be9b189eba57347cd43d3fbc86067a7e *DESCRIPTION
8b5e879b5c212796c3c0d9cc29bb675d *NAMESPACE
2f3b10fa0961ae005f0ec891e4c5beed *NEWS.md
413afdff430496356192ca1f118afade *R/AnnotateResults.R
3fe532c29c5eccbb2d19b624dca0bc59 *R/CloseBySingleRegion.R
f68632e7e600c350219f1d4c609dff1c *R/CoMethAllRegions.R
b2ddebc4af9cea326b74fd0822b47cc7 *R/CoMethSingleRegion.R
1205413498b4187522fa93586e5b876c *R/CpGsInfoAllRegions.R
04690d4c484f3116f1e247bee39ca282 *R/CpGsInfoOneRegion.R
342f81ac1fcb59227b79b004aa32c66c *R/CreateOutputDF.R
9fe25b4bff4c38a2dc7391780fc4c2d2 *R/CreateRdrop.R
ba2d02fe91f10c2eb5a2f9e36481d8ea *R/FindComethylatedRegions.R
990fb2ddf63a8c6bf7092bdbfa7e90d6 *R/GetCpGsInRegion.R
b3ea6d6fc23bd16af6aed9648453ffbc *R/GetResiduals.R
352fcd02bf369cf997acdab5f25b7347 *R/MarkComethylatedCpGs.R
9a2965478a324eaf2c7ddefd1c64471d *R/WriteCloseByAllRegions.R
28825adc97c6eea02b42db20afe2ed95 *R/data_betaMatrixChr22_df.R
7066d1a601cd39a14e018727bae10e1c *R/data_betaMatrix_ex1.R
7b7988cc53aed3664c565703f0520ff2 *R/data_betaMatrix_ex2.R
fd86e47d4c3577a40b6efb3c59767472 *R/data_betaMatrix_ex3.R
7914219832aa833ccf259d75b2ad1dd2 *R/data_betaMatrix_ex4.R
b91b08215229f5aed8460c52db7b9cd1 *R/data_pheno_df.R
632ff96facf3ac6a1304f54d98872215 *R/lmmTest.R
52fca9b9df05a44deb868ad9eca76a93 *R/lmmTestAllRegions.R
1e9b714aecb690505fdeb8163dc43d8b *R/util1_OrderCpGsByLocation.R
cab63ab5bd67a4b86e4e94975addbca9 *R/util2_NameRegion.R
50a30aba81f3664513154dbed779e59c *R/util3_SplitCpGsSubregionsDataFrameToList.R
87d0f3ef6798c728a5e376f8d82f70ff *R/util4_RegionsToRanges.R
fac5a2de7c47569e68411c255172e38d *R/utils_CreateParallelWorkers.R
9fc6dc0ead35511118628016dfb1dbfb *R/utils_ImportSesameData.R
1e89ceb05eee51c44ce3298f81a5b4b0 *R/utils_MarkMissing.R
ca8b26b5f580006ab5085d3360768a4e *R/zzz.R
ca3e3f92ec67c960fcc1359ee94a8b32 *README.md
50ac6eb2557a9ac78e740361a0198b61 *build/vignette.rds
25033204ad97fca26d8b7c71876fca98 *data/betaMatrix_ex1.rda
9b324352c7b0d000bd8f420602c7bb9b *data/betaMatrix_ex2.rda
25d516097440b1a778caaff34bca674c *data/betaMatrix_ex3.rda
ceaf217638447ff449f834251abf74d3 *data/betaMatrix_ex4.rda
ec31c94c0cdf26fbe7a412a2411e667f *data/betasChr22_df.rda
6ed352ad506375d3b198b44a67463720 *data/datalist
744604c19949476d5e5762c9cab13167 *data/pheno_df.rda
6deaf0e14f0a3793a25e75e22eab1d33 *inst/bug_fixes/issue6_20210427.R
144bf5fdb65dc90f758896d71715f502 *inst/bug_fixes/issue7_20220121.R
113a3926a2ae563d13697398109a1d53 *inst/doc/vin1_Introduction_to_coMethDMR_geneBasedPipeline.R
f67a7515ca79e404cd9233702d9214d0 *inst/doc/vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd
51c67e9033c6faa058ff64e86444ecf5 *inst/doc/vin1_Introduction_to_coMethDMR_geneBasedPipeline.html
47670a5413e15beeeb6997454688a3c3 *inst/doc/vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.R
6bec012073b90dfc6e1330c5f13169db *inst/doc/vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd
c971c7a7448359a3647a9fb670dd3ed2 *inst/doc/vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.html
fbae3076808051142e407c4c3fc65a6f *inst/extdata/450k_Gene_3_200.rds
acab194eb1cba96518c55cafe70bb8d8 *inst/extdata/450k_InterGene_3_200.rds
39d83533e719e64bfca11306c7d09675 *inst/extdata/CpGislandsChr22_ex.rds
1f92ee2cbf04f0f8f37bd8c7743c0d77 *inst/scripts/createList_InterGeneCpGs.R
50517511337ba82ee92d3bbaaffb7cca *inst/scripts/createList_geneCpGs.R
b47a72a90bc205ef3917ea1943501a77 *inst/scripts/create_chr22exFile.R
570d60022907dc43cd2937dc7c26b69c *man/AnnotateResults.Rd
62135f58d8a5e606729ad9b91aa7a90f *man/CloseBySingleRegion.Rd
a600325b2d3081ac60ea09b0b0c563d1 *man/CoMethAllRegions.Rd
d2bf1d346ba13d5d6bbb83416c4f906e *man/CoMethSingleRegion.Rd
97edc12eb95930f92f0ab9451f1e05b8 *man/CpGsInfoAllRegions.Rd
8dc0a40937d0b23d6d9c834e01c51730 *man/CpGsInfoOneRegion.Rd
645eec39d9a11fe2c0ce8b6edc4ea972 *man/CreateOutputDF.Rd
64c6d5ab3f2b1cb772f8e835fc0ab27f *man/CreateParallelWorkers.Rd
170d4c11cd644cda7238cd718a3f2d03 *man/CreateRdrop.Rd
16d7d5b76a6e5c18cb544eef31a910fc *man/FindComethylatedRegions.Rd
3ba791da789a8d425dc21fcecd5c7736 *man/GetCpGsInRegion.Rd
7d67a54443cd48b5f96e75b9b6f28203 *man/GetResiduals.Rd
fbaf1df317dc1796d18f67c686ae4eb8 *man/ImportSesameData.Rd
a16fb90fa352db56e1343c4eed1ee96e *man/MarkComethylatedCpGs.Rd
ff9c9597b2f351c33093b0d3eab26c95 *man/MarkMissing.Rd
96fb6579aeea2ffd6d403f30801fc34a *man/NameRegion.Rd
9261ad92097d1a5b9e1f032016e7e35d *man/OrderCpGsByLocation.Rd
4a19a950a50633161b23c52e84775907 *man/RegionsToRanges.Rd
df8d074a645a2eee91de6d83fb5dfa21 *man/SplitCpGDFbyRegion.Rd
014d4bedfd096d3854fe7ab2219efa3e *man/WriteCloseByAllRegions.Rd
daf46a84a7bff830ed1be9da30fd0801 *man/betaMatrix_ex1.Rd
b4ea83a29e524d5d730fe453ce7e7289 *man/betaMatrix_ex2.Rd
df9373136bda0665799d6e8f6b26691b *man/betaMatrix_ex3.Rd
186f061a1a8ac75bfaf05f4d5f5b55c0 *man/betaMatrix_ex4.Rd
0ce07ef9ae0dcd4be0a28f5e66a85d15 *man/betasChr22_df.Rd
689461027e74abb73bcc7eabaf73037e *man/coMethDMR_setup.Rd
2e4e36a0cf0c9862d12f97ba117c149e *man/lmmTest.Rd
59089925e81b839645834b6964f41449 *man/lmmTestAllRegions.Rd
a4b23e43774bdb068d0c476de2b14f34 *man/pheno_df.Rd
c6f8ba10e0973eb1ffb774712da8f9de *tests/testthat.R
eb1abe747f4270f147dee27b79d18dfb *tests/testthat/test_CoMethAllRegions.R
ba5eeb36efa4f39f569cd6e8b75e1d4e *tests/testthat/test_CpGsInfoAllRegions.R
34b3d67f3f221d3a90d6c9a7776e8f2a *tests/testthat/test_MarkMissing.R
3480563863e553cd8131e5de61970946 *tests/testthat/test_lmmTest.R
cf19c4cc698fa8ec8e450e1762982829 *tests/testthat/test_lmmTestAllRegions.R
023414be6729232c6a4812796d0fa20f *tests/testthat/test_nameRegion.R
f67a7515ca79e404cd9233702d9214d0 *vignettes/vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd
6bec012073b90dfc6e1330c5f13169db *vignettes/vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd
