0573e1a835fd81323f86595ba8fe08b5 *DESCRIPTION
e7f59f8b6749866fe04fa51fe20d7662 *LICENSE
0432f2176ea7062ae8b87f02b26c4287 *NAMESPACE
80e4ecd4cf04612584b09ce349513047 *NEWS.md
b8739172373440fe8ce5181e4d300bfa *R/check.R
6c8b826769885413ae7685b4f7dd6eed *R/constructMarkovChain.R
831fb5ffa4c95927ca3dd91b942a4b32 *R/dandelionR.R
658591c11112a1d3920f6efe67dbc782 *R/data.R
cb172b663653a1afd72c72acca6980b2 *R/determMultiscaleSpace.R
140887ffe7c5fd140f1eb3292a4aad7a *R/differentiationProbabilities.R
8a2e233ef64d9a650896e3a0eab09b75 *R/filterCells.R
14227ee62254520b711ea4abb6a1ff4b *R/getPbs.R
97ea9e6a4cd05d5844a6f0fedc23ba95 *R/markovProbability.R
cf485309d80bccdc4717a965452979c9 *R/maxMinSampling.R
690970d4cc08b49c8aa7c883198e5177 *R/miloUmap.R
f0001e70f3215d5c4dc43a951d960f0d *R/minMaxScale.R
72411e4ffcf1aa1e7c69ec9692b3c928 *R/projectProbability.R
4b90e8886f357737f66ac9fa586fcbdb *R/projectPseudotimeToCell.R
ddaaf17b29180d07dfabe535f6b582e6 *R/setupVdjPseudobulk.R
4dd56b5714afc5ffc45b127ab8b1d038 *R/splitCTgene.R
90aa79b3638bb1c4e7b2103c205e897a *R/terminalStateFromMarkovChain.R
24c170f440c862bc5aa8ac24d1846f03 *R/vdjPseudobulk.R
63c9d94e396239a5261a13059c2823d5 *README.md
b2cacacb35af4e8f555ef3afa8f11cbd *build/vignette.rds
069baa670e5151d00fae112e88d196a9 *data/datalist
b730b27cac3edf99f293e2842298dfda *data/demo_airr.rda
4abc74abe9c7733efa4ab303a048caf1 *data/demo_sce.rda
5cc013b7aa4acab2cd296c825f4d0c28 *data/sce_vdj.rda
bda30f7e2dfa9bcc66bf09ceea7ca6f8 *inst/CITATION
b56cff53b88add535e68d14be92117ee *inst/doc/dandelionR.R
d9da8b8f3e14e67156ddf3fca9fb25d1 *inst/doc/dandelionR.Rmd
03fd9e256eebb0e49e0d67538c88f75b *inst/doc/dandelionR.html
4874ac7907bacd3b666421e5109eb1ef *inst/doc/dandelionR_with_slingshot.R
d1814866b56be91b2269302f293b8b3b *inst/doc/dandelionR_with_slingshot.Rmd
18b72b9ab15043816c0fd3ac731e39d9 *inst/doc/dandelionR_with_slingshot.html
9cb9585cb8249013dc225efd477fc045 *inst/doc/vignette_reproduce_original.R
1c87a55b214ed5d641b21240c94af31e *inst/doc/vignette_reproduce_original.html
103486827e6846183afde24e5388add8 *inst/doc/vignette_reproduce_original.rmd
b223d3dc39a5997854b6f539ef178c5f *man/chainAssign.Rd
bd267201f7dc08b868280547aa6e2b47 *man/dandelionR.Rd
bbc4766bc588771a09a52b386ccac76b *man/demo_airr.Rd
bff866cdf0d9bd0268ae743519cdf68f *man/demo_sce.Rd
5496548cefa3ce9c1b3b81f1183e49c5 *man/differentiationProbabilities.Rd
6be26e8db82a6a201e48ce2c59ddb59b *man/dot-KNNind.Rd
d5cb1ff56c241c8025e091ef62125799 *man/dot-RANNinx.Rd
137daf5d5ee9d545b04d81596b6666b3 *man/dot-addColData.Rd
b5c43334780953a89e23a31a7696c230 *man/dot-allowedChain.Rd
6fb1dde51a917c1e4653fa66207ca64f *man/dot-calDif.Rd
234fa4c751d4300c901d4dd3b12e5501 *man/dot-classCheck.Rd
210341c91c4d3b62800f73306f4b4a7a *man/dot-collapse_nested_list.Rd
33634fc64fe4bb129f38975e0423bb1d *man/dot-constructMarkovChain.Rd
fdfa72d55bc1e5202989ec97712ecba4 *man/dot-determExtractColN.Rd
77e729c8b595d2ddcc125031a2db186f *man/dot-determTerminal.Rd
d3d1cbe5195b108ae46896cf1ddbbc32 *man/dot-determineMultiscaleSpace.Rd
847c3762c62f947be145f4e4b027187a *man/dot-extractVdj.Rd
43711193c167f34656af447ba7dea280 *man/dot-featureSpaceConstruct.Rd
89d8fb0d24567bc94551682d0a522256 *man/dot-filterCells.Rd
ceeb23aec367dd25594b07e739dd8e4d *man/dot-filterProductivity.Rd
11e6417ab10f033e751ca814a1334072 *man/dot-filterUnmapped.Rd
f93804102d2259b915318b22eb466773 *man/dot-findNewWaypoints.Rd
812668cb917725005b3e29ef2e71b070 *man/dot-generateExtractColumn.Rd
bc1e7a5ff6bdc52dd5da7db0bc0d5d7c *man/dot-generateExtractName.Rd
3288ed1091ac19b86a251f88084135ce *man/dot-getPbs.Rd
727adec32a96c989571766d4a9e3e023 *man/dot-getPbsCol.Rd
967d6f9fb2528edcce66d38aa6508014 *man/dot-getPbsPerCol.Rd
beee10f4c4861d4b208756a1337e2b6e *man/dot-maxMinSampling.Rd
e418bc88591015ad744b0319b27ac426 *man/dot-minMaxScale.Rd
c906483fea10db75eaccfe8a1720bd6d *man/dot-normalizeFeatureSpace.Rd
7f3639345823f9d241815f1ae2b38a73 *man/dot-normalizePerVDJ.Rd
f49af944819aacc67ea6513ecdb84f0b *man/dot-packFeatureSpace.Rd
f8b30bef7fbf7376b269e7970b26a38f *man/dot-removeEdge.Rd
a7f206c4531db0e128f382b04d489eeb *man/dot-subsetSce.Rd
be3b096ccd4ce1b4db1f845a7274452e *man/dot-terminalStateFromMarkovChain.Rd
de1a37fef055b004a17b9e4bbe955f3e *man/dot-typeCheck.Rd
48e6ae0a22308412e922489707ccfd58 *man/dot-waypiontsPerCol.Rd
dcd84009bf68962e39592d4862519967 *man/formatVdj.Rd
ac605933d2540f7007ab2c79916ff0ce *man/markovProbability.Rd
3433ce2fb9b077d92b6be8ceb3d1f859 *man/miloUmap.Rd
f49c9709759245422f0736cb34d7a2c1 *man/projectProbability.Rd
771f189144c78079e4b88fdf3e1017ec *man/projectPseudotimeToCell.Rd
af08bbbabc4da6a37dbd8fb3b689f91d *man/project_single_value.Rd
47205a48a95e0c903b6872d76c0c8566 *man/sce_vdj.Rd
785bef08c9e7de4881f9a2a0f64de229 *man/setupVdjPseudobulk.Rd
aac8db637884a16099eb04109549ccf1 *man/splitCTgene.Rd
4839b1f4033b4fdd4f3604d150199f4b *man/vdjPseudobulk.Rd
4df2b64faf945c835f381fcb23cf06e0 *tests/testthat.R
ddee3272df95c00aeacb1fdcf6ff7e96 *tests/testthat/test-check.R
fc056393ec06ce3592bf418d75c1720a *tests/testthat/test-filterCells.R
fdfb1fd131255bba86a79fbcf6bb942b *tests/testthat/test-fromscRepertoire.R
fd9f68dbbe5894fec29410504f1e714f *tests/testthat/test-getPbs.R
02ffb510a7bb2e7eb6ab7a539d4b7419 *tests/testthat/test-markovProbability.R
26ef025357220ed979fa44e5ba100a00 *tests/testthat/test-miloUmap.R
909058f7d51c08fc47e46bf185112685 *tests/testthat/test-minMaxScale.R
6794d31e32beb5eabf160273adf83c1e *tests/testthat/test-projectPseudotimeToCell.R
4569dfa79f08c2d2504d4b8439dc554e *tests/testthat/test-setupVdjPseudobulk.R
65bbd5b1704212756077adaab7849f57 *tests/testthat/test-vdjPseudobulk.R
d9da8b8f3e14e67156ddf3fca9fb25d1 *vignettes/dandelionR.Rmd
d1814866b56be91b2269302f293b8b3b *vignettes/dandelionR_with_slingshot.Rmd
103486827e6846183afde24e5388add8 *vignettes/vignette_reproduce_original.rmd
