c5d4f7e759f61f7eb61759 *man/plot_ks_distro.Rd
88162cff1bb16a016cf2eca13b329471 *man/plot_ks_peaks.Rd
141cef7a7726af5e316c76182e762d78 *man/plot_rates_by_species.Rd
ff4d9ea8e51f2fc829fe264f26b4d84e *man/split_pairs_by_peak.Rd
52db5e2f92d9d9b1c971281dc80fde0e *man/yeast_annot.Rd
789e8be3b2f5b925261cc74a80ea49d9 *man/yeast_seq.Rd
d07cd1d68833f71e826bb9b27f32bc58 *tests/testthat.R
db6cf6bfcc7723816aaee8bfadb4121a *tests/testthat/test-data_validation.R
ed5bdd4767fd29c6a2f58157f1c0a65b *tests/testthat/test-duplicate_classification.R
1045d6fafcbbb95d9b3d53d554a08c28 *tests/testthat/test-ka_ks_analyses.R
85724d11ae049de88eec280105bb0ecf *tests/testthat/test-visualization.R
0fe7e4f321baf00e7280b54a15b32b26 *vignettes/bibliography.bib
ce45a76c5438764a1b821e7b8a203769 *vignettes/doubletrouble_vignette.Rmd
