3d4981ba6b19014d740c56ec7a710754 *DESCRIPTION
13ce9ee134b7cca8cd6793ef9e6dda1d *NAMESPACE
0ed3e99931df3acdf9d965204eb03dfa *NEWS
aeb8ed797e1b6fec4ac5ad2264a27799 *R/GR2fasta.R
3d978a65f2a07468953fa831e5215bae *R/GRanges2ucsc.R
e0b7aa763a1516352a32126ec1719f08 *R/GRangesInPromoters.R
e770fca661638743c3a236590dbd8936 *R/GRannotate.R
10a0db1e8c77cd2c7aedeab333621d45 *R/GRannotateSimple.R
2a09b9b5c9a0a95ead1de4c4b839b574 *R/GRbaseCoverage.R
07ab24de30ea23ae7802b5a16e139a6a *R/GRcoverage.R
cf307378d504cfe31f3ec0083d1d68b0 *R/GRcoverageInbins.R
52274639c349cf4161acf323f0dad27e *R/GRcoverageSummit.R
c693076a65611d7d89d0a4fca5d76896 *R/GRenrichment.R
a6f4e44761fc0b34d3d11872f90e3a23 *R/GRmidpoint.R
d7eb6524d775abfbacb879bf99d3555e *R/GRsetwidth.R
0e4e8e4bed62930c74f5105824e6cc9f *R/TSS.R
3271e82213358ae454169ea0c3a7e823 *R/countOverlapsInBins.R
0a8250907377f852823bec4ec2a88329 *R/distanceFromTSS.R
386f0c47d27c70d87143a1aec6c72639 *R/enhancers.R
8bef4ea71c9d37e78fe20b14966df700 *R/featuresLength.R
ea6ef73be04c51828ee001020c318cb7 *R/findLncRNA.R
d90ecc68dac23e76effe06563d06c97e *R/getPromoterClass.R
8967440726e5fecc7d4468bfc3441346 *R/heatmapData.R
7da30b20ed0a9e8d23e5e407dfe828be *R/heatmapPlot.R
9473e2ae222bd01edfef22914da64239 *R/makeGtfFromDb.R
5066a6fe4c79baf398c8985706eff7c7 *R/matchEnhancers.R
64bdfae404b3c4fecc402ab2d8072470 *R/overlapOfGRanges.R
52a85de85db1ab667a9ace721e9cb909 *R/palette2d.R
7f7ae2fa2c166dce2e14232c3600b0d9 *R/plotStallingIndex.R
8e19a74ebdc7098e3bfb01f4be830d48 *R/simplifyGOterms.R
dbe5e69650890240796bdfe21dc60d63 *R/stallingIndex.R
9257077aa4507f6635b3cff9f72d8e7c *R/topGOres.R
0dcb73b649a9f81b8f17a458ea497e4f *R/ucsc2GRanges.R
1f1e2cc8085f925b70994ba678dbaac4 *R/unionMaxScore.R
9d40af3a341e709427d12435fb99663f *build/vignette.rds
f5422f73c66809fa6098b79a27cd6e19 *inst/CITATION
ebaed89f3b17e1e6afb32d1ffd5736f2 *inst/doc/compEpiTools.R
f475e93aa3a224ef622cb7c84e7e7165 *inst/doc/compEpiTools.pdf
7f8b2b311468a7c0b2a25ee37cda3431 *inst/doc/compEpiTools.rnw
0fa7dbb6f77a9b3b9c0a9a958674da57 *inst/extdata/CGIgr_mm9.Rdata
15a21b62a738b7d4620046e43190f74d *inst/extdata/H3K4me1.bam
be1127a64e7b125a3c0bef60fc473aa7 *inst/extdata/H3K4me1.bam.bai
73801a2beaf4c5b4bcdfa8c87ff8cf61 *inst/extdata/H3K4me1GR.Rda
930d338fea33094e4b90fc07fbd1fd95 *inst/extdata/H3K4me3.bam
97677c2b1b20af209729c1566c2ca586 *inst/extdata/H3K4me3.bam.bai
ee9cf3f69002806f76f9d4ba870ca6fd *inst/extdata/H3K4me3GR.Rda
da3ba00d010b44cb30f7826530bd09f5 *inst/extdata/Pol2.bam
ab71dccbd8ba9ddcdcdf0ad7ee93e660 *inst/extdata/Pol2.bam.bai
19ecb2f1f99f478a8e8162de98ea85f3 *inst/extdata/Pol2GR.Rda
12201c23cd2a92034559dc4f324e2987 *man/GR2fasta-methods.Rd
fcadbb8d5b3b9356c858fec57934e65c *man/GRanges2ucsc-methods.Rd
beef482a1c9367bb8319d573afc8b013 *man/GRangesInPromoters-methods.Rd
9d1262a0a006c620b54a3d03471edc85 *man/GRannotate-methods.Rd
2d996d7774035af0f4b8b9db93093587 *man/GRannotateSimple.Rd
f8aaabfc74eb2cb7a2e9b93d056518be *man/GRbaseCoverage-methods.Rd
a38cc99b53454049be94d2d5e7ea6b56 *man/GRcoverage-methods.Rd
587500901cec64ea28abb5261f95b33a *man/GRcoverageSummit-methods.Rd
07542d1c417cc638c7006276dea7757c *man/GRenrichment-methods.Rd
9d89a8000fb489f6095f9f844cbf7bf7 *man/GRmidpoint-methods.Rd
b0c7e1ae03da3acb360131cf3a884284 *man/GRsetwidth.Rd
659e642ec79f1a50edd8f90ed0dc11b5 *man/TSS.Rd
f5ed2e80a7c3b4ac32ac4126a91d16cf *man/compEpiTools-package.Rd
d0fe10ea79aa36c70c55d871b8113936 *man/countOverlapsInBins-methods.Rd
ed4e3ecc0b186094dc2875e84758af30 *man/distanceFromTSS-methods.Rd
1d9f4943dafda0b85abd21f6f02d9aa3 *man/enhancers.Rd
0f419276fe41112ac6cd7ea58fd4ca0c *man/findLncRNA.Rd
5af9b073f106520f12dc4295e4c386d7 *man/getPromoterClass-methods.Rd
1b435183aae0d684d033c5b913504ed2 *man/heatmapData.Rd
2d0fac52c6e566680d21317c5904c87d *man/heatmapPlot.Rd
9c1118f76c4c6d28bb02474f4bbfbff7 *man/makeGtfFromDb.Rd
eeded7971b0a95c32910c456b50ddeb2 *man/matchEnhancers.Rd
99e34dd468d4a43c7a461907a5d45591 *man/overlapOfGRanges-methods.Rd
92e386087177460f1d8033d32a42329e *man/palette2d.Rd
63632147e247bb59f08e20af5e39c959 *man/plotStallingIndex.Rd
549c89810e2c20474dcdc43f7b242abe *man/simplifyGOterms.Rd
029e55ed76d8811a35d20ec4ca766689 *man/stallingIndex.Rd
a1a2c719e8970ba38aee1cc865bbb6d6 *man/topGOres.Rd
1972f52bcb90bbff1cd2a43c6ac13a13 *man/ucsc2GRanges.Rd
a29c4a0972c8d169e6c1521bac17e20a *man/unionMaxScore-methods.Rd
7f8b2b311468a7c0b2a25ee37cda3431 *vignettes/compEpiTools.rnw
