c53e0ddfb8a66a6c22ef6922afe5a619 *DESCRIPTION
3000208d539ec061b899bce1d9ce9404 *LICENSE
485ffbcbcdf78b986aeb3458c4daa180 *NAMESPACE
edd0a2b3b8a82b070d651e634f210943 *NEWS
e59fe6bab16a40f70f406fd9215d8f52 *R/RcppExports.R
4c67b349a8832116a92c8cb239053c60 *R/allClasses.R
26ed33828315592f0b35d228d49e3469 *R/allPackage.R
9a6f3602b4941ea3571ffb087b046552 *R/chimeras.R
26f87033a5a46ff5ea13ff7ecccb2563 *R/dada.R
aae3c9e3c61c1a35b4f037242b1d5ba7 *R/errorModels.R
509f64ef35d429b8916da5532a496ae9 *R/filter.R
30bbda53ffcd8d8445a4a94fddd7a5da *R/misc.R
ba7b387576441f547e36aaa7534e775f *R/multiSample.R
7fe267caba5eddc7a40bc6effbae5d3b *R/paired.R
9cf67bbee52026abd30119e6649cd684 *R/plot-methods.R
371d7ee866323bc299589868bde57704 *R/sequenceIO.R
346c1b6e5bf002a0d88512b06654d094 *R/show-methods.R
10280d04aab7db0c65c6fb20bb3d36bd *R/taxonomy.R
6d072f499c1d7cb3d8a106a50aa3a2e6 *README.md
1198fe50248964dc45f908a8157f1fa0 *build/vignette.rds
db035a4edda29d1ef8c811509d633f3a *data/errBalancedF.rda
daac4d02da975665442fda832484b4f4 *data/errBalancedR.rda
eed0ee3a088e0655a25695e03e27c2aa *data/tperr1.rda
e2892ce85b1501627c0d8ade3b249f41 *inst/CITATION
1c178942f4f1bceb0a04f5fc067400d0 *inst/NEWS
853e32ee0097942f6e658cbb97bfebbd *inst/doc/dada2-intro.R
de679efe2df833336da741cc969f1885 *inst/doc/dada2-intro.Rmd
46d667995beaffee93f57c6cced55591 *inst/doc/dada2-intro.html
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50eec794dbe8d0c8cc0dbd9f18a34aeb *inst/extdata/example_train_set.fa.gz
609d81cffe325578efb7f5e65df94b24 *inst/extdata/phix_genome.fa
e793b1e9765a4bd08abcf82f00bc1db5 *inst/extdata/sam1F.fastq.gz
fd3f8dc736ff920e7034df3f9d9d9f8a *inst/extdata/sam1R.fastq.gz
a4f0c4dd7d790dd6c5a21752d0cdaf76 *inst/extdata/sam2F.fastq.gz
b9c2e6f057807a3f62b1881cd08fe5e5 *inst/extdata/sam2R.fastq.gz
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9d6dacb5ba5542a1683d4e6f83231f6a *inst/extdata/samPBprimers.fastq.gz
6d09080e8eb59c9974fde143435a3639 *inst/extdata/ten_16s.100.fa.gz
3f145c720145f91892e8046f3f4d17c9 *inst/include/dada2.h
5b98e74295222893a31f401cc2eda318 *inst/include/dada2_RcppExports.h
7a2c8e9fb0e58e93e156a6d5f20f3d84 *man/PacBioErrfun.Rd
78dfa35eaf2d15f5f9ea1995c87d0457 *man/addSpecies.Rd
af8689a02e2a37c105e2dafc984a4cb9 *man/assignSpecies.Rd
6ec8ef88d07ce104c352a46fa19d9319 *man/assignTaxonomy.Rd
7c8de6f98a87b8c684f39715f3180750 *man/c-dada-method.Rd
fc499bdf213d2358c1abfa7b63d7c52a *man/c-derep-method.Rd
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479e4bdeb7ced9fafc528063dbc6c826 *man/dada-class.Rd
83919a2f8f59778f510d6125c197eb36 *man/dada.Rd
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b936036a56cc2a8336eda4a27a8c4eb9 *man/derepFasta.Rd
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a8aa0d5314be060b6bb6b084072b7f31 *man/errBalancedR.Rd
4055e31c4df79cda6199640f0937beda *man/fastqFilter.Rd
0a75a1085f648ceb840c3ea8554ed5b0 *man/fastqPairedFilter.Rd
58bdec7942eb306920751aeb79ad5aa4 *man/filterAndTrim.Rd
472faeb71cc30ef523cfde7ebf7f1eb3 *man/getDadaOpt.Rd
0923487d49cdc56106f2dcdd63039360 *man/getErrors.Rd
4f5207bffee251bbbd7511ad12bb2eb1 *man/getSequences.Rd
9093a801c492a351380830c3a6b7d514 *man/getUniques.Rd
9b626fb3aa13d44acd628efe77931670 *man/inflateErr.Rd
ea282d2f528fe8f617a54415f8f1b26b *man/isBimera.Rd
4474e1a2bf62631b36c492340b03d537 *man/isBimeraDenovo.Rd
aac9db11b59dd5328b80a16684fb4d03 *man/isBimeraDenovoTable.Rd
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d78dce9dc97b9ae15e136c9e94d1660b *man/isShiftDenovo.Rd
bc271c85ccc8d7a29b38f38434b95801 *man/learnErrors.Rd
b308a07c5de13a8f587ebbf2ac00bcda *man/loessErrfun.Rd
50521c934c721463e09ad1348aa47454 *man/makeBinnedQualErrfun.Rd
594c875d10afa3e7fb16616704e769d6 *man/makeSequenceTable.Rd
4b59bb10d493758ce3cf1547fbc7319a *man/makeSpeciesFasta_RDP.Rd
9eda94d525bfa934fd10ac7befb3052a *man/makeSpeciesFasta_Silva.Rd
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0c9c1c4825d7d33bbf98acfc56222062 *man/makeTaxonomyFasta_SilvaNR.Rd
0c269cbcc7c2d90f1c4790f394af8235 *man/mergePairs.Rd
8e572ecb24865de55bd49880c196ddb9 *man/mergeSequenceTables.Rd
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45d1cf28f8bc0c1bb0ca2781a8a12db7 *man/noqualErrfun.Rd
c10d71c84f80cd7cac90931554db5dc9 *man/nwalign.Rd
9a8ec07308d166ea8a446815649f086c *man/nwhamming.Rd
714bb6b4b6326482c1093ef1650b5ece *man/plotComplexity.Rd
97daf7fb7dbdcbaf40cc421ef1c293d3 *man/plotErrors.Rd
43c943c069b1e6a3b76a2037eb1c4a68 *man/plotQualityProfile.Rd
491418c8b06bd7bb8612980e8b21cbf0 *man/qtables2.Rd
676c6f7402e6cbf5f63c6f1c45df3d89 *man/rc.Rd
daf3a9c9a7fddb1573a3f73d690226d7 *man/removeBimeraDenovo.Rd
6e7e5782f474699720367010d2e2c243 *man/removePrimers.Rd
4128804b109d27848c904afe293f158c *man/seqComplexity.Rd
d5d07540f668f31bbd51e8c3943d9804 *man/setDadaOpt.Rd
9c800307b730ba0a620bd45bf960cda1 *man/show-methods.Rd
32fc372a4af5f0acf0baaff305809b70 *man/tperr1.Rd
d7f212e8bba6d86dc87cf5b76c6f8f0f *man/uniques-vector.Rd
17b389804d6b20c9ef645d54df171d29 *man/uniquesToFasta.Rd
4cc0594e460177aa4fa3f61eb280e9ed *man/writeFasta.Rd
32c51377a4ad0dced656a4b75bafd2a7 *src/Makevars
dd1b263a1c16b18a275b91f09d72532f *src/Makevars.win
2fbb58874152fc8ac48219fde20e945d *src/RcppExports.cpp
b2f86525d58e02cecea2be173b6ab7b1 *src/Rmain.cpp
7e6cd55e7a5f3afbfa986189c44f52ad *src/chimera.cpp
ceab5922dc9e3785185c7c4339e33212 *src/cluster.cpp
ce866b6b20c6ac29e10ffd18e8d8d106 *src/containers.cpp
033ebaf2190856688f6833394ebbcfc6 *src/dada.h
d71f4d7709a31be49ea63bae48ba93e5 *src/error.cpp
dab4e9dfb33bd4ae2463ab0af682605a *src/evaluate.cpp
e09add23df6875b7c31eb27c3206240f *src/filter.cpp
33c3d8c274228aa98c08476d01b06aed *src/kmers.cpp
b0567850c645b211df2c14bea02ec86b *src/misc.cpp
2595830db32dbb7a11c968fb9d6f75da *src/nwalign_endsfree.cpp
b34ea2c1371da8214d7a393140b90d3f *src/nwalign_vectorized.cpp
e55004c9b4c8be338dbaa5f4d6322d3e *src/pval.cpp
e1e67a332626e61f5f555d46a9709690 *src/taxonomy.cpp
ee480fa2f8f827c3694e64d65b1e3d57 *vignettes/Clearness.css
de679efe2df833336da741cc969f1885 *vignettes/dada2-intro.Rmd
