b4e17e3433c196c7520e5601fb1f5522 *DESCRIPTION
540f4f932f828bca686b2f1f0bdcc79c *LICENSE
a80f4d6486dbe1ae5df8509b36a745bc *NAMESPACE
e8486dbf12108fe327a31c784b3ca31e *R/1_prepareData.R
b2dca320b755d6ef2fa6d6f89983913d *R/2_transformData.R
38cb819112b6b1fda45dbe4deea201a6 *R/3_generateClusters.R
18a72618dced78d7a1a7f2cd4f791faa *R/calcCounts.R
a198bc5e47e083d65ec473ab3245050a *R/calcMedians.R
4fc3c6d74060f38a1cc1559c4be93265 *R/calcMediansByClusterMarker.R
f164ec91027c5047ef6da35e89cafc6c *R/calcMediansBySampleMarker.R
7fbc3152c2cb06682ef706c218262187 *R/createContrast.R
d8f9f81983a132994b81eb392447b382 *R/createDesignMatrix.R
d7817b836a9157f6a9cee4589b7bad18 *R/createFormula.R
817b85107fb6c48b41e2b7d93d2aa659 *R/diffcyt_wrapper.R
9072587baec43ee2fe7d1d831f8370d5 *R/plotHeatmap.R
873266408b50032c777acbe5a34ec394 *R/testDA_GLMM.R
ae33eec474b619a117452c4e86454242 *R/testDA_edgeR.R
6a53064606889ac396c1cd7b49fba2e9 *R/testDA_voom.R
ce016909cdcf6a7aad97ffff9cc02b98 *R/testDS_LMM.R
61bb5fa4604a2871cc3fec23df1f0d11 *R/testDS_limma.R
b72edaaaa40032e2c9e882cb399b7919 *R/topClusters.R
0f43c17a730a4bd6cb4e50a1c134eb1b *R/topTable.R
6a231a3967da0304cb3cac476de80c1d *README.md
82b8295b866d340b5dc1585ce3076019 *build/vignette.rds
89672b86f7342e7df58155618d2fd67f *inst/CITATION
092034554e3302abbe6e345545e42de7 *inst/NEWS
5c28f431a8e92e3557f1dd7120521fbc *inst/doc/diffcyt_workflow.R
adf4f4226a7c6c53ada9265975879550 *inst/doc/diffcyt_workflow.Rmd
3cd672761ac9c91a315f5a9ee6e1d991 *inst/doc/diffcyt_workflow.html
ed2713deed7854a96b99076969658aa8 *man/calcCounts.Rd
cd62b0e6d2aa6c613d1dbcf278aacb11 *man/calcMedians.Rd
3eb5cccc3f54aee3ddf850c7ce689efc *man/calcMediansByClusterMarker.Rd
4c3365d302120971dc2341b64c41ee3c *man/calcMediansBySampleMarker.Rd
324e5a1b97535d4c2ee73f78640fdfef *man/createContrast.Rd
1d51ab650824c1986a857df09136ebd8 *man/createDesignMatrix.Rd
3a0b73c74a7eaea113f69c918ffee996 *man/createFormula.Rd
0c4095c8d925c0c4ca1333af41d458a3 *man/diffcyt.Rd
08176f2640da5904a86098258c0d0dcb *man/generateClusters.Rd
a166a19b30ba58b84a5f222cc302cd9d *man/plotHeatmap.Rd
9139380484507adcc29bc38e8c1afd27 *man/prepareData.Rd
f45f0c773715071152d6aada10b44df8 *man/testDA_GLMM.Rd
259ee38121f817dfe443eb53aea52961 *man/testDA_edgeR.Rd
3476406c3a4e85b49a3baee4e32d03db *man/testDA_voom.Rd
d5ff46aafd046c0fc450421cc43a541f *man/testDS_LMM.Rd
51ad9549c520cc04605fd278fbc40b03 *man/testDS_limma.Rd
906ddc5f8ebe55135a3d0cb5b962f381 *man/topClusters.Rd
020af2e5b9121ffae0ac612780205b9a *man/topTable.Rd
4f84c7d11a75c3dcc9a49cc436267e47 *man/transformData.Rd
c2ed414bf8275eee2f928b93c49ac23a *tests/testthat.R
eeb8fa009ce393b23625c98c5f423832 *tests/testthat/helper_create_example_data.R
e7a2cf6cf082451dcddc88a0ef64d052 *tests/testthat/test_prepareData.R
8aa70be1a974de1b9c22a81693105994 *vignettes/diffcyt.png
adf4f4226a7c6c53ada9265975879550 *vignettes/diffcyt_workflow.Rmd
