c863e209f46ee4605a85cb3bdbfa9999 *DESCRIPTION
7c4e6677d9b81040f9a571755189d40d *NAMESPACE
b63c684a58149dc7c5a8cba5428bde74 *R/callSummarize.R
0bf04ab5efbd4fe19281a413e698d519 *R/cnFarms.R
6b0ffb3470832b927bd43c41dd558eb1 *R/combineData.R
1daa69213040f86db213d00c13416410 *R/correctPkgname.R
045ec6dc110976e460102025678e6dbb *R/createAnnotation.R
cb3f83b028c264411f44bf71f8c9950c *R/createMatrix.R
879da446d12103fba9a2f79918a321ff *R/determineBaselineArray.R
5a9ca0c5f5b7427b050beaba5aa6bc9e *R/distributionDistance.R
5a9cdcc4c4b14f44b64a372952149b5a *R/dnaCopySf.R
3ce015512a60d01fb5422bdd75ab8f05 *R/doCnFarms.R
455a4aa5905c4be37b6a7e7e0f38a604 *R/fragLengthCorr.R
4891937295080b8650d5ca8e52221656 *R/normAdd.R
085c410d18416210d55fc82e9bd0dcf0 *R/normalizeAverage.R
5f6f45c8def36003e26ac7c1f3bcdb8c *R/normalizeCels.R
94735f1f946a86a352aa3e343867f6bc *R/normalizeNone.R
0da9d19a25cabdb4c2c28f48443c2a61 *R/normalizeNpData.R
2ac30ba4a77f124c1a7e70b59e9089b1 *R/normalizeProbeSequence.R
5edcacccc8479c723e668f295cfbfaf9 *R/normalizeQuantiles.R
120d005a8a841b0b509b6815a5b68588 *R/normalizeSor.R
bd83a516126fd5373833628130dc31ee *R/plotDendrogram.R
d070ff74a7ffca5f618c679fc04d10f6 *R/plotDensity.R
ff70a30ea893db18d00994d747ad2b33 *R/plotEvalIc.R
0f6e82fe3984a808253571ccd33053c7 *R/plotSmoothScatter.R
60c43a5a180548ec1ba0e7bcc9b5cfd6 *R/plotViolines.R
3f0e5192571030f567b22970664a134e *R/plotsRegions.R
1a3196d08bd7511b28a8f01766e3383a *R/sFclusterFunctions.R
0e69d7f3fd7cb2029b7b500aee4dfdee *R/sFinit.R
1869ac0ea8719cf6cf71fcedadfca990 *R/sFsnowWrappers.R
eae59c8b6746ecc34780832b50bfbddb *R/sFsnowfall-internal.R
fcadb20de2d648535663f280ae36a716 *R/sFsocketRequest.R
78e019f96081b7c97b8ec35742b4e68c *R/snowfallExt.R
2ccc875ff31c9668045a493b0d44aae1 *R/sparseFarmsC.R
0927bec68d3c898ce6bb8797f1b98b54 *R/summarizationMl.R
09cc3e3387f88bd3b5f492195b9e9250 *R/summarizationSl.R
d4db85d0f83d1bf114431072f8621f24 *R/summarizeFarmsGaussian.R
388f9606286e1110af9f1c69be5c3545 *R/summarizeFarmsLaplaceExact.R
1d7f8313cdb5dff02dad34a0058c16c4 *R/summarizeFarmsLaplaceExact2.R
31d57ccdaca0fb14f8a9466798031413 *R/summarizeFarmsLaplaceExact3.R
6d6048c23c71e47cbcb028533d64ac43 *R/summarizeFarmsLaplaceVar.R
2374601fca5b6fb62edf44e12d039a5e *R/summarizeFarmsMethods.R
ddb7e71f8dea2959fa6e6c9741e6609c *R/summarizeStatistics.R
2e4e313891a97e6ea3001119e8b127d5 *R/sysdata.rda
d7ad0e3b3dde5223327f7477e4a24c56 *R/utils-lds.R
3bd57b560094284683979d4a5b5b0a90 *R/vanillaIce.R
12229a56e8830dc4cf18b26bce109c66 *R/windowFunctions.R
3867118a65d7b7a62275406779c48a01 *R/windowMethods.R
80c6b1c84286474941393c7a749ed6e1 *R/zzz.R
d104c8e912ca28ce1176b93020b95416 *build/vignette.rds
5ed7c3dbf711cd1c12056aa2908e0c2c *demo/00Index
cf3c71c79de70bef0d83449ad466d2b8 *demo/demo01Snp6.R
0d5f6979edb3e3de85176a5f08f6fb78 *demo/demo02Snp5.R
e8c7ee7711cdbddcbba59b895bc412a3 *demo/demo03Snp500k.R
696bb0c9f4878542adac25d7f56cdd87 *demo/demo04Snp250k.R
f4be2b8a0465f99406d780002ca69bf4 *demo/demo05Snp50k.R
aec483226343b9b562b6ddd9cc254eab *demo/demo99Testing.R
05a6293cddcccc5b65cd3aa17f1b31c6 *inst/CITATION
94c89dbfebd90d87667e265df99e5aa1 *inst/doc/cn.farms.R
b9606f32aaa01cd4df27a8b9f8afeaf4 *inst/doc/cn.farms.Rnw
a2dff92945eb3dcd26ccfadcbde5c863 *inst/doc/cn.farms.pdf
1085ee54f861cb87a8b5b7cf0c967ce1 *inst/exampleData/annotation/pd.genomewidesnp.6/1.1.0/featureSet.RData
b9aa501e586912abef2a328966157e80 *inst/exampleData/mlData.RData
9a786aeae13eed8ee87e9fbc41e9a626 *inst/exampleData/normData.RData
920450746cf074644a0bc7ae3faead88 *inst/exampleData/slData.RData
e3cf226b4ee1d75ae32ade33ac04a8f1 *inst/exampleData/testSegments.RData
09b389af8fe7f5a164c3c0ee35f453e9 *man/callSummarize.Rd
6def3ee4a4ba0aaaaddd539acd3871fb *man/cn.farms.Rd
071fd114ea4752f0af750faf91761f44 *man/cnLibrary.Rd
ce4b231e34e8cba712cb83e076503b2a *man/combineData.Rd
5cbc137a14bdb6a7acd20958592b42e8 *man/createAnnotation.Rd
102d6a29d9863af31c99c80930e6c831 *man/createMatrix.Rd
5452ebaf442bc1874e053823c11220ad *man/distributionDistance.Rd
d40fb064e3b97d3fd78b7900cebcc08f *man/dnaCopySf.Rd
99e126df5fe91336ea31621a8dcdafe2 *man/doCnFarmsSingle.Rd
2278d196e24abf66735b690225a164ec *man/flcSnp6Std.Rd
1cd91100e138f6a3eb9df378659d2635 *man/flcStd.Rd
a58c92472641bc0081cdd5bcd824267b *man/fragLengCorr.Rd
5f8ae924860cca03d07ad38ecb96f105 *man/getFragmentSet.Rd
47d48af5577c0c1b4bb5459197efd920 *man/getSingleProbeSetSize.Rd
cd1b28dbca33ff2e2dc64cd9a44986be *man/mlSummarization.Rd
aa27ab4d6be4e47e1234e96eb4f09f77 *man/normAdd.Rd
95c47192a6768c41ec0fb7a46eceb0f4 *man/normalizeAverage.Rd
3bd57143f386f9ca108edabdd80e4695 *man/normalizeCels.Rd
7c9a7f73cd8dec9da8dfcdf66132d0b5 *man/normalizeNone.Rd
44d8b0666b4a318f67d2a39ac4cb3097 *man/normalizeNpData.Rd
b0dc150069693db2a9c4d9fe7035c6db *man/normalizeQuantiles.Rd
26c02485337890d4bbb4523f7bf21fbd *man/normalizeSequenceEffect.Rd
6a52ef0e75740bc5cd49b66c5e08f6bd *man/normalizeSor.Rd
0353cb8e073a24e7f4bb474d8fcf8ab1 *man/plotDendrogram.Rd
936f2a368fb1446bae6279fd9587b7c1 *man/plotDensity.Rd
b1b3d2e0eeb540c8c967d8e574dd6248 *man/plotEvalIc.Rd
50efa17f5cbd473814541d262ee45c1f *man/plotRegions.Rd
6d10b1946d5e0c8dfd95e4dad977e480 *man/plotSmoothScatter.Rd
9e2b323992e57675fea3df30ef30ecd1 *man/plotViolines.Rd
54f02ab888288b9650af2c83e5eeabdf *man/slSummarization.Rd
3e3dfca7324cbedb4c7b40f4712f7d94 *man/sparseFarmsC.Rd
06c1dba839cffc44b22a654878ff0286 *man/summarizeFarmsExact.Rd
af32ebf3c2363889d555cff59f297b79 *man/summarizeFarmsExact2.Rd
8f861be77fad4e19b3c301b222e844ad *man/summarizeFarmsExact3.Rd
55388b14124694d0cc2010b0c2d6f6df *man/summarizeFarmsGaussian.Rd
b33562a376e043f99fa7bd62c70a437b *man/summarizeFarmsMethods.Rd
34c851aca9f3e5ec60d5d106ca9b14e4 *man/summarizeFarmsStatistics.Rd
bfdee7632997b69ebde2f6fbd120dce4 *man/summarizeFarmsVariational.Rd
9324efc696b23657cf53c3fbb321ac71 *man/summarizeWindowBps.Rd
1bf494624f5814e7e7034ad0adea9070 *man/summarizeWindowMethods.Rd
319eb0decdba24870df86a67c0211ebb *man/summarizeWindowStd.Rd
59c36d5bb119860b8c15f7e61513e943 *src/R_init_cnfarms.c
99630437d407e62806e981e04fde346b *src/cn.farms.h
169f2658a331e2fdf60c456a3b50b2af *src/laplace.cpp
8b22849c142a24d1ad7104fa37a86e43 *src/sepp_vect.h
287b900d3d9ed43325739ad1c84259fa *src/sparse_farms.c
efb91b4e67149d593b9217dfb152a13a *vignettes/bioinf-article.txi
796c822a42721e608226ad8b86954533 *vignettes/bioinf-bar.png
770268490fa9fae5234d3bdee15e2596 *vignettes/bioinf.cls
b9606f32aaa01cd4df27a8b9f8afeaf4 *vignettes/cn.farms.Rnw
9e27de7b998551726312d8db85192d12 *vignettes/cnFarmsDefs.sty
8c12af45bdb09186e065b97f2927b264 *vignettes/cnv.bib
2c717b7e0204ca66f27bcaecbc44a8e0 *vignettes/figures/figure1.pdf
d285b8be0f8cf7f05c98df3b710703f7 *vignettes/figures/figure2.pdf
422b02faf00a676c819b13b81ec67e99 *vignettes/natbib.bst
adbbf2c54998cc55da9dcaeb7647ec94 *vignettes/natbib.sty
