Package: cosmiq
Type: Package
Title: cosmiq - COmbining Single Masses Into Quantities
Version: 1.44.0
Authors@R: c(person("David", "Fischer",
    email = "dajofischer@googlemail.com",
    role = c("aut", "cre")),
    person("Christian", "Panse",
    email = "cp@fgcz.ethz.ch",
    role = c("aut"),
    comment = c(ORCID = "0000-0003-1975-3064")),
    person("Endre", "Laczko",
    email = "cp@fgcz.ethz.ch",
    role = c("ctb")))
Depends: R (>= 3.6), Rcpp
Imports: pracma, xcms, MassSpecWavelet, faahKO
Suggests: RUnit, BiocGenerics, BiocStyle
Description: cosmiq is a tool for the preprocessing of liquid- or gas -
        chromatography mass spectrometry (LCMS/GCMS) data with a focus
        on metabolomics or lipidomics applications. To improve the
        detection of low abundant signals, cosmiq generates master maps
        of the mZ/RT space from all acquired runs before a peak
        detection algorithm is applied. The result is a more robust
        identification and quantification of low-intensity MS signals
        compared to conventional approaches where peak picking is
        performed in each LCMS/GCMS file separately. The cosmiq package
        builds on the xcmsSet object structure and can be therefore
        integrated well with the package xcms as an alternative
        preprocessing step.
License: GPL-3
URL: http://www.bioconductor.org/packages/devel/bioc/html/cosmiq.html
Collate: combine_spectra.R peakdetection.R eicmatrix.R retention_time.R
        quantify_combined.R create_datamatrix.R cosmiq.R
biocViews: ImmunoOncology, MassSpectrometry, Metabolomics
git_url: https://git.bioconductor.org/packages/cosmiq
git_branch: RELEASE_3_22
git_last_commit: b743b8d
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: yes
Packaged: 2025-10-30 03:20:56 UTC; biocbuild
Author: David Fischer [aut, cre],
  Christian Panse [aut] (ORCID: <https://orcid.org/0000-0003-1975-3064>),
  Endre Laczko [ctb]
Maintainer: David Fischer <dajofischer@googlemail.com>
