b981012579d0b4c7b39650c562a98744 *DESCRIPTION
d735880d594a0d9112c46a00564e09ea *NAMESPACE
84cf91c0a9b6fb743f5c87d1e289eabf *NEWS
85644d3a6e2f3c346696caf835f3ec20 *R/enhancerDynamics.R
da8cd2cc0f7c10f8727dc6313a7396af *R/enhancerPrediction.R
c2bd2675c40f6d6a6fa0897f17eb6668 *R/enhancerTargets.R
7ca6051c516c311cf7056bab736b0807 *R/functions.R
5faf8e27a06e313dcd0cf706f271d6e6 *R/get_superEnhancers.R
780153e454f8a4e90c564c12962b6b17 *R/normalize.R
40dfc04ef37a98e88d278dae26f6417f *R/saveFiles.R
de17a2d5932791f77761423b449058e6 *README.md
8f9c7ca9941890a549ee3f227ae4e7f0 *build/vignette.rds
8e69943b0f0cb693faee81f41bfe93be *inst/CITATION
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d5f8c99af91b5f504d62ecd127a17e8d *inst/doc/crupR-vignette.Rmd
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3347dd15a5f5ed1d1da944e173df2dd1 *inst/extdata/Condition1.H3K27ac.bam.bai
50031bfb5a0979e845d604d8241a02df *inst/extdata/Condition1.H3K4me1.bam
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bf4d81d05efcf85da3934a48209820d5 *inst/extdata/Condition1.H3K4me3.bam
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936831f5e973432988935efaaec4a95a *inst/extdata/RegulatoryUnits.rds
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1eff60c7680406abaafecfc01f5d57bd *inst/extdata/active_vs_inactive.rds
9e91c853b85a39d8ff509db50604b432 *inst/extdata/condition1_predictions.rds
49a2cd549b8559cabb990c167b4b52db *inst/extdata/condition2_clusters.rds
ba7afe315dcc79c48c5cb1b9a46aba32 *inst/extdata/condition2_inputfree_normalized.rds
d133ae0512a6188a8c43928010297940 *inst/extdata/condition2_normalized.rds
957ea7e9525ec21852c1ad5fb093e4b6 *inst/extdata/condition2_peaks.rds
d75b10f976e3dc32e928f43cf03e7127 *inst/extdata/condition2_predictions.rds
dc1b6161a1400c7a3e33709d0f29215f *inst/extdata/differential_enhancers.rds
5a0a6f25d1512fd8949738aed033a5eb *inst/extdata/ecdf.rds
19cc78c795772ad9014e7f7629c61316 *inst/extdata/enhancer_vs_active_promoter.rds
24fa0625f446b6bbb9c14118b5649d52 *inst/extdata/expressions.rds
a386e78b186dce6b535a1bf698a76641 *inst/extdata/mESC_mapq30_KR_all_TADs.bed
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de1683cd2445ff8d77f233aa7dacd808 *inst/script/crupR_example_files.txt
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713ff5ed507007db8403f99992166ae5 *man/crupR-package.Rd
e37f181591a08313d73fecc12a4be626 *man/getDynamics.Rd
f7f82e306b58db8428665844a9779f79 *man/getEnhancers.Rd
f509aeb10093d932922efa3aafec6ca3 *man/getSE.Rd
e2ea169a9d29d57e0dde0a92dcc383db *man/getTargets.Rd
567062ee22be1536a9d2b02ddc349bd5 *man/normalize.Rd
e98b97d098b45e2a215b5b90a16a939a *man/plotSummary.Rd
2b1cf962afc48c6be3215971eef709a3 *man/saveFiles.Rd
5f07c93253b217bb840bb701eec12b10 *tests/testthat.R
f43b5ef61becf629ce263b8005dfa32d *tests/testthat/test_dynamics.R
2f3d186f57fd3f7311fcee01d7ec0cf4 *tests/testthat/test_normalization.R
31310ff47d58fe92e25439df19b8fa21 *tests/testthat/test_prediction.R
ae911a380d10150046f561fa425ed0ce *tests/testthat/test_saveFiles.R
bc14bc828f7d7c85fc35f107ab3d1f18 *tests/testthat/test_superenhancers.R
a24a0433b6af125fa18fb6faedf40f9b *tests/testthat/test_targets.R
d5f8c99af91b5f504d62ecd127a17e8d *vignettes/crupR-vignette.Rmd
